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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TGA
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.26128 (1 seq.)
>SRA1041914
SRR035091.315221
454 Sequencing (SRP001812)
211
121
-
Ser
TGA
[SRA]
Identical group No.26129 (1 seq.)
>SRA1042264
SRR035091.364364
454 Sequencing (SRP001812)
266
356
+
Ser
TGA
[SRA]
Identical group No.26130 (1 seq.)
>SRA1042507
SRR035091.399880
454 Sequencing (SRP001812)
208
298
+
Ser
TGA
[SRA]
Identical group No.39704 (1 seq.)
>SRA1040381
SRR035091.87494
454 Sequencing (SRP001812)
113
200
+
Ser
TGA
[SRA]
Identical group No.39707 (1 seq.)
>SRA1040834
SRR035091.157883
454 Sequencing (SRP001812)
291
204
-
Ser
TGA
[SRA]
Identical group No.39709 (2 seq.)
>SRA1040924
SRR035091.169742
454 Sequencing (SRP001812)
278
189
-
Ser
TGA
[SRA]
>SRA1042739
SRR035091.438356
454 Sequencing (SRP001812)
107
196
+
Ser
TGA
[SRA]
Identical group No.39710 (2 seq.)
>SRA1040997
SRR035091.179716
454 Sequencing (SRP001812)
411
500
+
Ser
TGA
[SRA]
>SRA1042054
SRR035091.332861
454 Sequencing (SRP001812)
411
500
+
Ser
TGA
[SRA]
Identical group No.39713 (1 seq.)
>SRA1041319
SRR035091.227762
454 Sequencing (SRP001812)
277
366
+
Ser
TGA
[SRA]
Identical group No.39717 (1 seq.)
>SRA1041833
SRR035091.302958
454 Sequencing (SRP001812)
216
127
-
Ser
TGA
[SRA]
Identical group No.39718 (1 seq.)
>SRA1041912
SRR035091.315125
454 Sequencing (SRP001812)
133
221
+
Ser
TGA
[SRA]
Identical group No.39719 (1 seq.)
>SRA1041944
SRR035091.317375
454 Sequencing (SRP001812)
138
49
-
Ser
TGA
[SRA]
Identical group No.39723 (1 seq.)
>SRA1042386
SRR035091.380381
454 Sequencing (SRP001812)
253
342
+
Ser
TGA
[SRA]
Identical group No.39724 (1 seq.)
>SRA1042449
SRR035091.387910
454 Sequencing (SRP001812)
195
284
+
Ser
TGA
[SRA]
Identical group No.39729 (1 seq.)
>SRA1042688
SRR035091.429987
454 Sequencing (SRP001812)
155
242
+
Ser
TGA
[SRA]
Identical group No.39730 (1 seq.)
>SRA1042703
SRR035091.432868
454 Sequencing (SRP001812)
33
122
+
Ser
TGA
[SRA]
Identical group No.39732 (1 seq.)
>SRA1042755
SRR035091.441458
454 Sequencing (SRP001812)
337
248
-
Ser
TGA
[SRA]
Identical group No.52461 (1 seq.)
>SRA1041469
SRR035091.246144
454 Sequencing (SRP001812)
220
132
-
Ser
TGA
[SRA]
Identical group No.66476 (1 seq.)
>SRA1040032
SRR035091.22169
454 Sequencing (SRP001812)
163
250
+
Ser
TGA
[SRA]
Identical group No.66485 (1 seq.)
>SRA1041115
SRR035091.198846
454 Sequencing (SRP001812)
456
369
-
Ser
TGA
[SRA]
Identical group No.66489 (2 seq.)
>SRA1041290
SRR035091.224168
454 Sequencing (SRP001812)
245
332
+
Ser
TGA
[SRA]
>SRA1042796
SRR035091.448739
454 Sequencing (SRP001812)
248
335
+
Ser
TGA
[SRA]
Identical group No.66490 (1 seq.)
>SRA1041442
SRR035091.242774
454 Sequencing (SRP001812)
328
243
-
Ser
TGA
[SRA]
Identical group No.66495 (1 seq.)
>SRA1041821
SRR035091.299656
454 Sequencing (SRP001812)
245
332
+
Ser
TGA
[SRA]
Identical group No.66500 (1 seq.)
>SRA1042591
SRR035091.413159
454 Sequencing (SRP001812)
274
189
-
Ser
TGA
[SRA]
Identical group No.89584 (1 seq.)
>SRA1040442
SRR035091.97887
454 Sequencing (SRP001812)
22
107
+
Ser
TGA
[SRA]
Identical group No.89590 (1 seq.)
>SRA1040761
SRR035091.144051
454 Sequencing (SRP001812)
357
443
+
Ser
TGA
[SRA]
Identical group No.89621 (1 seq.)
>SRA1040716
SRR035091.135989
454 Sequencing (SRP001812)
345
430
+
Ser
TGA
[SRA]
Identical group No.110772 (1 seq.)
>SRA1040713
SRR035091.135741
454 Sequencing (SRP001812)
111
28
-
Ser
TGA
[SRA]
Identical group No.110775 (1 seq.)
>SRA1041071
SRR035091.191695
454 Sequencing (SRP001812)
188
103
-
Ser
TGA
[SRA]
Identical group No.110784 (1 seq.)
>SRA1042514
SRR035091.400614
454 Sequencing (SRP001812)
492
407
-
Ser
TGA
[SRA]
Identical group No.132299 (1 seq.)
>SRA1041420
SRR035091.239967
454 Sequencing (SRP001812)
155
238
+
Ser
TGA
[SRA]
Identical group No.145021 (1 seq.)
>SRA1041763
SRR035091.289877
454 Sequencing (SRP001812)
197
277
+
Ser
TGA
[SRA]
Identical group No.145022 (1 seq.)
>SRA1042094
SRR035091.337422
454 Sequencing (SRP001812)
102
182
+
Ser
TGA
[SRA]
Identical group No.145028 (1 seq.)
>SRA1041194
SRR035091.211845
454 Sequencing (SRP001812)
215
295
+
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK