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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TCG
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167944 (1 seq.)
>SRA1041720
SRR035091.282609
454 Sequencing (SRP001812)
445
522
+
Arg
TCG
[SRA]
Identical group No.242997 (1 seq.)
>SRA1040046
SRR035091.25780
454 Sequencing (SRP001812)
105
29
-
Arg
TCG
[SRA]
Identical group No.243006 (1 seq.)
>SRA1040240
SRR035091.64593
454 Sequencing (SRP001812)
92
16
-
Arg
TCG
[SRA]
Identical group No.243037 (1 seq.)
>SRA1040652
SRR035091.127656
454 Sequencing (SRP001812)
316
392
+
Arg
TCG
[SRA]
Identical group No.243053 (2 seq.)
>SRA1040883
SRR035091.163598
454 Sequencing (SRP001812)
299
223
-
Arg
TCG
[SRA]
>SRA1041001
SRR035091.180397
454 Sequencing (SRP001812)
299
223
-
Arg
TCG
[SRA]
Identical group No.243058 (1 seq.)
>SRA1040941
SRR035091.171278
454 Sequencing (SRP001812)
157
83
-
Arg
TCG
[SRA]
Identical group No.243065 (1 seq.)
>SRA1041083
SRR035091.193933
454 Sequencing (SRP001812)
140
66
-
Arg
TCG
[SRA]
Identical group No.243100 (1 seq.)
>SRA1041674
SRR035091.277336
454 Sequencing (SRP001812)
153
226
+
Arg
TCG
[SRA]
Identical group No.243107 (1 seq.)
>SRA1041790
SRR035091.295342
454 Sequencing (SRP001812)
268
193
-
Arg
TCG
[SRA]
Identical group No.243147 (1 seq.)
>SRA1042589
SRR035091.412850
454 Sequencing (SRP001812)
174
249
+
Arg
TCG
[SRA]
Identical group No.243151 (1 seq.)
>SRA1042689
SRR035091.430525
454 Sequencing (SRP001812)
175
102
-
Arg
TCG
[SRA]
Identical group No.243153 (1 seq.)
>SRA1042723
SRR035091.435535
454 Sequencing (SRP001812)
44
120
+
Arg
TCG
[SRA]
Identical group No.243166 (1 seq.)
>SRA1042913
SRR035091.466564
454 Sequencing (SRP001812)
252
327
+
Arg
TCG
[SRA]
Identical group No.243174 (1 seq.)
>SRA1041264
SRR035091.221109
454 Sequencing (SRP001812)
152
76
-
Arg
TCG
[SRA]
Identical group No.355325 (1 seq.)
>SRA1040117
SRR035091.41851
454 Sequencing (SRP001812)
330
258
-
Arg
TCG
[SRA]
Identical group No.355477 (1 seq.)
>SRA1042279
SRR035091.366936
454 Sequencing (SRP001812)
408
480
+
Arg
TCG
[SRA]
Identical group No.448016 (1 seq.)
>SRA1039999
SRR035091.13760
454 Sequencing (SRP001812)
44
117
+
Arg
TCG
[SRA]
Identical group No.448041 (1 seq.)
>SRA1040354
SRR035091.84505
454 Sequencing (SRP001812)
112
187
+
Arg
TCG
[SRA]
Identical group No.448044 (1 seq.)
>SRA1040403
SRR035091.92064
454 Sequencing (SRP001812)
389
318
-
Arg
TCG
[SRA]
Identical group No.448094 (3 seq.)
>SRA1040930
SRR035091.170447
454 Sequencing (SRP001812)
405
331
-
Arg
TCG
[SRA]
>SRA1040993
SRR035091.179175
454 Sequencing (SRP001812)
407
333
-
Arg
TCG
[SRA]
>SRA1041984
SRR035091.323186
454 Sequencing (SRP001812)
407
333
-
Arg
TCG
[SRA]
Identical group No.448109 (1 seq.)
>SRA1041167
SRR035091.207465
454 Sequencing (SRP001812)
195
121
-
Arg
TCG
[SRA]
Identical group No.448130 (2 seq.)
>SRA1041530
SRR035091.256375
454 Sequencing (SRP001812)
136
65
-
Arg
TCG
[SRA]
>SRA1042489
SRR035091.396180
454 Sequencing (SRP001812)
136
65
-
Arg
TCG
[SRA]
Identical group No.448146 (1 seq.)
>SRA1041765
SRR035091.290185
454 Sequencing (SRP001812)
137
211
+
Arg
TCG
[SRA]
Identical group No.448191 (1 seq.)
>SRA1042512
SRR035091.400413
454 Sequencing (SRP001812)
407
332
-
Arg
TCG
[SRA]
Identical group No.448212 (1 seq.)
>SRA1042793
SRR035091.448632
454 Sequencing (SRP001812)
152
224
+
Arg
TCG
[SRA]
Identical group No.448231 (1 seq.)
>SRA1041190
SRR035091.211087
454 Sequencing (SRP001812)
265
338
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK