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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GTA
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7394 (1 seq.)
>SRA1040295
SRR035091.73546
454 Sequencing (SRP001812)
154
59
-
Tyr
GTA
[SRA]
Identical group No.52452 (2 seq.)
>SRA1040337
SRR035091.80774
454 Sequencing (SRP001812)
107
195
+
Tyr
GTA
[SRA]
>SRA1040871
SRR035091.162036
454 Sequencing (SRP001812)
107
195
+
Tyr
GTA
[SRA]
Identical group No.110765 (1 seq.)
>SRA1040201
SRR035091.57406
454 Sequencing (SRP001812)
301
384
+
Tyr
GTA
[SRA]
Identical group No.110766 (1 seq.)
>SRA1040246
SRR035091.64698
454 Sequencing (SRP001812)
135
50
-
Tyr
GTA
[SRA]
Identical group No.110773 (2 seq.)
>SRA1040805
SRR035091.152725
454 Sequencing (SRP001812)
338
255
-
Tyr
GTA
[SRA]
>SRA1041157
SRR035091.207162
454 Sequencing (SRP001812)
339
256
-
Tyr
GTA
[SRA]
Identical group No.110777 (1 seq.)
>SRA1041698
SRR035091.280207
454 Sequencing (SRP001812)
431
346
-
Tyr
GTA
[SRA]
Identical group No.110783 (1 seq.)
>SRA1042511
SRR035091.400329
454 Sequencing (SRP001812)
18
101
+
Tyr
GTA
[SRA]
Identical group No.132284 (1 seq.)
>SRA1040276
SRR035091.71394
454 Sequencing (SRP001812)
383
299
-
Tyr
GTA
[SRA]
Identical group No.132291 (2 seq.)
>SRA1040748
SRR035091.142395
454 Sequencing (SRP001812)
317
402
+
Tyr
GTA
[SRA]
>SRA1040763
SRR035091.144093
454 Sequencing (SRP001812)
313
398
+
Tyr
GTA
[SRA]
Identical group No.132303 (1 seq.)
>SRA1041920
SRR035091.315741
454 Sequencing (SRP001812)
479
395
-
Tyr
GTA
[SRA]
Identical group No.132304 (1 seq.)
>SRA1042133
SRR035091.343827
454 Sequencing (SRP001812)
262
346
+
Tyr
GTA
[SRA]
Identical group No.132306 (1 seq.)
>SRA1042518
SRR035091.400940
454 Sequencing (SRP001812)
286
202
-
Tyr
GTA
[SRA]
Identical group No.132308 (1 seq.)
>SRA1042681
SRR035091.428893
454 Sequencing (SRP001812)
210
292
+
Tyr
GTA
[SRA]
Identical group No.132309 (1 seq.)
>SRA1042687
SRR035091.429650
454 Sequencing (SRP001812)
274
193
-
Tyr
GTA
[SRA]
Identical group No.132311 (1 seq.)
>SRA1040843
SRR035091.158778
454 Sequencing (SRP001812)
239
323
+
Tyr
GTA
[SRA]
Identical group No.132312 (1 seq.)
>SRA1042644
SRR035091.422984
454 Sequencing (SRP001812)
206
122
-
Tyr
GTA
[SRA]
Identical group No.145016 (1 seq.)
>SRA1039985
SRR035091.9720
454 Sequencing (SRP001812)
89
170
+
Tyr
GTA
[SRA]
Identical group No.355398 (1 seq.)
>SRA1040969
SRR035091.175559
454 Sequencing (SRP001812)
243
318
+
Tyr
GTA
[SRA]
Identical group No.448023 (3 seq.)
>SRA1040074
SRR035091.33232
454 Sequencing (SRP001812)
9
80
+
Tyr
GTA
[SRA]
>SRA1040232
SRR035091.63904
454 Sequencing (SRP001812)
9
80
+
Tyr
GTA
[SRA]
>SRA1040770
SRR035091.145933
454 Sequencing (SRP001812)
9
80
+
Tyr
GTA
[SRA]
Identical group No.448047 (1 seq.)
>SRA1040432
SRR035091.96685
454 Sequencing (SRP001812)
163
91
-
Tyr
GTA
[SRA]
Identical group No.448116 (1 seq.)
>SRA1041277
SRR035091.222099
454 Sequencing (SRP001812)
274
345
+
Tyr
GTA
[SRA]
Identical group No.503062 (1 seq.)
>SRA1042542
SRR035091.405596
454 Sequencing (SRP001812)
292
362
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK