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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = GTT
HIT:
37 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243007 (1 seq.)
>SRA1040248
SRR035091.64941
454 Sequencing (SRP001812)
356
281
-
Asn
GTT
[SRA]
Identical group No.243019 (1 seq.)
>SRA1040351
SRR035091.83221
454 Sequencing (SRP001812)
108
33
-
Asn
GTT
[SRA]
Identical group No.243026 (1 seq.)
>SRA1040509
SRR035091.107333
454 Sequencing (SRP001812)
250
175
-
Asn
GTT
[SRA]
Identical group No.243033 (1 seq.)
>SRA1040600
SRR035091.121536
454 Sequencing (SRP001812)
272
347
+
Asn
GTT
[SRA]
Identical group No.243169 (1 seq.)
>SRA1042954
SRR035091.473113
454 Sequencing (SRP001812)
135
210
+
Asn
GTT
[SRA]
Identical group No.355313 (1 seq.)
>SRA1039970
SRR035091.3245
454 Sequencing (SRP001812)
253
327
+
Asn
GTT
[SRA]
Identical group No.355316 (1 seq.)
>SRA1040011
SRR035091.16980
454 Sequencing (SRP001812)
88
13
-
Asn
GTT
[SRA]
Identical group No.355326 (1 seq.)
>SRA1040123
SRR035091.42742
454 Sequencing (SRP001812)
56
131
+
Asn
GTT
[SRA]
Identical group No.355333 (1 seq.)
>SRA1040159
SRR035091.50233
454 Sequencing (SRP001812)
339
413
+
Asn
GTT
[SRA]
Identical group No.355349 (1 seq.)
>SRA1040395
SRR035091.90040
454 Sequencing (SRP001812)
309
235
-
Asn
GTT
[SRA]
Identical group No.355369 (1 seq.)
>SRA1040645
SRR035091.126714
454 Sequencing (SRP001812)
116
44
-
Asn
GTT
[SRA]
Identical group No.355395 (1 seq.)
>SRA1040919
SRR035091.169358
454 Sequencing (SRP001812)
387
312
-
Asn
GTT
[SRA]
Identical group No.355413 (2 seq.)
>SRA1041172
SRR035091.208597
454 Sequencing (SRP001812)
349
277
-
Asn
GTT
[SRA]
>SRA1041394
SRR035091.236796
454 Sequencing (SRP001812)
347
275
-
Asn
GTT
[SRA]
Identical group No.355423 (1 seq.)
>SRA1041298
SRR035091.224940
454 Sequencing (SRP001812)
290
365
+
Asn
GTT
[SRA]
Identical group No.355424 (1 seq.)
>SRA1041304
SRR035091.225643
454 Sequencing (SRP001812)
509
435
-
Asn
GTT
[SRA]
Identical group No.355438 (1 seq.)
>SRA1041585
SRR035091.265089
454 Sequencing (SRP001812)
226
300
+
Asn
GTT
[SRA]
Identical group No.355456 (1 seq.)
>SRA1041955
SRR035091.318142
454 Sequencing (SRP001812)
257
332
+
Asn
GTT
[SRA]
Identical group No.355485 (1 seq.)
>SRA1042380
SRR035091.379629
454 Sequencing (SRP001812)
223
148
-
Asn
GTT
[SRA]
Identical group No.355491 (1 seq.)
>SRA1042458
SRR035091.389437
454 Sequencing (SRP001812)
550
477
-
Asn
GTT
[SRA]
Identical group No.355529 (1 seq.)
>SRA1042935
SRR035091.470253
454 Sequencing (SRP001812)
96
21
-
Asn
GTT
[SRA]
Identical group No.448017 (1 seq.)
>SRA1040007
SRR035091.16353
454 Sequencing (SRP001812)
228
154
-
Asn
GTT
[SRA]
Identical group No.448025 (1 seq.)
>SRA1040128
SRR035091.44467
454 Sequencing (SRP001812)
162
90
-
Asn
GTT
[SRA]
Identical group No.448043 (1 seq.)
>SRA1040379
SRR035091.87348
454 Sequencing (SRP001812)
185
113
-
Asn
GTT
[SRA]
Identical group No.448045 (1 seq.)
>SRA1040410
SRR035091.93955
454 Sequencing (SRP001812)
203
130
-
Asn
GTT
[SRA]
Identical group No.448061 (1 seq.)
>SRA1040525
SRR035091.109908
454 Sequencing (SRP001812)
284
212
-
Asn
GTT
[SRA]
Identical group No.448082 (1 seq.)
>SRA1040775
SRR035091.147925
454 Sequencing (SRP001812)
332
405
+
Asn
GTT
[SRA]
Identical group No.448095 (1 seq.)
>SRA1040948
SRR035091.172669
454 Sequencing (SRP001812)
18
92
+
Asn
GTT
[SRA]
Identical group No.448096 (2 seq.)
>SRA1040965
SRR035091.175352
454 Sequencing (SRP001812)
182
257
+
Asn
GTT
[SRA]
>SRA1041260
SRR035091.220683
454 Sequencing (SRP001812)
182
257
+
Asn
GTT
[SRA]
Identical group No.448121 (1 seq.)
>SRA1041376
SRR035091.234696
454 Sequencing (SRP001812)
529
455
-
Asn
GTT
[SRA]
Identical group No.448122 (1 seq.)
>SRA1041387
SRR035091.235803
454 Sequencing (SRP001812)
407
333
-
Asn
GTT
[SRA]
Identical group No.448123 (2 seq.)
>SRA1041430
SRR035091.240954
454 Sequencing (SRP001812)
67
141
+
Asn
GTT
[SRA]
>SRA1041542
SRR035091.258233
454 Sequencing (SRP001812)
67
141
+
Asn
GTT
[SRA]
Identical group No.448131 (1 seq.)
>SRA1041550
SRR035091.259050
454 Sequencing (SRP001812)
147
219
+
Asn
GTT
[SRA]
Identical group No.448178 (1 seq.)
>SRA1042314
SRR035091.371093
454 Sequencing (SRP001812)
47
121
+
Asn
GTT
[SRA]
Identical group No.448184 (1 seq.)
>SRA1042456
SRR035091.388820
454 Sequencing (SRP001812)
462
388
-
Asn
GTT
[SRA]
Identical group No.503008 (1 seq.)
>SRA1041076
SRR035091.192835
454 Sequencing (SRP001812)
147
219
+
Asn
GTT
[SRA]
Identical group No.503012 (1 seq.)
>SRA1041195
SRR035091.212070
454 Sequencing (SRP001812)
181
111
-
Asn
GTT
[SRA]
Identical group No.503016 (1 seq.)
>SRA1041279
SRR035091.222498
454 Sequencing (SRP001812)
165
92
-
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK