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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TCT
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151728 (1 seq.)
>SRA1041689
SRR035091.279239
454 Sequencing (SRP001812)
159
81
-
Arg
TCT
[SRA]
Identical group No.154171 (1 seq.)
>SRA1040574
SRR035091.117592
454 Sequencing (SRP001812)
319
243
-
Arg
TCT
[SRA]
Identical group No.167901 (1 seq.)
>SRA1040038
SRR035091.23539
454 Sequencing (SRP001812)
19
95
+
Arg
TCT
[SRA]
Identical group No.167903 (1 seq.)
>SRA1040227
SRR035091.63197
454 Sequencing (SRP001812)
125
201
+
Arg
TCT
[SRA]
Identical group No.167905 (1 seq.)
>SRA1040275
SRR035091.71052
454 Sequencing (SRP001812)
262
186
-
Arg
TCT
[SRA]
Identical group No.242996 (1 seq.)
>SRA1040041
SRR035091.23978
454 Sequencing (SRP001812)
279
203
-
Arg
TCT
[SRA]
Identical group No.243012 (1 seq.)
>SRA1040311
SRR035091.76210
454 Sequencing (SRP001812)
476
402
-
Arg
TCT
[SRA]
Identical group No.243039 (1 seq.)
>SRA1040682
SRR035091.132282
454 Sequencing (SRP001812)
105
181
+
Arg
TCT
[SRA]
Identical group No.243049 (1 seq.)
>SRA1040785
SRR035091.149954
454 Sequencing (SRP001812)
19
93
+
Arg
TCT
[SRA]
Identical group No.243062 (1 seq.)
>SRA1041051
SRR035091.187921
454 Sequencing (SRP001812)
317
241
-
Arg
TCT
[SRA]
Identical group No.243067 (1 seq.)
>SRA1041126
SRR035091.201203
454 Sequencing (SRP001812)
296
221
-
Arg
TCT
[SRA]
Identical group No.243069 (1 seq.)
>SRA1041208
SRR035091.213850
454 Sequencing (SRP001812)
390
466
+
Arg
TCT
[SRA]
Identical group No.243112 (1 seq.)
>SRA1041910
SRR035091.314799
454 Sequencing (SRP001812)
360
284
-
Arg
TCT
[SRA]
Identical group No.243124 (1 seq.)
>SRA1042067
SRR035091.333378
454 Sequencing (SRP001812)
197
121
-
Arg
TCT
[SRA]
Identical group No.243129 (1 seq.)
>SRA1042177
SRR035091.350255
454 Sequencing (SRP001812)
299
375
+
Arg
TCT
[SRA]
Identical group No.243160 (1 seq.)
>SRA1042816
SRR035091.450448
454 Sequencing (SRP001812)
288
212
-
Arg
TCT
[SRA]
Identical group No.355321 (1 seq.)
>SRA1040060
SRR035091.29843
454 Sequencing (SRP001812)
316
241
-
Arg
TCT
[SRA]
Identical group No.355331 (1 seq.)
>SRA1040152
SRR035091.48968
454 Sequencing (SRP001812)
291
364
+
Arg
TCT
[SRA]
Identical group No.355361 (1 seq.)
>SRA1040535
SRR035091.110747
454 Sequencing (SRP001812)
382
457
+
Arg
TCT
[SRA]
Identical group No.355411 (1 seq.)
>SRA1041169
SRR035091.207629
454 Sequencing (SRP001812)
106
31
-
Arg
TCT
[SRA]
Identical group No.355446 (1 seq.)
>SRA1041785
SRR035091.293884
454 Sequencing (SRP001812)
164
239
+
Arg
TCT
[SRA]
Identical group No.355501 (1 seq.)
>SRA1042578
SRR035091.411121
454 Sequencing (SRP001812)
143
218
+
Arg
TCT
[SRA]
Identical group No.355516 (1 seq.)
>SRA1042757
SRR035091.441758
454 Sequencing (SRP001812)
211
286
+
Arg
TCT
[SRA]
Identical group No.448030 (1 seq.)
>SRA1040172
SRR035091.52963
454 Sequencing (SRP001812)
233
159
-
Arg
TCT
[SRA]
Identical group No.448042 (1 seq.)
>SRA1040367
SRR035091.85284
454 Sequencing (SRP001812)
32
106
+
Arg
TCT
[SRA]
Identical group No.448054 (1 seq.)
>SRA1040483
SRR035091.104098
454 Sequencing (SRP001812)
94
166
+
Arg
TCT
[SRA]
Identical group No.448076 (1 seq.)
>SRA1040681
SRR035091.132136
454 Sequencing (SRP001812)
167
95
-
Arg
TCT
[SRA]
Identical group No.448179 (1 seq.)
>SRA1042319
SRR035091.372193
454 Sequencing (SRP001812)
237
165
-
Arg
TCT
[SRA]
Identical group No.448196 (1 seq.)
>SRA1042558
SRR035091.408917
454 Sequencing (SRP001812)
142
216
+
Arg
TCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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