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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TAT
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.9993 (3 seq.)
>WENV170612478
FUWD012620276
[FUWD] metagenome; unknown
182
89
-
Ile
TAT
[ENA]
¢þ
>SRA1041431
SRR035091.240974
454 Sequencing (SRP001812)
281
188
-
Ile
TAT
[SRA]
>SRA1043751
SRR035092.170366
454 Sequencing (SRP001813)
194
101
-
Ile
TAT
[SRA]
Identical group No.244422 (9 seq.)
>WENV170626922
FUWD013230100
[FUWD] metagenome; unknown
9971
9894
-
Ile
TAT
[ENA]
¢þ
>WENV170630701
FUWD013321255
[FUWD] metagenome; unknown
8263
8340
+
Ile
TAT
[ENA]
¢þ
>SRA1028797
SRR035087.9030
454 Sequencing (SRP001808)
95
18
-
Ile
TAT
[SRA]
>SRA1040154
SRR035091.49270
454 Sequencing (SRP001812)
449
524
+
Ile
TAT
[SRA]
>SRA1043532
SRR035092.134015
454 Sequencing (SRP001813)
180
103
-
Ile
TAT
[SRA]
>SRA1044327
SRR035092.260768
454 Sequencing (SRP001813)
356
279
-
Ile
TAT
[SRA]
>SRA1048085
SRR035094.106120
454 Sequencing (SRP001815)
95
172
+
Ile
TAT
[SRA]
>SRA1048333
SRR035094.149434
454 Sequencing (SRP001815)
185
108
-
Ile
TAT
[SRA]
>SRA1048490
SRR035094.185453
454 Sequencing (SRP001815)
130
55
-
Ile
TAT
[SRA]
Identical group No.249877 (2 seq.)
>WENV170218409
CEPZ01006028
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5671
5747
+
Ile
TAT
[ENA]
¢þ
>SRA1040690
SRR035091.133735
454 Sequencing (SRP001812)
350
426
+
Ile
TAT
[SRA]
Identical group No.254074 (5 seq.)
>WENV170608131
FUWD010895685
[FUWD] metagenome; unknown
315
240
-
Ile
TAT
[ENA]
¢þ
>SRA1032755
SRR035088.95246
454 Sequencing (SRP001809)
207
282
+
Ile
TAT
[SRA]
>SRA1041655
SRR035091.275026
454 Sequencing (SRP001812)
152
77
-
Ile
TAT
[SRA]
>SRA1042850
SRR035091.455295
454 Sequencing (SRP001812)
153
78
-
Ile
TAT
[SRA]
>SRA1045008
SRR035092.390947
454 Sequencing (SRP001813)
175
250
+
Ile
TAT
[SRA]
Identical group No.256239 (2 seq.)
>SRA1042740
SRR035091.438659
454 Sequencing (SRP001812)
270
345
+
Ile
TAT
[SRA]
>SRA1043337
SRR035092.98120
454 Sequencing (SRP001813)
339
414
+
Ile
TAT
[SRA]
Identical group No.300694 (7 seq.)
>WENV170621637
FUWD013066765
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>WENV170629826
FUWD013282718
[FUWD] metagenome; unknown
1659
1735
+
Ile
TAT
[ENA]
¢þ
>SRA1019155
SRR035082.410558
454 Sequencing (SRP001803)
67
143
+
Ile
TAT
[SRA]
>SRA1031529
SRR035087.444937
454 Sequencing (SRP001808)
287
211
-
Ile
TAT
[SRA]
>SRA1032513
SRR035088.34449
454 Sequencing (SRP001809)
251
175
-
Ile
TAT
[SRA]
>SRA1041942
SRR035091.317149
454 Sequencing (SRP001812)
252
176
-
Ile
TAT
[SRA]
>SRA1050136
SRR035095.198102
454 Sequencing (SRP001816)
287
363
+
Ile
TAT
[SRA]
Identical group No.357715 (8 seq.)
>WENV170603435
FUWD010309025
[FUWD] metagenome; unknown
318
394
+
Ile
TAT
[ENA]
¢þ
>WENV170623231
FUWD013142461
[FUWD] metagenome; unknown
827
903
+
Ile
TAT
[ENA]
¢þ
>WENV170631487
FUWD013354677
[FUWD] metagenome; unknown
827
903
+
Ile
TAT
[ENA]
¢þ
>SRA1017061
SRR035082.73932
454 Sequencing (SRP001803)
191
115
-
Ile
TAT
[SRA]
>SRA1019464
SRR035082.461338
454 Sequencing (SRP001803)
255
179
-
Ile
TAT
[SRA]
>SRA1042580
SRR035091.411238
454 Sequencing (SRP001812)
163
87
-
Ile
TAT
[SRA]
>SRA1047876
SRR035094.59806
454 Sequencing (SRP001815)
336
260
-
Ile
TAT
[SRA]
>SRA1048946
SRR035094.294201
454 Sequencing (SRP001815)
362
286
-
Ile
TAT
[SRA]
Identical group No.357987 (3 seq.)
>WENV170608090
FUWD010892339
[FUWD] metagenome; unknown
196
272
+
Ile
TAT
[ENA]
¢þ
>SRA1040044
SRR035091.25310
454 Sequencing (SRP001812)
34
110
+
Ile
TAT
[SRA]
>SRA1041184
SRR035091.209800
454 Sequencing (SRP001812)
171
95
-
Ile
TAT
[SRA]
Identical group No.358781 (5 seq.)
>WENV170622797
FUWD013121162
[FUWD] metagenome; unknown
539
613
+
Ile
TAT
[ENA]
¢þ
>WENV170631010
FUWD013334912
[FUWD] metagenome; unknown
539
613
+
Ile
TAT
[ENA]
¢þ
>SRA1041214
SRR035091.214245
454 Sequencing (SRP001812)
49
123
+
Ile
TAT
[SRA]
>SRA1041826
SRR035091.300804
454 Sequencing (SRP001812)
344
418
+
Ile
TAT
[SRA]
>SRA1044860
SRR035092.360121
454 Sequencing (SRP001813)
152
78
-
Ile
TAT
[SRA]
Identical group No.358845 (4 seq.)
>WENV170623597
FUWD013159760
[FUWD] metagenome; unknown
753
829
+
Ile
TAT
[ENA]
¢þ
>WENV170631874
FUWD013369256
[FUWD] metagenome; unknown
753
829
+
Ile
TAT
[ENA]
¢þ
>SRA1040122
SRR035091.42537
454 Sequencing (SRP001812)
119
195
+
Ile
TAT
[SRA]
>SRA1048602
SRR035094.207542
454 Sequencing (SRP001815)
40
116
+
Ile
TAT
[SRA]
Identical group No.372000 (2 seq.)
>SRA1042670
SRR035091.427949
454 Sequencing (SRP001812)
74
1
-
Ile
TAT
[SRA]
>SRA1043788
SRR035092.175778
454 Sequencing (SRP001813)
195
121
-
Ile
TAT
[SRA]
Identical group No.453453 (8 seq.)
>WENV170620733
FUWD013037905
[FUWD] metagenome; unknown
627
552
-
Ile
TAT
[ENA]
¢þ
>WENV170628876
FUWD013255122
[FUWD] metagenome; unknown
627
552
-
Ile
TAT
[ENA]
¢þ
>SRA1026825
SRR035085.304180
454 Sequencing (SRP001806)
116
41
-
Ile
TAT
[SRA]
>SRA1041059
SRR035091.189447
454 Sequencing (SRP001812)
363
438
+
Ile
TAT
[SRA]
>SRA1042303
SRR035091.369630
454 Sequencing (SRP001812)
160
85
-
Ile
TAT
[SRA]
>SRA1042807
SRR035091.449880
454 Sequencing (SRP001812)
361
436
+
Ile
TAT
[SRA]
>SRA1043900
SRR035092.191899
454 Sequencing (SRP001813)
500
425
-
Ile
TAT
[SRA]
>SRA1050262
SRR035095.224059
454 Sequencing (SRP001816)
138
63
-
Ile
TAT
[SRA]
Identical group No.453874 (9 seq.)
>WENV170623314
FUWD013145576
[FUWD] metagenome; unknown
667
742
+
Ile
TAT
[ENA]
¢þ
>WENV170631577
FUWD013357538
[FUWD] metagenome; unknown
667
742
+
Ile
TAT
[ENA]
¢þ
>SRA1031994
SRR035087.527968
454 Sequencing (SRP001808)
95
170
+
Ile
TAT
[SRA]
>SRA1036595
SRR035089.558034
454 Sequencing (SRP001810)
30
105
+
Ile
TAT
[SRA]
>SRA1041369
SRR035091.233580
454 Sequencing (SRP001812)
393
318
-
Ile
TAT
[SRA]
>SRA1041805
SRR035091.297467
454 Sequencing (SRP001812)
296
371
+
Ile
TAT
[SRA]
>SRA1041924
SRR035091.315924
454 Sequencing (SRP001812)
95
20
-
Ile
TAT
[SRA]
>SRA1041993
SRR035091.324146
454 Sequencing (SRP001812)
294
219
-
Ile
TAT
[SRA]
>SRA1042343
SRR035091.374918
454 Sequencing (SRP001812)
393
318
-
Ile
TAT
[SRA]
Identical group No.484202 (7 seq.)
>WENV170626782
FUWD013229450
[FUWD] metagenome; unknown
5561
5634
+
Ile
TAT
[ENA]
¢þ
>SRA1029804
SRR035087.184171
454 Sequencing (SRP001808)
258
331
+
Ile
TAT
[SRA]
>SRA1040569
SRR035091.116420
454 Sequencing (SRP001812)
206
133
-
Ile
TAT
[SRA]
>SRA1040928
SRR035091.170399
454 Sequencing (SRP001812)
206
133
-
Ile
TAT
[SRA]
>SRA1041432
SRR035091.240994
454 Sequencing (SRP001812)
122
195
+
Ile
TAT
[SRA]
>SRA1041437
SRR035091.242145
454 Sequencing (SRP001812)
134
61
-
Ile
TAT
[SRA]
>SRA1042443
SRR035091.387258
454 Sequencing (SRP001812)
124
197
+
Ile
TAT
[SRA]
Identical group No.547810 (5 seq.)
>WENV170605194
FUWD010457574
[FUWD] metagenome; unknown
218
144
-
Ile
TAT
[ENA]
¢þ
>SRA1041067
SRR035091.190991
454 Sequencing (SRP001812)
80
6
-
Ile
TAT
[SRA]
>SRA1042921
SRR035091.467691
454 Sequencing (SRP001812)
176
102
-
Ile
TAT
[SRA]
>SRA1042936
SRR035091.470265
454 Sequencing (SRP001812)
84
10
-
Ile
TAT
[SRA]
>SRA1043169
SRR035092.62691
454 Sequencing (SRP001813)
218
144
-
Ile
TAT
[SRA]
Identical group No.548000 (2 seq.)
>WENV170608164
FUWD010897684
[FUWD] metagenome; unknown
503
578
+
Ile
TAT
[ENA]
¢þ
>SRA1040800
SRR035091.151405
454 Sequencing (SRP001812)
335
410
+
Ile
TAT
[SRA]
Identical group No.548361 (4 seq.)
>WENV170612410
FUWD012605026
[FUWD] metagenome; unknown
324
249
-
Ile
TAT
[ENA]
¢þ
>SRA1040207
SRR035091.58312
454 Sequencing (SRP001812)
118
193
+
Ile
TAT
[SRA]
>SRA1040300
SRR035091.74564
454 Sequencing (SRP001812)
324
249
-
Ile
TAT
[SRA]
>SRA1042605
SRR035091.414914
454 Sequencing (SRP001812)
120
195
+
Ile
TAT
[SRA]
Identical group No.548377 (2 seq.)
>WENV170612486
FUWD012621666
[FUWD] metagenome; unknown
20
95
+
Ile
TAT
[ENA]
¢þ
>SRA1041536
SRR035091.257589
454 Sequencing (SRP001812)
20
95
+
Ile
TAT
[SRA]
Identical group No.548817 (4 seq.)
>WENV170623047
FUWD013134301
[FUWD] metagenome; unknown
1272
1345
+
Ile
TAT
[ENA]
¢þ
>WENV170631281
FUWD013347325
[FUWD] metagenome; unknown
1272
1345
+
Ile
TAT
[ENA]
¢þ
>SRA1019647
SRR035082.495007
454 Sequencing (SRP001803)
23
96
+
Ile
TAT
[SRA]
>SRA1040835
SRR035091.157893
454 Sequencing (SRP001812)
156
229
+
Ile
TAT
[SRA]
Identical group No.563065 (3 seq.)
>W131193255
ASNW01000003
Unclassified
Parcubacteria bacterium SCGC AB-164-E21 OD1 bacterium SCGC AB-164-E21 [ASNW]
17861
17934
+
Ile
TAT
[ENA]
¡û
>SRA1041222
SRR035091.215834
454 Sequencing (SRP001812)
88
15
-
Ile
TAT
[SRA]
>SRA1049208
SRR035095.38318
454 Sequencing (SRP001816)
197
270
+
Ile
TAT
[SRA]
Identical group No.654396 (7 seq.)
>WENV170627295
FUWD013232509
[FUWD] metagenome; unknown
11617
11543
-
Ile
TAT
[ENA]
¢þ
>SRA1026671
SRR035085.254813
454 Sequencing (SRP001806)
313
239
-
Ile
TAT
[SRA]
>SRA1032829
SRR035088.110724
454 Sequencing (SRP001809)
149
223
+
Ile
TAT
[SRA]
>SRA1034947
SRR035089.204904
454 Sequencing (SRP001810)
44
118
+
Ile
TAT
[SRA]
>SRA1040736
SRR035091.140683
454 Sequencing (SRP001812)
188
262
+
Ile
TAT
[SRA]
>SRA1041564
SRR035091.261630
454 Sequencing (SRP001812)
295
221
-
Ile
TAT
[SRA]
>SRA1042611
SRR035091.416248
454 Sequencing (SRP001812)
24
98
+
Ile
TAT
[SRA]
Identical group No.654654 (7 seq.)
>WENV170621494
FUWD013061124
[FUWD] metagenome; unknown
1221
1292
+
Ile
TAT
[ENA]
¢þ
>WENV170629677
FUWD013277329
[FUWD] metagenome; unknown
1497
1426
-
Ile
TAT
[ENA]
¢þ
>SRA1027885
SRR035086.212222
454 Sequencing (SRP001807)
159
88
-
Ile
TAT
[SRA]
>SRA1036727
SRR035089.596089
454 Sequencing (SRP001810)
60
131
+
Ile
TAT
[SRA]
>SRA1040891
SRR035091.164604
454 Sequencing (SRP001812)
123
194
+
Ile
TAT
[SRA]
>SRA1048587
SRR035094.204025
454 Sequencing (SRP001815)
256
185
-
Ile
TAT
[SRA]
>SRA1053282
SRR035098.374223
454 Sequencing (SRP001819)
496
425
-
Ile
TAT
[SRA]
Identical group No.672425 (2 seq.)
>SRA1030250
SRR035087.249402
454 Sequencing (SRP001808)
81
153
+
Ile
TAT
[SRA]
>SRA1042700
SRR035091.431903
454 Sequencing (SRP001812)
122
50
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK