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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GTC
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240884 (6 seq.)
>WENV170622008
FUWD013084023
[FUWD] metagenome; unknown
1728
1651
-
Asp
GTC
[ENA]
¢þ
>WENV170630211
FUWD013299196
[FUWD] metagenome; unknown
1728
1651
-
Asp
GTC
[ENA]
¢þ
>SRA1034916
SRR035089.198261
454 Sequencing (SRP001810)
316
393
+
Asp
GTC
[SRA]
>SRA1036203
SRR035089.470764
454 Sequencing (SRP001810)
14
91
+
Asp
GTC
[SRA]
>SRA1041570
SRR035091.262037
454 Sequencing (SRP001812)
259
336
+
Asp
GTC
[SRA]
>SRA1050203
SRR035095.211787
454 Sequencing (SRP001816)
436
513
+
Asp
GTC
[SRA]
Identical group No.244437 (4 seq.)
>WENV170621981
FUWD013082375
[FUWD] metagenome; unknown
687
764
+
Asp
GTC
[ENA]
¢þ
>WENV170630177
FUWD013297689
[FUWD] metagenome; unknown
687
764
+
Asp
GTC
[ENA]
¢þ
>SRA1029095
SRR035087.71700
454 Sequencing (SRP001808)
24
101
+
Asp
GTC
[SRA]
>SRA1040587
SRR035091.118969
454 Sequencing (SRP001812)
306
383
+
Asp
GTC
[SRA]
Identical group No.253983 (5 seq.)
>WENV170602342
FUWD010229034
[FUWD] metagenome; unknown
295
218
-
Asp
GTC
[ENA]
¢þ
>SRA1033636
SRR035088.309149
454 Sequencing (SRP001809)
134
57
-
Asp
GTC
[SRA]
>SRA1038979
SRR035090.402943
454 Sequencing (SRP001811)
473
396
-
Asp
GTC
[SRA]
>SRA1040553
SRR035091.114309
454 Sequencing (SRP001812)
79
156
+
Asp
GTC
[SRA]
>SRA1042422
SRR035091.384924
454 Sequencing (SRP001812)
217
140
-
Asp
GTC
[SRA]
Identical group No.254073 (3 seq.)
>WENV170608113
FUWD010894626
[FUWD] metagenome; unknown
421
344
-
Asp
GTC
[ENA]
¢þ
>SRA1034052
SRR035088.469242
454 Sequencing (SRP001809)
97
174
+
Asp
GTC
[SRA]
>SRA1041066
SRR035091.190864
454 Sequencing (SRP001812)
310
233
-
Asp
GTC
[SRA]
Identical group No.254164 (2 seq.)
>WENV170612562
FUWD012634330
[FUWD] metagenome; unknown
140
63
-
Asp
GTC
[ENA]
¢þ
>SRA1042763
SRR035091.443139
454 Sequencing (SRP001812)
140
63
-
Asp
GTC
[SRA]
Identical group No.272496 (8 seq.)
>WENV170605105
FUWD010449582
[FUWD] metagenome; unknown
437
363
-
Asp
GTC
[ENA]
¢þ
>SRA1031270
SRR035087.403480
454 Sequencing (SRP001808)
314
240
-
Asp
GTC
[SRA]
>SRA1034163
SRR035089.6687
454 Sequencing (SRP001810)
115
41
-
Asp
GTC
[SRA]
>SRA1034470
SRR035089.101941
454 Sequencing (SRP001810)
522
448
-
Asp
GTC
[SRA]
>SRA1035213
SRR035089.261890
454 Sequencing (SRP001810)
522
448
-
Asp
GTC
[SRA]
>SRA1035224
SRR035089.263639
454 Sequencing (SRP001810)
343
269
-
Asp
GTC
[SRA]
>SRA1041850
SRR035091.304813
454 Sequencing (SRP001812)
44
118
+
Asp
GTC
[SRA]
>SRA1049289
SRR035095.50795
454 Sequencing (SRP001816)
273
199
-
Asp
GTC
[SRA]
Identical group No.272619 (10 seq.)
>WENV170603377
FUWD010306356
[FUWD] metagenome; unknown
491
415
-
Asp
GTC
[ENA]
¢þ
>WENV170623461
FUWD013152252
[FUWD] metagenome; unknown
923
999
+
Asp
GTC
[ENA]
¢þ
>WENV170631726
FUWD013363174
[FUWD] metagenome; unknown
923
999
+
Asp
GTC
[ENA]
¢þ
>SRA1033782
SRR035088.352891
454 Sequencing (SRP001809)
105
181
+
Asp
GTC
[SRA]
>SRA1034803
SRR035089.176233
454 Sequencing (SRP001810)
166
90
-
Asp
GTC
[SRA]
>SRA1035670
SRR035089.351974
454 Sequencing (SRP001810)
473
397
-
Asp
GTC
[SRA]
>SRA1041375
SRR035091.234667
454 Sequencing (SRP001812)
93
169
+
Asp
GTC
[SRA]
>SRA1049109
SRR035095.21466
454 Sequencing (SRP001816)
315
239
-
Asp
GTC
[SRA]
>SRA1049259
SRR035095.46926
454 Sequencing (SRP001816)
315
239
-
Asp
GTC
[SRA]
>SRA1050197
SRR035095.210462
454 Sequencing (SRP001816)
501
425
-
Asp
GTC
[SRA]
Identical group No.272817 (7 seq.)
>SRA1019008
SRR035082.385065
454 Sequencing (SRP001803)
349
423
+
Asp
GTC
[SRA]
>SRA1019820
SRR035082.537764
454 Sequencing (SRP001803)
7
83
+
Asp
GTC
[SRA]
>SRA1035937
SRR035089.408662
454 Sequencing (SRP001810)
348
272
-
Asp
GTC
[SRA]
>SRA1041660
SRR035091.275534
454 Sequencing (SRP001812)
216
292
+
Asp
GTC
[SRA]
>SRA1044635
SRR035092.313851
454 Sequencing (SRP001813)
56
130
+
Asp
GTC
[SRA]
>SRA1049638
SRR035095.109363
454 Sequencing (SRP001816)
197
121
-
Asp
GTC
[SRA]
>SRA1050224
SRR035095.215383
454 Sequencing (SRP001816)
197
121
-
Asp
GTC
[SRA]
Identical group No.300418 (8 seq.)
>WENV170602322
FUWD010226285
[FUWD] metagenome; unknown
831
755
-
Asp
GTC
[ENA]
¢þ
>WENV170612534
FUWD012629978
[FUWD] metagenome; unknown
126
202
+
Asp
GTC
[ENA]
¢þ
>SRA1017471
SRR035082.145279
454 Sequencing (SRP001803)
353
277
-
Asp
GTC
[SRA]
>SRA1029865
SRR035087.194302
454 Sequencing (SRP001808)
78
2
-
Asp
GTC
[SRA]
>SRA1032972
SRR035088.142027
454 Sequencing (SRP001809)
193
269
+
Asp
GTC
[SRA]
>SRA1033107
SRR035088.175898
454 Sequencing (SRP001809)
400
324
-
Asp
GTC
[SRA]
>SRA1033815
SRR035088.362732
454 Sequencing (SRP001809)
155
79
-
Asp
GTC
[SRA]
>SRA1040952
SRR035091.172965
454 Sequencing (SRP001812)
221
297
+
Asp
GTC
[SRA]
Identical group No.300664 (2 seq.)
>SRA1031347
SRR035087.415726
454 Sequencing (SRP001808)
292
218
-
Asp
GTC
[SRA]
>SRA1042490
SRR035091.396323
454 Sequencing (SRP001812)
134
60
-
Asp
GTC
[SRA]
Identical group No.300799 (7 seq.)
>WENV170608144
FUWD010896169
[FUWD] metagenome; unknown
315
239
-
Asp
GTC
[ENA]
¢þ
>WENV170623407
FUWD013150146
[FUWD] metagenome; unknown
1012
936
-
Asp
GTC
[ENA]
¢þ
>WENV170631676
FUWD013361228
[FUWD] metagenome; unknown
1012
936
-
Asp
GTC
[ENA]
¢þ
>SRA1018478
SRR035082.297260
454 Sequencing (SRP001803)
466
390
-
Asp
GTC
[SRA]
>SRA1032237
SRR035087.584261
454 Sequencing (SRP001808)
87
11
-
Asp
GTC
[SRA]
>SRA1041930
SRR035091.316204
454 Sequencing (SRP001812)
315
239
-
Asp
GTC
[SRA]
>SRA1042848
SRR035091.455080
454 Sequencing (SRP001812)
276
352
+
Asp
GTC
[SRA]
Identical group No.335152 (2 seq.)
>WENV170572004
FLOH01000442
[FLOH] marine metagenome; water
48465
48541
+
Asp
GTC
[ENA]
¢þ
>SRA1042784
SRR035091.447153
454 Sequencing (SRP001812)
48
123
+
Asp
GTC
[SRA]
Identical group No.357996 (2 seq.)
>WENV170608148
FUWD010896348
[FUWD] metagenome; unknown
624
700
+
Asp
GTC
[ENA]
¢þ
>SRA1042072
SRR035091.334299
454 Sequencing (SRP001812)
75
151
+
Asp
GTC
[SRA]
Identical group No.358289 (2 seq.)
>WENV170611660
FUWD012368355
[FUWD] metagenome; unknown
87
163
+
Asp
GTC
[ENA]
¢þ
>SRA1041654
SRR035091.274735
454 Sequencing (SRP001812)
163
239
+
Asp
GTC
[SRA]
Identical group No.358362 (3 seq.)
>WENV170612497
FUWD012623526
[FUWD] metagenome; unknown
100
24
-
Asp
GTC
[ENA]
¢þ
>SRA1041493
SRR035091.249741
454 Sequencing (SRP001812)
241
317
+
Asp
GTC
[SRA]
>SRA1041696
SRR035091.280189
454 Sequencing (SRP001812)
100
24
-
Asp
GTC
[SRA]
Identical group No.358433 (2 seq.)
>WENV170613084
FUWD012779533
[FUWD] metagenome; unknown
13
87
+
Asp
GTC
[ENA]
¢þ
>SRA1042861
SRR035091.457368
454 Sequencing (SRP001812)
11
87
+
Asp
GTC
[SRA]
Identical group No.358484 (4 seq.)
>WENV170613430
FUWD012803566
[FUWD] metagenome; unknown
220
294
+
Asp
GTC
[ENA]
¢þ
>SRA1017878
SRR035082.209450
454 Sequencing (SRP001803)
284
210
-
Asp
GTC
[SRA]
>SRA1040190
SRR035091.55482
454 Sequencing (SRP001812)
167
241
+
Asp
GTC
[SRA]
>SRA1044731
SRR035092.330595
454 Sequencing (SRP001813)
113
39
-
Asp
GTC
[SRA]
Identical group No.358905 (4 seq.)
>WENV170625725
FUWD013204234
[FUWD] metagenome; unknown
4263
4337
+
Asp
GTC
[ENA]
¢þ
>WENV170633947
FUWD013406179
[FUWD] metagenome; unknown
4263
4337
+
Asp
GTC
[ENA]
¢þ
>SRA1040755
SRR035091.143704
454 Sequencing (SRP001812)
413
487
+
Asp
GTC
[SRA]
>SRA1042271
SRR035091.365220
454 Sequencing (SRP001812)
408
482
+
Asp
GTC
[SRA]
Identical group No.358939 (7 seq.)
>WENV170626649
FUWD013227893
[FUWD] metagenome; unknown
908
832
-
Asp
GTC
[ENA]
¢þ
>WENV170626908
FUWD013230037
[FUWD] metagenome; unknown
117
193
+
Asp
GTC
[ENA]
¢þ
>SRA1017603
SRR035082.166284
454 Sequencing (SRP001803)
138
214
+
Asp
GTC
[SRA]
>SRA1018129
SRR035082.244168
454 Sequencing (SRP001803)
448
372
-
Asp
GTC
[SRA]
>SRA1019053
SRR035082.392479
454 Sequencing (SRP001803)
143
67
-
Asp
GTC
[SRA]
>SRA1042096
SRR035091.337452
454 Sequencing (SRP001812)
136
60
-
Asp
GTC
[SRA]
>SRA1044160
SRR035092.234025
454 Sequencing (SRP001813)
82
6
-
Asp
GTC
[SRA]
Identical group No.358946 (6 seq.)
>WENV170626770
FUWD013229352
[FUWD] metagenome; unknown
6836
6912
+
Asp
GTC
[ENA]
¢þ
>SRA1040760
SRR035091.144013
454 Sequencing (SRP001812)
407
483
+
Asp
GTC
[SRA]
>SRA1042000
SRR035091.325881
454 Sequencing (SRP001812)
153
77
-
Asp
GTC
[SRA]
>SRA1048264
SRR035094.136564
454 Sequencing (SRP001815)
455
379
-
Asp
GTC
[SRA]
>SRA1048681
SRR035094.225747
454 Sequencing (SRP001815)
88
164
+
Asp
GTC
[SRA]
>SRA1048908
SRR035094.283119
454 Sequencing (SRP001815)
87
163
+
Asp
GTC
[SRA]
Identical group No.453444 (10 seq.)
>WENV170605185
FUWD010457190
[FUWD] metagenome; unknown
129
204
+
Asp
GTC
[ENA]
¢þ
>WENV170612743
FUWD012676665
[FUWD] metagenome; unknown
166
241
+
Asp
GTC
[ENA]
¢þ
>SRA1026781
SRR035085.289052
454 Sequencing (SRP001806)
132
207
+
Asp
GTC
[SRA]
>SRA1034014
SRR035088.447471
454 Sequencing (SRP001809)
129
202
+
Asp
GTC
[SRA]
>SRA1042895
SRR035091.462727
454 Sequencing (SRP001812)
143
68
-
Asp
GTC
[SRA]
>SRA1043540
SRR035092.134795
454 Sequencing (SRP001813)
168
93
-
Asp
GTC
[SRA]
>SRA1044743
SRR035092.332736
454 Sequencing (SRP001813)
130
55
-
Asp
GTC
[SRA]
>SRA1048030
SRR035094.95388
454 Sequencing (SRP001815)
119
192
+
Asp
GTC
[SRA]
>SRA1048363
SRR035094.157241
454 Sequencing (SRP001815)
176
251
+
Asp
GTC
[SRA]
>SRA1048626
SRR035094.211617
454 Sequencing (SRP001815)
81
156
+
Asp
GTC
[SRA]
Identical group No.547992 (4 seq.)
>WENV170608099
FUWD010893125
[FUWD] metagenome; unknown
121
196
+
Asp
GTC
[ENA]
¢þ
>SRA1040371
SRR035091.86157
454 Sequencing (SRP001812)
123
198
+
Asp
GTC
[SRA]
>SRA1041441
SRR035091.242467
454 Sequencing (SRP001812)
35
110
+
Asp
GTC
[SRA]
>SRA1041767
SRR035091.290242
454 Sequencing (SRP001812)
151
76
-
Asp
GTC
[SRA]
Identical group No.654423 (15 seq.)
>WENV170619951
FUWD013023483
[FUWD] metagenome; unknown
362
435
+
Asp
GTC
[ENA]
¢þ
>WENV170626761
FUWD013229340
[FUWD] metagenome; unknown
15436
15362
-
Asp
GTC
[ENA]
¢þ
>WENV170628077
FUWD013241552
[FUWD] metagenome; unknown
362
435
+
Asp
GTC
[ENA]
¢þ
>SRA1018065
SRR035082.233516
454 Sequencing (SRP001803)
265
338
+
Asp
GTC
[SRA]
>SRA1031687
SRR035087.471674
454 Sequencing (SRP001808)
342
416
+
Asp
GTC
[SRA]
>SRA1032431
SRR035088.6016
454 Sequencing (SRP001809)
119
45
-
Asp
GTC
[SRA]
>SRA1033877
SRR035088.388152
454 Sequencing (SRP001809)
84
11
-
Asp
GTC
[SRA]
>SRA1034230
SRR035089.31823
454 Sequencing (SRP001810)
130
56
-
Asp
GTC
[SRA]
>SRA1039969
SRR035091.1960
454 Sequencing (SRP001812)
119
193
+
Asp
GTC
[SRA]
>SRA1040049
SRR035091.26144
454 Sequencing (SRP001812)
80
6
-
Asp
GTC
[SRA]
>SRA1041306
SRR035091.225933
454 Sequencing (SRP001812)
122
195
+
Asp
GTC
[SRA]
>SRA1041847
SRR035091.304166
454 Sequencing (SRP001812)
467
394
-
Asp
GTC
[SRA]
>SRA1043335
SRR035092.98015
454 Sequencing (SRP001813)
276
349
+
Asp
GTC
[SRA]
>SRA1050071
SRR035095.187282
454 Sequencing (SRP001816)
58
131
+
Asp
GTC
[SRA]
>SRA1050297
SRR035095.233410
454 Sequencing (SRP001816)
149
76
-
Asp
GTC
[SRA]
Identical group No.693416 (4 seq.)
>WENV183801946
PVBE010719442
[PVBE] marine metagenome; water
102
28
-
Asp
GTC
[ENA]
¢þ
>WENV170394838
CEUC01061026
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
718
794
+
Asp
GTC
[ENA]
¢þ
>WENV170874891
MDTC01013011
[MDTC] marine metagenome; seawater
2269
2193
-
Asp
GTC
[ENA]
¢þ
>SRA1040056
SRR035091.28930
454 Sequencing (SRP001812)
142
69
-
Asp
GTC
[SRA]
Identical group No.711033 (3 seq.)
>WENV170611658
FUWD012367366
[FUWD] metagenome; unknown
75
2
-
Asp
GTC
[ENA]
¢þ
>SRA1019038
SRR035082.390208
454 Sequencing (SRP001803)
268
195
-
Asp
GTC
[SRA]
>SRA1041423
SRR035091.240043
454 Sequencing (SRP001812)
155
228
+
Asp
GTC
[SRA]
Identical group No.720208 (2 seq.)
>SRA1042394
SRR035091.381212
454 Sequencing (SRP001812)
579
506
-
Asp
GTC
[SRA]
>SRA1043248
SRR035092.81964
454 Sequencing (SRP001813)
481
405
-
Asp
GTC
[SRA]
Identical group No.805273 (3 seq.)
>WENV170612483
FUWD012620818
[FUWD] metagenome; unknown
85
158
+
Asp
GTC
[ENA]
¢þ
>SRA1041473
SRR035091.247455
454 Sequencing (SRP001812)
374
447
+
Asp
GTC
[SRA]
>SRA1042957
SRR035092.1494
454 Sequencing (SRP001813)
85
158
+
Asp
GTC
[SRA]
Identical group No.805446 (4 seq.)
>WENV170622771
FUWD013120840
[FUWD] metagenome; unknown
686
614
-
Asp
GTC
[ENA]
¢þ
>WENV170630984
FUWD013334610
[FUWD] metagenome; unknown
686
614
-
Asp
GTC
[ENA]
¢þ
>SRA1040449
SRR035091.98796
454 Sequencing (SRP001812)
89
161
+
Asp
GTC
[SRA]
>SRA1041635
SRR035091.271729
454 Sequencing (SRP001812)
208
136
-
Asp
GTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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