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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TCC
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243032 (2 seq.)
>SRA1040571
SRR035091.116906
454 Sequencing (SRP001812)
315
242
-
Gly
TCC
[SRA]
>SRA1040579
SRR035091.118457
454 Sequencing (SRP001812)
314
241
-
Gly
TCC
[SRA]
Identical group No.243083 (1 seq.)
>SRA1041444
SRR035091.242971
454 Sequencing (SRP001812)
549
475
-
Gly
TCC
[SRA]
Identical group No.355350 (1 seq.)
>SRA1040409
SRR035091.93704
454 Sequencing (SRP001812)
312
237
-
Gly
TCC
[SRA]
Identical group No.355384 (1 seq.)
>SRA1040790
SRR035091.150256
454 Sequencing (SRP001812)
221
147
-
Gly
TCC
[SRA]
Identical group No.355419 (1 seq.)
>SRA1041254
SRR035091.220309
454 Sequencing (SRP001812)
336
261
-
Gly
TCC
[SRA]
Identical group No.355458 (1 seq.)
>SRA1041994
SRR035091.324355
454 Sequencing (SRP001812)
90
17
-
Gly
TCC
[SRA]
Identical group No.355474 (1 seq.)
>SRA1042269
SRR035091.365143
454 Sequencing (SRP001812)
482
406
-
Gly
TCC
[SRA]
Identical group No.355510 (1 seq.)
>SRA1042677
SRR035091.428546
454 Sequencing (SRP001812)
284
209
-
Gly
TCC
[SRA]
Identical group No.448065 (1 seq.)
>SRA1040542
SRR035091.112693
454 Sequencing (SRP001812)
390
316
-
Gly
TCC
[SRA]
Identical group No.448071 (1 seq.)
>SRA1040622
SRR035091.123595
454 Sequencing (SRP001812)
345
418
+
Gly
TCC
[SRA]
Identical group No.448078 (1 seq.)
>SRA1040707
SRR035091.135314
454 Sequencing (SRP001812)
153
227
+
Gly
TCC
[SRA]
Identical group No.448087 (1 seq.)
>SRA1040820
SRR035091.154010
454 Sequencing (SRP001812)
255
327
+
Gly
TCC
[SRA]
Identical group No.448099 (1 seq.)
>SRA1041019
SRR035091.182492
454 Sequencing (SRP001812)
376
448
+
Gly
TCC
[SRA]
Identical group No.448100 (2 seq.)
>SRA1041021
SRR035091.183391
454 Sequencing (SRP001812)
112
38
-
Gly
TCC
[SRA]
>SRA1042355
SRR035091.376371
454 Sequencing (SRP001812)
23
97
+
Gly
TCC
[SRA]
Identical group No.448108 (1 seq.)
>SRA1041164
SRR035091.207385
454 Sequencing (SRP001812)
454
527
+
Gly
TCC
[SRA]
Identical group No.448124 (1 seq.)
>SRA1041468
SRR035091.246098
454 Sequencing (SRP001812)
48
122
+
Gly
TCC
[SRA]
Identical group No.448152 (1 seq.)
>SRA1041870
SRR035091.307642
454 Sequencing (SRP001812)
283
209
-
Gly
TCC
[SRA]
Identical group No.448154 (1 seq.)
>SRA1041911
SRR035091.315114
454 Sequencing (SRP001812)
208
134
-
Gly
TCC
[SRA]
Identical group No.448160 (1 seq.)
>SRA1041988
SRR035091.323671
454 Sequencing (SRP001812)
151
225
+
Gly
TCC
[SRA]
Identical group No.448166 (1 seq.)
>SRA1042113
SRR035091.340419
454 Sequencing (SRP001812)
273
199
-
Gly
TCC
[SRA]
Identical group No.448175 (1 seq.)
>SRA1042211
SRR035091.356455
454 Sequencing (SRP001812)
557
486
-
Gly
TCC
[SRA]
Identical group No.448182 (1 seq.)
>SRA1042406
SRR035091.383460
454 Sequencing (SRP001812)
244
317
+
Gly
TCC
[SRA]
Identical group No.448186 (1 seq.)
>SRA1042466
SRR035091.390986
454 Sequencing (SRP001812)
406
332
-
Gly
TCC
[SRA]
Identical group No.502980 (1 seq.)
>SRA1040341
SRR035091.81065
454 Sequencing (SRP001812)
42
113
+
Gly
TCC
[SRA]
Identical group No.502981 (1 seq.)
>SRA1040416
SRR035091.94872
454 Sequencing (SRP001812)
236
165
-
Gly
TCC
[SRA]
Identical group No.502986 (1 seq.)
>SRA1040524
SRR035091.109875
454 Sequencing (SRP001812)
61
133
+
Gly
TCC
[SRA]
Identical group No.502991 (1 seq.)
>SRA1040647
SRR035091.127107
454 Sequencing (SRP001812)
52
122
+
Gly
TCC
[SRA]
Identical group No.502993 (1 seq.)
>SRA1040660
SRR035091.129210
454 Sequencing (SRP001812)
333
263
-
Gly
TCC
[SRA]
Identical group No.503035 (1 seq.)
>SRA1041743
SRR035091.285820
454 Sequencing (SRP001812)
46
119
+
Gly
TCC
[SRA]
Identical group No.503043 (2 seq.)
>SRA1042038
SRR035091.331153
454 Sequencing (SRP001812)
194
266
+
Gly
TCC
[SRA]
>SRA1042730
SRR035091.436992
454 Sequencing (SRP001812)
243
171
-
Gly
TCC
[SRA]
Identical group No.503063 (1 seq.)
>SRA1042546
SRR035091.405829
454 Sequencing (SRP001812)
108
38
-
Gly
TCC
[SRA]
Identical group No.503068 (1 seq.)
>SRA1042638
SRR035091.420555
454 Sequencing (SRP001812)
386
316
-
Gly
TCC
[SRA]
Identical group No.503069 (1 seq.)
>SRA1042653
SRR035091.424354
454 Sequencing (SRP001812)
374
301
-
Gly
TCC
[SRA]
Identical group No.503079 (1 seq.)
>SRA1042908
SRR035091.465913
454 Sequencing (SRP001812)
89
19
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK