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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301 (1 seq.)
>SRA1041997
SRR035091.325263
454 Sequencing (SRP001812)
223
321
+
SeC
TCA
[SRA]
Identical group No.4562 (4 seq.)
>WENV170571177
FLOH01000086
[FLOH] marine metagenome; water
49623
49717
+
SeC
TCA
[ENA]
¢þ
>WENV170571410
FLOH01000152
[FLOH] marine metagenome; water
31080
30986
-
SeC
TCA
[ENA]
¢þ
>WENV170609314
FUWD011370546
[FUWD] metagenome; unknown
346
252
-
SeC
TCA
[ENA]
¢þ
>SRA1040708
SRR035091.135453
454 Sequencing (SRP001812)
10
104
+
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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