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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TCG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254154 (3 seq.)
>WENV170612413
FUWD012605426
[FUWD] metagenome; unknown
183
106
-
Arg
TCG
[ENA]
¢þ
>SRA1040324
SRR035091.78844
454 Sequencing (SRP001812)
335
258
-
Arg
TCG
[SRA]
>SRA1043848
SRR035092.185320
454 Sequencing (SRP001813)
183
106
-
Arg
TCG
[SRA]
Identical group No.272300 (7 seq.)
>WENV170621492
FUWD013061040
[FUWD] metagenome; unknown
1638
1564
-
Arg
TCG
[ENA]
¢þ
>WENV170629674
FUWD013277251
[FUWD] metagenome; unknown
1638
1564
-
Arg
TCG
[ENA]
¢þ
>SRA1025744
SRR035085.74740
454 Sequencing (SRP001806)
311
237
-
Arg
TCG
[SRA]
>SRA1025947
SRR035085.114996
454 Sequencing (SRP001806)
335
261
-
Arg
TCG
[SRA]
>SRA1042195
SRR035091.352397
454 Sequencing (SRP001812)
157
83
-
Arg
TCG
[SRA]
>SRA1042317
SRR035091.371473
454 Sequencing (SRP001812)
402
476
+
Arg
TCG
[SRA]
>SRA1044190
SRR035092.238943
454 Sequencing (SRP001813)
162
236
+
Arg
TCG
[SRA]
Identical group No.300459 (17 seq.)
>WENV170600779
FUWD010142391
[FUWD] metagenome; unknown
173
97
-
Arg
TCG
[ENA]
¢þ
>WENV170625933
FUWD013209829
[FUWD] metagenome; unknown
290
366
+
Arg
TCG
[ENA]
¢þ
>WENV170634147
FUWD013411312
[FUWD] metagenome; unknown
290
366
+
Arg
TCG
[ENA]
¢þ
>SRA1017823
SRR035082.202976
454 Sequencing (SRP001803)
291
367
+
Arg
TCG
[SRA]
>SRA1019017
SRR035082.386933
454 Sequencing (SRP001803)
232
156
-
Arg
TCG
[SRA]
>SRA1019097
SRR035082.400811
454 Sequencing (SRP001803)
37
113
+
Arg
TCG
[SRA]
>SRA1030137
SRR035087.232565
454 Sequencing (SRP001808)
385
309
-
Arg
TCG
[SRA]
>SRA1041851
SRR035091.304846
454 Sequencing (SRP001812)
229
153
-
Arg
TCG
[SRA]
>SRA1047838
SRR035094.51526
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1047856
SRR035094.56510
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048015
SRR035094.89414
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048247
SRR035094.134307
454 Sequencing (SRP001815)
249
173
-
Arg
TCG
[SRA]
>SRA1048418
SRR035094.169337
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048511
SRR035094.190976
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048593
SRR035094.205125
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048727
SRR035094.235954
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
>SRA1048747
SRR035094.239901
454 Sequencing (SRP001815)
248
172
-
Arg
TCG
[SRA]
Identical group No.321229 (10 seq.)
>WENV170620212
FUWD013027450
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>WENV170628348
FUWD013245228
[FUWD] metagenome; unknown
7278
7202
-
Arg
TCG
[ENA]
¢þ
>SRA1032630
SRR035088.66998
454 Sequencing (SRP001809)
192
116
-
Arg
TCG
[SRA]
>SRA1033579
SRR035088.293243
454 Sequencing (SRP001809)
183
107
-
Arg
TCG
[SRA]
>SRA1040507
SRR035091.107240
454 Sequencing (SRP001812)
307
383
+
Arg
TCG
[SRA]
>SRA1040583
SRR035091.118691
454 Sequencing (SRP001812)
28
104
+
Arg
TCG
[SRA]
>SRA1040670
SRR035091.130488
454 Sequencing (SRP001812)
253
177
-
Arg
TCG
[SRA]
>SRA1041637
SRR035091.272435
454 Sequencing (SRP001812)
219
143
-
Arg
TCG
[SRA]
>SRA1050365
SRR035095.244956
454 Sequencing (SRP001816)
99
175
+
Arg
TCG
[SRA]
>SRA1054808
SRR035099.218877
454 Sequencing (SRP001820)
493
417
-
Arg
TCG
[SRA]
Identical group No.357538 (2 seq.)
>WENV170599259
FUWD010069059
[FUWD] metagenome; unknown
459
535
+
Arg
TCG
[ENA]
¢þ
>SRA1041252
SRR035091.220241
454 Sequencing (SRP001812)
346
424
+
Arg
TCG
[SRA]
Identical group No.358405 (3 seq.)
>WENV170612822
FUWD012696747
[FUWD] metagenome; unknown
102
176
+
Arg
TCG
[ENA]
¢þ
>SRA1042353
SRR035091.376037
454 Sequencing (SRP001812)
284
358
+
Arg
TCG
[SRA]
>SRA1049984
SRR035095.171778
454 Sequencing (SRP001816)
112
186
+
Arg
TCG
[SRA]
Identical group No.358700 (6 seq.)
>WENV170621655
FUWD013067588
[FUWD] metagenome; unknown
461
535
+
Arg
TCG
[ENA]
¢þ
>WENV170629846
FUWD013283431
[FUWD] metagenome; unknown
461
535
+
Arg
TCG
[ENA]
¢þ
>SRA1041391
SRR035091.236742
454 Sequencing (SRP001812)
305
231
-
Arg
TCG
[SRA]
>SRA1041717
SRR035091.282310
454 Sequencing (SRP001812)
430
356
-
Arg
TCG
[SRA]
>SRA1042323
SRR035091.372749
454 Sequencing (SRP001812)
65
139
+
Arg
TCG
[SRA]
>SRA1042629
SRR035091.419215
454 Sequencing (SRP001812)
238
164
-
Arg
TCG
[SRA]
Identical group No.358828 (4 seq.)
>WENV170623412
FUWD013150311
[FUWD] metagenome; unknown
458
382
-
Arg
TCG
[ENA]
¢þ
>WENV170631681
FUWD013361382
[FUWD] metagenome; unknown
458
382
-
Arg
TCG
[ENA]
¢þ
>SRA1019079
SRR035082.398299
454 Sequencing (SRP001803)
456
380
-
Arg
TCG
[SRA]
>SRA1041349
SRR035091.230921
454 Sequencing (SRP001812)
58
134
+
Arg
TCG
[SRA]
Identical group No.358914 (5 seq.)
>WENV170625997
FUWD013211219
[FUWD] metagenome; unknown
1268
1342
+
Arg
TCG
[ENA]
¢þ
>WENV170631942
FUWD013372929
[FUWD] metagenome; unknown
5257
5183
-
Arg
TCG
[ENA]
¢þ
>SRA1033857
SRR035088.379903
454 Sequencing (SRP001809)
256
330
+
Arg
TCG
[SRA]
>SRA1042267
SRR035091.364676
454 Sequencing (SRP001812)
229
303
+
Arg
TCG
[SRA]
>SRA1049381
SRR035095.67188
454 Sequencing (SRP001816)
208
134
-
Arg
TCG
[SRA]
Identical group No.372114 (2 seq.)
>SRA1041186
SRR035091.210720
454 Sequencing (SRP001812)
270
196
-
Arg
TCG
[SRA]
>SRA1045061
SRR035092.403110
454 Sequencing (SRP001813)
303
229
-
Arg
TCG
[SRA]
Identical group No.372140 (2 seq.)
>SRA1042409
SRR035091.383620
454 Sequencing (SRP001812)
208
283
+
Arg
TCG
[SRA]
>SRA1049328
SRR035095.57531
454 Sequencing (SRP001816)
201
276
+
Arg
TCG
[SRA]
Identical group No.563148 (2 seq.)
>SRA1042421
SRR035091.384902
454 Sequencing (SRP001812)
309
234
-
Arg
TCG
[SRA]
>SRA1050508
SRR035095.278784
454 Sequencing (SRP001816)
313
238
-
Arg
TCG
[SRA]
Identical group No.654469 (14 seq.)
>WENV170626803
FUWD013229616
[FUWD] metagenome; unknown
3279
3207
-
Arg
TCG
[ENA]
¢þ
>SRA1019337
SRR035082.437284
454 Sequencing (SRP001803)
259
331
+
Arg
TCG
[SRA]
>SRA1034701
SRR035089.155824
454 Sequencing (SRP001810)
520
448
-
Arg
TCG
[SRA]
>SRA1040138
SRR035091.46446
454 Sequencing (SRP001812)
128
200
+
Arg
TCG
[SRA]
>SRA1040597
SRR035091.121076
454 Sequencing (SRP001812)
53
125
+
Arg
TCG
[SRA]
>SRA1040962
SRR035091.175134
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1041103
SRR035091.196976
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1041682
SRR035091.277877
454 Sequencing (SRP001812)
394
322
-
Arg
TCG
[SRA]
>SRA1041935
SRR035091.316663
454 Sequencing (SRP001812)
81
153
+
Arg
TCG
[SRA]
>SRA1042092
SRR035091.337114
454 Sequencing (SRP001812)
579
507
-
Arg
TCG
[SRA]
>SRA1042561
SRR035091.409124
454 Sequencing (SRP001812)
144
72
-
Arg
TCG
[SRA]
>SRA1047860
SRR035094.56725
454 Sequencing (SRP001815)
200
128
-
Arg
TCG
[SRA]
>SRA1048113
SRR035094.112105
454 Sequencing (SRP001815)
355
427
+
Arg
TCG
[SRA]
>SRA1048225
SRR035094.130390
454 Sequencing (SRP001815)
199
127
-
Arg
TCG
[SRA]
Identical group No.654666 (14 seq.)
>WENV170598273
FUWD010030793
[FUWD] metagenome; unknown
425
352
-
Arg
TCG
[ENA]
¢þ
>WENV170627254
FUWD013232414
[FUWD] metagenome; unknown
16614
16687
+
Arg
TCG
[ENA]
¢þ
>SRA1029857
SRR035087.192877
454 Sequencing (SRP001808)
414
341
-
Arg
TCG
[SRA]
>SRA1035435
SRR035089.303245
454 Sequencing (SRP001810)
239
166
-
Arg
TCG
[SRA]
>SRA1040090
SRR035091.37284
454 Sequencing (SRP001812)
166
93
-
Arg
TCG
[SRA]
>SRA1041338
SRR035091.229546
454 Sequencing (SRP001812)
207
134
-
Arg
TCG
[SRA]
>SRA1042052
SRR035091.332692
454 Sequencing (SRP001812)
282
209
-
Arg
TCG
[SRA]
>SRA1047898
SRR035094.63993
454 Sequencing (SRP001815)
154
81
-
Arg
TCG
[SRA]
>SRA1048596
SRR035094.205672
454 Sequencing (SRP001815)
128
55
-
Arg
TCG
[SRA]
>SRA1049487
SRR035095.85304
454 Sequencing (SRP001816)
129
202
+
Arg
TCG
[SRA]
>SRA1049506
SRR035095.87814
454 Sequencing (SRP001816)
31
104
+
Arg
TCG
[SRA]
>SRA1049682
SRR035095.118550
454 Sequencing (SRP001816)
253
180
-
Arg
TCG
[SRA]
>SRA1049927
SRR035095.162111
454 Sequencing (SRP001816)
122
49
-
Arg
TCG
[SRA]
>SRA1050179
SRR035095.206778
454 Sequencing (SRP001816)
252
325
+
Arg
TCG
[SRA]
Identical group No.710809 (3 seq.)
>WENV170608112
FUWD010894601
[FUWD] metagenome; unknown
215
286
+
Arg
TCG
[ENA]
¢þ
>SRA1041057
SRR035091.189181
454 Sequencing (SRP001812)
78
149
+
Arg
TCG
[SRA]
>SRA1041096
SRR035091.195438
454 Sequencing (SRP001812)
245
316
+
Arg
TCG
[SRA]
Identical group No.711081 (3 seq.)
>WENV170612456
FUWD012614452
[FUWD] metagenome; unknown
78
4
-
Arg
TCG
[ENA]
¢þ
>SRA1040961
SRR035091.175129
454 Sequencing (SRP001812)
107
33
-
Arg
TCG
[SRA]
>SRA1044691
SRR035092.323107
454 Sequencing (SRP001813)
154
228
+
Arg
TCG
[SRA]
Identical group No.711088 (4 seq.)
>WENV170612532
FUWD012629812
[FUWD] metagenome; unknown
341
268
-
Arg
TCG
[ENA]
¢þ
>SRA1040026
SRR035091.20701
454 Sequencing (SRP001812)
8
81
+
Arg
TCG
[SRA]
>SRA1040485
SRR035091.104255
454 Sequencing (SRP001812)
8
81
+
Arg
TCG
[SRA]
>SRA1042265
SRR035091.364647
454 Sequencing (SRP001812)
354
281
-
Arg
TCG
[SRA]
Identical group No.711114 (5 seq.)
>WENV170612685
FUWD012657873
[FUWD] metagenome; unknown
295
367
+
Arg
TCG
[ENA]
¢þ
>SRA1042155
SRR035091.347302
454 Sequencing (SRP001812)
82
10
-
Arg
TCG
[SRA]
>SRA1045050
SRR035092.400076
454 Sequencing (SRP001813)
297
369
+
Arg
TCG
[SRA]
>SRA1047849
SRR035094.54558
454 Sequencing (SRP001815)
55
127
+
Arg
TCG
[SRA]
>SRA1048076
SRR035094.104130
454 Sequencing (SRP001815)
55
127
+
Arg
TCG
[SRA]
Identical group No.711184 (2 seq.)
>WENV170613245
FUWD012791703
[FUWD] metagenome; unknown
378
304
-
Arg
TCG
[ENA]
¢þ
>SRA1040473
SRR035091.103098
454 Sequencing (SRP001812)
41
115
+
Arg
TCG
[SRA]
Identical group No.711437 (3 seq.)
>WENV170623094
FUWD013136162
[FUWD] metagenome; unknown
166
95
-
Arg
TCG
[ENA]
¢þ
>WENV170631333
FUWD013349008
[FUWD] metagenome; unknown
166
95
-
Arg
TCG
[ENA]
¢þ
>SRA1040399
SRR035091.91032
454 Sequencing (SRP001812)
137
66
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK