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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GTC
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154175 (1 seq.)
>SRA1041355
SRR035091.232142
454 Sequencing (SRP001812)
411
333
-
Asp
GTC
[SRA]
Identical group No.167915 (1 seq.)
>SRA1040585
SRR035091.118826
454 Sequencing (SRP001812)
96
173
+
Asp
GTC
[SRA]
Identical group No.167917 (1 seq.)
>SRA1040616
SRR035091.122740
454 Sequencing (SRP001812)
122
47
-
Asp
GTC
[SRA]
Identical group No.167919 (1 seq.)
>SRA1040677
SRR035091.131223
454 Sequencing (SRP001812)
254
328
+
Asp
GTC
[SRA]
Identical group No.167923 (1 seq.)
>SRA1040844
SRR035091.158778
454 Sequencing (SRP001812)
325
401
+
Asp
GTC
[SRA]
Identical group No.167927 (2 seq.)
>SRA1041006
SRR035091.180689
454 Sequencing (SRP001812)
402
327
-
Asp
GTC
[SRA]
>SRA1041044
SRR035091.186957
454 Sequencing (SRP001812)
441
366
-
Asp
GTC
[SRA]
Identical group No.167948 (1 seq.)
>SRA1042047
SRR035091.332384
454 Sequencing (SRP001812)
333
256
-
Asp
GTC
[SRA]
Identical group No.167951 (1 seq.)
>SRA1042198
SRR035091.352518
454 Sequencing (SRP001812)
367
290
-
Asp
GTC
[SRA]
Identical group No.167969 (1 seq.)
>SRA1042909
SRR035091.465935
454 Sequencing (SRP001812)
51
126
+
Asp
GTC
[SRA]
Identical group No.243017 (1 seq.)
>SRA1040331
SRR035091.79909
454 Sequencing (SRP001812)
290
366
+
Asp
GTC
[SRA]
Identical group No.243040 (1 seq.)
>SRA1040686
SRR035091.132890
454 Sequencing (SRP001812)
342
418
+
Asp
GTC
[SRA]
Identical group No.243078 (1 seq.)
>SRA1041358
SRR035091.232355
454 Sequencing (SRP001812)
262
339
+
Asp
GTC
[SRA]
Identical group No.243101 (1 seq.)
>SRA1041687
SRR035091.278757
454 Sequencing (SRP001812)
404
328
-
Asp
GTC
[SRA]
Identical group No.243134 (1 seq.)
>SRA1042364
SRR035091.378460
454 Sequencing (SRP001812)
237
162
-
Asp
GTC
[SRA]
Identical group No.243138 (1 seq.)
>SRA1042462
SRR035091.390048
454 Sequencing (SRP001812)
33
109
+
Asp
GTC
[SRA]
Identical group No.243175 (1 seq.)
>SRA1042432
SRR035091.386091
454 Sequencing (SRP001812)
342
267
-
Asp
GTC
[SRA]
Identical group No.355337 (1 seq.)
>SRA1040206
SRR035091.58281
454 Sequencing (SRP001812)
30
103
+
Asp
GTC
[SRA]
Identical group No.355393 (1 seq.)
>SRA1040888
SRR035091.163948
454 Sequencing (SRP001812)
456
381
-
Asp
GTC
[SRA]
Identical group No.448077 (1 seq.)
>SRA1040683
SRR035091.132334
454 Sequencing (SRP001812)
120
192
+
Asp
GTC
[SRA]
Identical group No.448088 (1 seq.)
>SRA1040828
SRR035091.156562
454 Sequencing (SRP001812)
215
141
-
Asp
GTC
[SRA]
Identical group No.448092 (1 seq.)
>SRA1040868
SRR035091.161607
454 Sequencing (SRP001812)
178
250
+
Asp
GTC
[SRA]
Identical group No.448147 (1 seq.)
>SRA1041777
SRR035091.293225
454 Sequencing (SRP001812)
172
101
-
Asp
GTC
[SRA]
Identical group No.448195 (1 seq.)
>SRA1042551
SRR035091.407114
454 Sequencing (SRP001812)
23
97
+
Asp
GTC
[SRA]
Identical group No.503000 (2 seq.)
>SRA1040964
SRR035091.175352
454 Sequencing (SRP001812)
65
135
+
Asp
GTC
[SRA]
>SRA1041259
SRR035091.220683
454 Sequencing (SRP001812)
65
135
+
Asp
GTC
[SRA]
Identical group No.503027 (1 seq.)
>SRA1041577
SRR035091.263177
454 Sequencing (SRP001812)
339
411
+
Asp
GTC
[SRA]
Identical group No.503053 (1 seq.)
>SRA1042275
SRR035091.366629
454 Sequencing (SRP001812)
124
52
-
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK