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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TAG
HIT:
39 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26127 (1 seq.)
>SRA1040531
SRR035091.110280
454 Sequencing (SRP001812)
462
371
-
Leu
TAG
[SRA]
Identical group No.52458 (1 seq.)
>SRA1041239
SRR035091.218630
454 Sequencing (SRP001812)
430
343
-
Leu
TAG
[SRA]
Identical group No.52464 (1 seq.)
>SRA1041992
SRR035091.324071
454 Sequencing (SRP001812)
219
133
-
Leu
TAG
[SRA]
Identical group No.66482 (1 seq.)
>SRA1040832
SRR035091.157471
454 Sequencing (SRP001812)
233
320
+
Leu
TAG
[SRA]
Identical group No.66483 (1 seq.)
>SRA1040838
SRR035091.158531
454 Sequencing (SRP001812)
289
205
-
Leu
TAG
[SRA]
Identical group No.66484 (1 seq.)
>SRA1041045
SRR035091.187202
454 Sequencing (SRP001812)
411
325
-
Leu
TAG
[SRA]
Identical group No.66501 (1 seq.)
>SRA1042678
SRR035091.428779
454 Sequencing (SRP001812)
461
377
-
Leu
TAG
[SRA]
Identical group No.66502 (1 seq.)
>SRA1042849
SRR035091.455088
454 Sequencing (SRP001812)
54
141
+
Leu
TAG
[SRA]
Identical group No.66503 (1 seq.)
>SRA1042912
SRR035091.466382
454 Sequencing (SRP001812)
311
397
+
Leu
TAG
[SRA]
Identical group No.89575 (1 seq.)
>SRA1040217
SRR035091.60825
454 Sequencing (SRP001812)
50
133
+
Leu
TAG
[SRA]
Identical group No.89595 (1 seq.)
>SRA1041140
SRR035091.203658
454 Sequencing (SRP001812)
125
209
+
Leu
TAG
[SRA]
Identical group No.89598 (1 seq.)
>SRA1041263
SRR035091.220913
454 Sequencing (SRP001812)
189
274
+
Leu
TAG
[SRA]
Identical group No.89599 (1 seq.)
>SRA1041512
SRR035091.253340
454 Sequencing (SRP001812)
408
322
-
Leu
TAG
[SRA]
Identical group No.89600 (1 seq.)
>SRA1041622
SRR035091.270302
454 Sequencing (SRP001812)
103
187
+
Leu
TAG
[SRA]
Identical group No.89601 (1 seq.)
>SRA1041649
SRR035091.273652
454 Sequencing (SRP001812)
54
140
+
Leu
TAG
[SRA]
Identical group No.89606 (1 seq.)
>SRA1041940
SRR035091.317086
454 Sequencing (SRP001812)
95
12
-
Leu
TAG
[SRA]
Identical group No.89607 (2 seq.)
>SRA1041970
SRR035091.320906
454 Sequencing (SRP001812)
260
174
-
Leu
TAG
[SRA]
>SRA1042672
SRR035091.427992
454 Sequencing (SRP001812)
260
174
-
Leu
TAG
[SRA]
Identical group No.89612 (1 seq.)
>SRA1042210
SRR035091.356336
454 Sequencing (SRP001812)
232
147
-
Leu
TAG
[SRA]
Identical group No.89615 (1 seq.)
>SRA1042306
SRR035091.369894
454 Sequencing (SRP001812)
101
185
+
Leu
TAG
[SRA]
Identical group No.89616 (1 seq.)
>SRA1042351
SRR035091.375882
454 Sequencing (SRP001812)
177
91
-
Leu
TAG
[SRA]
Identical group No.110781 (1 seq.)
>SRA1042064
SRR035091.333378
454 Sequencing (SRP001812)
438
353
-
Leu
TAG
[SRA]
Identical group No.110785 (1 seq.)
>SRA1042549
SRR035091.406893
454 Sequencing (SRP001812)
134
49
-
Leu
TAG
[SRA]
Identical group No.110788 (1 seq.)
>SRA1042772
SRR035091.444333
454 Sequencing (SRP001812)
56
140
+
Leu
TAG
[SRA]
Identical group No.110794 (1 seq.)
>SRA1041370
SRR035091.233735
454 Sequencing (SRP001812)
205
120
-
Leu
TAG
[SRA]
Identical group No.132283 (1 seq.)
>SRA1040266
SRR035091.69341
454 Sequencing (SRP001812)
341
257
-
Leu
TAG
[SRA]
Identical group No.132287 (2 seq.)
>SRA1040421
SRR035091.95395
454 Sequencing (SRP001812)
307
391
+
Leu
TAG
[SRA]
>SRA1042697
SRR035091.431251
454 Sequencing (SRP001812)
48
132
+
Leu
TAG
[SRA]
Identical group No.132293 (1 seq.)
>SRA1040907
SRR035091.167660
454 Sequencing (SRP001812)
181
97
-
Leu
TAG
[SRA]
Identical group No.132294 (1 seq.)
>SRA1040995
SRR035091.179475
454 Sequencing (SRP001812)
239
155
-
Leu
TAG
[SRA]
Identical group No.132297 (1 seq.)
>SRA1041278
SRR035091.222411
454 Sequencing (SRP001812)
20
104
+
Leu
TAG
[SRA]
Identical group No.132298 (1 seq.)
>SRA1041403
SRR035091.237679
454 Sequencing (SRP001812)
342
426
+
Leu
TAG
[SRA]
Identical group No.132302 (1 seq.)
>SRA1041849
SRR035091.304230
454 Sequencing (SRP001812)
215
298
+
Leu
TAG
[SRA]
Identical group No.132307 (1 seq.)
>SRA1042557
SRR035091.408750
454 Sequencing (SRP001812)
107
24
-
Leu
TAG
[SRA]
Identical group No.132310 (1 seq.)
>SRA1040137
SRR035091.45856
454 Sequencing (SRP001812)
82
166
+
Leu
TAG
[SRA]
Identical group No.132313 (1 seq.)
>SRA1042828
SRR035091.451480
454 Sequencing (SRP001812)
294
212
-
Leu
TAG
[SRA]
Identical group No.145017 (1 seq.)
>SRA1040188
SRR035091.55034
454 Sequencing (SRP001812)
275
195
-
Leu
TAG
[SRA]
Identical group No.145023 (1 seq.)
>SRA1042241
SRR035091.360934
454 Sequencing (SRP001812)
379
296
-
Leu
TAG
[SRA]
Identical group No.154174 (1 seq.)
>SRA1041351
SRR035091.231086
454 Sequencing (SRP001812)
275
197
-
Leu
TAG
[SRA]
Identical group No.167938 (1 seq.)
>SRA1041443
SRR035091.242774
454 Sequencing (SRP001812)
80
5
-
Leu
TAG
[SRA]
Identical group No.355362 (1 seq.)
>SRA1040561
SRR035091.115447
454 Sequencing (SRP001812)
230
157
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK