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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GTG
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242991 (1 seq.)
>SRA1039984
SRR035091.9720
454 Sequencing (SRP001812)
10
85
+
His
GTG
[SRA]
Identical group No.243024 (1 seq.)
>SRA1040462
SRR035091.100924
454 Sequencing (SRP001812)
418
493
+
His
GTG
[SRA]
Identical group No.243055 (1 seq.)
>SRA1040917
SRR035091.168739
454 Sequencing (SRP001812)
136
210
+
His
GTG
[SRA]
Identical group No.243141 (1 seq.)
>SRA1042491
SRR035091.396335
454 Sequencing (SRP001812)
143
68
-
His
GTG
[SRA]
Identical group No.243162 (1 seq.)
>SRA1042841
SRR035091.453812
454 Sequencing (SRP001812)
165
90
-
His
GTG
[SRA]
Identical group No.355328 (1 seq.)
>SRA1040134
SRR035091.45112
454 Sequencing (SRP001812)
12
87
+
His
GTG
[SRA]
Identical group No.355387 (1 seq.)
>SRA1040846
SRR035091.159020
454 Sequencing (SRP001812)
36
111
+
His
GTG
[SRA]
Identical group No.355418 (1 seq.)
>SRA1041249
SRR035091.220152
454 Sequencing (SRP001812)
370
445
+
His
GTG
[SRA]
Identical group No.355435 (1 seq.)
>SRA1041525
SRR035091.255905
454 Sequencing (SRP001812)
27
101
+
His
GTG
[SRA]
Identical group No.355490 (1 seq.)
>SRA1042453
SRR035091.388297
454 Sequencing (SRP001812)
384
309
-
His
GTG
[SRA]
Identical group No.355542 (1 seq.)
>SRA1042130
SRR035091.343759
454 Sequencing (SRP001812)
211
285
+
His
GTG
[SRA]
Identical group No.448020 (1 seq.)
>SRA1040065
SRR035091.30067
454 Sequencing (SRP001812)
278
351
+
His
GTG
[SRA]
Identical group No.448081 (1 seq.)
>SRA1040749
SRR035091.143151
454 Sequencing (SRP001812)
113
42
-
His
GTG
[SRA]
Identical group No.448106 (1 seq.)
>SRA1041053
SRR035091.188177
454 Sequencing (SRP001812)
146
72
-
His
GTG
[SRA]
Identical group No.448128 (1 seq.)
>SRA1041520
SRR035091.255121
454 Sequencing (SRP001812)
80
152
+
His
GTG
[SRA]
Identical group No.448134 (1 seq.)
>SRA1041613
SRR035091.269923
454 Sequencing (SRP001812)
181
107
-
His
GTG
[SRA]
Identical group No.448181 (1 seq.)
>SRA1042383
SRR035091.379972
454 Sequencing (SRP001812)
184
111
-
His
GTG
[SRA]
Identical group No.448230 (1 seq.)
>SRA1041014
SRR035091.181953
454 Sequencing (SRP001812)
65
137
+
His
GTG
[SRA]
Identical group No.448234 (1 seq.)
>SRA1041609
SRR035091.269558
454 Sequencing (SRP001812)
128
200
+
His
GTG
[SRA]
Identical group No.502966 (2 seq.)
>SRA1040048
SRR035091.26127
454 Sequencing (SRP001812)
34
107
+
His
GTG
[SRA]
>SRA1040052
SRR035091.27685
454 Sequencing (SRP001812)
34
107
+
His
GTG
[SRA]
Identical group No.502995 (1 seq.)
>SRA1040786
SRR035091.149954
454 Sequencing (SRP001812)
117
189
+
His
GTG
[SRA]
Identical group No.502999 (1 seq.)
>SRA1040956
SRR035091.173393
454 Sequencing (SRP001812)
280
351
+
His
GTG
[SRA]
Identical group No.503011 (1 seq.)
>SRA1041122
SRR035091.200299
454 Sequencing (SRP001812)
239
310
+
His
GTG
[SRA]
Identical group No.503019 (1 seq.)
>SRA1041337
SRR035091.229338
454 Sequencing (SRP001812)
371
443
+
His
GTG
[SRA]
Identical group No.503028 (1 seq.)
>SRA1041602
SRR035091.268538
454 Sequencing (SRP001812)
224
296
+
His
GTG
[SRA]
Identical group No.503056 (1 seq.)
>SRA1042305
SRR035091.369711
454 Sequencing (SRP001812)
78
150
+
His
GTG
[SRA]
Identical group No.503065 (1 seq.)
>SRA1042569
SRR035091.409967
454 Sequencing (SRP001812)
340
268
-
His
GTG
[SRA]
Identical group No.503076 (1 seq.)
>SRA1042893
SRR035091.462302
454 Sequencing (SRP001812)
106
34
-
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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