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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GGT
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167933 (1 seq.)
>SRA1041272
SRR035091.221935
454 Sequencing (SRP001812)
339
416
+
Thr
GGT
[SRA]
Identical group No.243105 (1 seq.)
>SRA1041736
SRR035091.284465
454 Sequencing (SRP001812)
52
126
+
Thr
GGT
[SRA]
Identical group No.243106 (1 seq.)
>SRA1041749
SRR035091.287697
454 Sequencing (SRP001812)
588
512
-
Thr
GGT
[SRA]
Identical group No.355320 (2 seq.)
>SRA1040051
SRR035091.26655
454 Sequencing (SRP001812)
435
360
-
Thr
GGT
[SRA]
>SRA1040338
SRR035091.80815
454 Sequencing (SRP001812)
433
357
-
Thr
GGT
[SRA]
Identical group No.355348 (2 seq.)
>SRA1040333
SRR035091.80325
454 Sequencing (SRP001812)
167
92
-
Thr
GGT
[SRA]
>SRA1040385
SRR035091.88081
454 Sequencing (SRP001812)
166
91
-
Thr
GGT
[SRA]
Identical group No.355385 (2 seq.)
>SRA1040806
SRR035091.152725
454 Sequencing (SRP001812)
93
18
-
Thr
GGT
[SRA]
>SRA1041158
SRR035091.207162
454 Sequencing (SRP001812)
93
18
-
Thr
GGT
[SRA]
Identical group No.355391 (1 seq.)
>SRA1040876
SRR035091.162426
454 Sequencing (SRP001812)
386
311
-
Thr
GGT
[SRA]
Identical group No.355409 (1 seq.)
>SRA1041139
SRR035091.203658
454 Sequencing (SRP001812)
48
123
+
Thr
GGT
[SRA]
Identical group No.355441 (1 seq.)
>SRA1041680
SRR035091.277747
454 Sequencing (SRP001812)
102
174
+
Thr
GGT
[SRA]
Identical group No.355442 (1 seq.)
>SRA1041728
SRR035091.283612
454 Sequencing (SRP001812)
144
71
-
Thr
GGT
[SRA]
Identical group No.355453 (1 seq.)
>SRA1041900
SRR035091.313087
454 Sequencing (SRP001812)
350
425
+
Thr
GGT
[SRA]
Identical group No.355463 (1 seq.)
>SRA1042087
SRR035091.336096
454 Sequencing (SRP001812)
267
339
+
Thr
GGT
[SRA]
Identical group No.355476 (1 seq.)
>SRA1042273
SRR035091.365844
454 Sequencing (SRP001812)
438
364
-
Thr
GGT
[SRA]
Identical group No.355489 (1 seq.)
>SRA1042444
SRR035091.387384
454 Sequencing (SRP001812)
255
183
-
Thr
GGT
[SRA]
Identical group No.355494 (1 seq.)
>SRA1042517
SRR035091.400940
454 Sequencing (SRP001812)
365
289
-
Thr
GGT
[SRA]
Identical group No.355511 (1 seq.)
>SRA1042686
SRR035091.429650
454 Sequencing (SRP001812)
350
275
-
Thr
GGT
[SRA]
Identical group No.448036 (1 seq.)
>SRA1040245
SRR035091.64698
454 Sequencing (SRP001812)
221
147
-
Thr
GGT
[SRA]
Identical group No.448070 (2 seq.)
>SRA1040613
SRR035091.122596
454 Sequencing (SRP001812)
200
126
-
Thr
GGT
[SRA]
>SRA1042170
SRR035091.349521
454 Sequencing (SRP001812)
163
89
-
Thr
GGT
[SRA]
Identical group No.448168 (1 seq.)
>SRA1042126
SRR035091.342857
454 Sequencing (SRP001812)
444
370
-
Thr
GGT
[SRA]
Identical group No.448203 (1 seq.)
>SRA1042682
SRR035091.428893
454 Sequencing (SRP001812)
295
367
+
Thr
GGT
[SRA]
Identical group No.503055 (1 seq.)
>SRA1042294
SRR035091.368951
454 Sequencing (SRP001812)
301
374
+
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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