This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TGA
HIT:
58 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.39792 (1 seq.)
>SRA1041914
SRR035091.315221
454 Sequencing (SRP001812)
211
121
-
Ser
TGA
[SRA]
Identical group No.39793 (1 seq.)
>SRA1042264
SRR035091.364364
454 Sequencing (SRP001812)
266
356
+
Ser
TGA
[SRA]
Identical group No.39794 (1 seq.)
>SRA1042507
SRR035091.399880
454 Sequencing (SRP001812)
208
298
+
Ser
TGA
[SRA]
Identical group No.57910 (3 seq.)
>WENV170604964
FUWD010438347
[FUWD] metagenome; unknown
324
411
+
Ser
TGA
[ENA]
¢þ
>SRA1040679
SRR035091.131463
454 Sequencing (SRP001812)
478
391
-
Ser
TGA
[SRA]
>SRA1050277
SRR035095.228247
454 Sequencing (SRP001816)
16
105
+
Ser
TGA
[SRA]
Identical group No.57911 (3 seq.)
>WENV170604992
FUWD010440309
[FUWD] metagenome; unknown
760
671
-
Ser
TGA
[ENA]
¢þ
>SRA1040084
SRR035091.35589
454 Sequencing (SRP001812)
45
134
+
Ser
TGA
[SRA]
>SRA1044287
SRR035092.253042
454 Sequencing (SRP001813)
395
306
-
Ser
TGA
[SRA]
Identical group No.57984 (2 seq.)
>WENV170612540
FUWD012631744
[FUWD] metagenome; unknown
292
205
-
Ser
TGA
[ENA]
¢þ
>SRA1042487
SRR035091.396104
454 Sequencing (SRP001812)
292
205
-
Ser
TGA
[SRA]
Identical group No.58038 (4 seq.)
>WENV170620664
FUWD013036333
[FUWD] metagenome; unknown
5
92
+
Ser
TGA
[ENA]
¢þ
>WENV170628812
FUWD013253612
[FUWD] metagenome; unknown
5
92
+
Ser
TGA
[ENA]
¢þ
>SRA1040288
SRR035091.72603
454 Sequencing (SRP001812)
73
160
+
Ser
TGA
[SRA]
>SRA1041560
SRR035091.260884
454 Sequencing (SRP001812)
5
92
+
Ser
TGA
[SRA]
Identical group No.58056 (3 seq.)
>WENV170623313
FUWD013145543
[FUWD] metagenome; unknown
101
12
-
Ser
TGA
[ENA]
¢þ
>WENV170631576
FUWD013357506
[FUWD] metagenome; unknown
101
12
-
Ser
TGA
[ENA]
¢þ
>SRA1042783
SRR035091.446573
454 Sequencing (SRP001812)
137
48
-
Ser
TGA
[SRA]
Identical group No.58058 (4 seq.)
>WENV170623333
FUWD013145897
[FUWD] metagenome; unknown
809
720
-
Ser
TGA
[ENA]
¢þ
>WENV170631596
FUWD013357844
[FUWD] metagenome; unknown
809
720
-
Ser
TGA
[ENA]
¢þ
>SRA1040384
SRR035091.87869
454 Sequencing (SRP001812)
115
204
+
Ser
TGA
[SRA]
>SRA1041615
SRR035091.270115
454 Sequencing (SRP001812)
455
366
-
Ser
TGA
[SRA]
Identical group No.58060 (3 seq.)
>WENV170623489
FUWD013153184
[FUWD] metagenome; unknown
101
188
+
Ser
TGA
[ENA]
¢þ
>WENV170631753
FUWD013364057
[FUWD] metagenome; unknown
101
188
+
Ser
TGA
[ENA]
¢þ
>SRA1040350
SRR035091.83082
454 Sequencing (SRP001812)
443
356
-
Ser
TGA
[SRA]
Identical group No.61390 (1 seq.)
>SRA1040306
SRR035091.75614
454 Sequencing (SRP001812)
13
102
+
Ser
TGA
[SRA]
Identical group No.61391 (1 seq.)
>SRA1040381
SRR035091.87494
454 Sequencing (SRP001812)
113
200
+
Ser
TGA
[SRA]
Identical group No.61393 (1 seq.)
>SRA1040667
SRR035091.130342
454 Sequencing (SRP001812)
226
315
+
Ser
TGA
[SRA]
Identical group No.61395 (1 seq.)
>SRA1040834
SRR035091.157883
454 Sequencing (SRP001812)
291
204
-
Ser
TGA
[SRA]
Identical group No.61397 (1 seq.)
>SRA1040924
SRR035091.169742
454 Sequencing (SRP001812)
278
189
-
Ser
TGA
[SRA]
Identical group No.61398 (2 seq.)
>SRA1040997
SRR035091.179716
454 Sequencing (SRP001812)
411
500
+
Ser
TGA
[SRA]
>SRA1042054
SRR035091.332861
454 Sequencing (SRP001812)
411
500
+
Ser
TGA
[SRA]
Identical group No.61403 (1 seq.)
>SRA1041319
SRR035091.227762
454 Sequencing (SRP001812)
277
366
+
Ser
TGA
[SRA]
Identical group No.61408 (1 seq.)
>SRA1041833
SRR035091.302958
454 Sequencing (SRP001812)
216
127
-
Ser
TGA
[SRA]
Identical group No.61409 (1 seq.)
>SRA1041912
SRR035091.315125
454 Sequencing (SRP001812)
133
221
+
Ser
TGA
[SRA]
Identical group No.61410 (1 seq.)
>SRA1041944
SRR035091.317375
454 Sequencing (SRP001812)
138
49
-
Ser
TGA
[SRA]
Identical group No.61413 (1 seq.)
>SRA1042338
SRR035091.374466
454 Sequencing (SRP001812)
205
294
+
Ser
TGA
[SRA]
Identical group No.61414 (1 seq.)
>SRA1042386
SRR035091.380381
454 Sequencing (SRP001812)
253
342
+
Ser
TGA
[SRA]
Identical group No.61415 (1 seq.)
>SRA1042449
SRR035091.387910
454 Sequencing (SRP001812)
195
284
+
Ser
TGA
[SRA]
Identical group No.61421 (1 seq.)
>SRA1042688
SRR035091.429987
454 Sequencing (SRP001812)
155
242
+
Ser
TGA
[SRA]
Identical group No.61422 (1 seq.)
>SRA1042703
SRR035091.432868
454 Sequencing (SRP001812)
33
122
+
Ser
TGA
[SRA]
Identical group No.61424 (1 seq.)
>SRA1042739
SRR035091.438356
454 Sequencing (SRP001812)
107
196
+
Ser
TGA
[SRA]
Identical group No.61425 (1 seq.)
>SRA1042755
SRR035091.441458
454 Sequencing (SRP001812)
337
248
-
Ser
TGA
[SRA]
Identical group No.61430 (1 seq.)
>SRA1041715
SRR035091.281917
454 Sequencing (SRP001812)
107
194
+
Ser
TGA
[SRA]
Identical group No.81159 (1 seq.)
>SRA1041469
SRR035091.246144
454 Sequencing (SRP001812)
220
132
-
Ser
TGA
[SRA]
Identical group No.98443 (2 seq.)
>WENV170602347
FUWD010229808
[FUWD] metagenome; unknown
96
9
-
Ser
TGA
[ENA]
¢þ
>SRA1041511
SRR035091.253284
454 Sequencing (SRP001812)
326
414
+
Ser
TGA
[SRA]
Identical group No.98503 (3 seq.)
>WENV170609319
FUWD011371818
[FUWD] metagenome; unknown
90
3
-
Ser
TGA
[ENA]
¢þ
>SRA1041586
SRR035091.265675
454 Sequencing (SRP001812)
199
286
+
Ser
TGA
[SRA]
>SRA1042777
SRR035091.445082
454 Sequencing (SRP001812)
296
209
-
Ser
TGA
[SRA]
Identical group No.98545 (4 seq.)
>WENV170612395
FUWD012599139
[FUWD] metagenome; unknown
59
146
+
Ser
TGA
[ENA]
¢þ
>SRA1039981
SRR035091.9447
454 Sequencing (SRP001812)
59
146
+
Ser
TGA
[SRA]
>SRA1040116
SRR035091.41550
454 Sequencing (SRP001812)
101
14
-
Ser
TGA
[SRA]
>SRA1045123
SRR035092.416205
454 Sequencing (SRP001813)
509
422
-
Ser
TGA
[SRA]
Identical group No.101952 (1 seq.)
>SRA1040032
SRR035091.22169
454 Sequencing (SRP001812)
163
250
+
Ser
TGA
[SRA]
Identical group No.101961 (1 seq.)
>SRA1041115
SRR035091.198846
454 Sequencing (SRP001812)
456
369
-
Ser
TGA
[SRA]
Identical group No.101965 (2 seq.)
>SRA1041290
SRR035091.224168
454 Sequencing (SRP001812)
245
332
+
Ser
TGA
[SRA]
>SRA1042796
SRR035091.448739
454 Sequencing (SRP001812)
248
335
+
Ser
TGA
[SRA]
Identical group No.101966 (1 seq.)
>SRA1041442
SRR035091.242774
454 Sequencing (SRP001812)
328
243
-
Ser
TGA
[SRA]
Identical group No.101971 (1 seq.)
>SRA1041821
SRR035091.299656
454 Sequencing (SRP001812)
245
332
+
Ser
TGA
[SRA]
Identical group No.101976 (1 seq.)
>SRA1042591
SRR035091.413159
454 Sequencing (SRP001812)
274
189
-
Ser
TGA
[SRA]
Identical group No.136936 (1 seq.)
>SRA1040442
SRR035091.97887
454 Sequencing (SRP001812)
22
107
+
Ser
TGA
[SRA]
Identical group No.136943 (1 seq.)
>SRA1040761
SRR035091.144051
454 Sequencing (SRP001812)
357
443
+
Ser
TGA
[SRA]
Identical group No.136984 (1 seq.)
>SRA1042943
SRR035091.471115
454 Sequencing (SRP001812)
115
29
-
Ser
TGA
[SRA]
Identical group No.136985 (1 seq.)
>SRA1040716
SRR035091.135989
454 Sequencing (SRP001812)
345
430
+
Ser
TGA
[SRA]
Identical group No.153842 (3 seq.)
>WENV170607829
FUWD010859404
[FUWD] metagenome; unknown
88
171
+
Ser
TGA
[ENA]
¢þ
>SRA1025607
SRR035085.48757
454 Sequencing (SRP001806)
77
160
+
Ser
TGA
[SRA]
>SRA1040563
SRR035091.115634
454 Sequencing (SRP001812)
151
234
+
Ser
TGA
[SRA]
Identical group No.165686 (2 seq.)
>WENV170607888
FUWD010867970
[FUWD] metagenome; unknown
359
276
-
Ser
TGA
[ENA]
¢þ
>SRA1041322
SRR035091.228009
454 Sequencing (SRP001812)
124
207
+
Ser
TGA
[SRA]
Identical group No.165815 (10 seq.)
>WENV170624310
FUWD013179602
[FUWD] metagenome; unknown
2549
2634
+
Ser
TGA
[ENA]
¢þ
>WENV170632597
FUWD013384921
[FUWD] metagenome; unknown
2549
2634
+
Ser
TGA
[ENA]
¢þ
>SRA1018590
SRR035082.316718
454 Sequencing (SRP001803)
153
68
-
Ser
TGA
[SRA]
>SRA1040960
SRR035091.175064
454 Sequencing (SRP001812)
241
326
+
Ser
TGA
[SRA]
>SRA1041428
SRR035091.240508
454 Sequencing (SRP001812)
384
299
-
Ser
TGA
[SRA]
>SRA1042176
SRR035091.350118
454 Sequencing (SRP001812)
96
11
-
Ser
TGA
[SRA]
>SRA1042296
SRR035091.369113
454 Sequencing (SRP001812)
123
38
-
Ser
TGA
[SRA]
>SRA1043320
SRR035092.95911
454 Sequencing (SRP001813)
280
195
-
Ser
TGA
[SRA]
>SRA1048497
SRR035094.187192
454 Sequencing (SRP001815)
281
196
-
Ser
TGA
[SRA]
>SRA1048528
SRR035094.193742
454 Sequencing (SRP001815)
105
20
-
Ser
TGA
[SRA]
Identical group No.169163 (1 seq.)
>SRA1040713
SRR035091.135741
454 Sequencing (SRP001812)
111
28
-
Ser
TGA
[SRA]
Identical group No.169166 (1 seq.)
>SRA1041071
SRR035091.191695
454 Sequencing (SRP001812)
188
103
-
Ser
TGA
[SRA]
Identical group No.169177 (1 seq.)
>SRA1042514
SRR035091.400614
454 Sequencing (SRP001812)
492
407
-
Ser
TGA
[SRA]
Identical group No.203011 (1 seq.)
>SRA1041420
SRR035091.239967
454 Sequencing (SRP001812)
155
238
+
Ser
TGA
[SRA]
Identical group No.218074 (13 seq.)
>WENV170627211
FUWD013232075
[FUWD] metagenome; unknown
6788
6706
-
Ser
TGA
[ENA]
¢þ
>WENV170632828
FUWD013387521
[FUWD] metagenome; unknown
6788
6706
-
Ser
TGA
[ENA]
¢þ
>SRA1017799
SRR035082.197761
454 Sequencing (SRP001803)
311
229
-
Ser
TGA
[SRA]
>SRA1032424
SRR035088.1266
454 Sequencing (SRP001809)
85
167
+
Ser
TGA
[SRA]
>SRA1034447
SRR035089.98275
454 Sequencing (SRP001810)
126
208
+
Ser
TGA
[SRA]
>SRA1035986
SRR035089.421345
454 Sequencing (SRP001810)
197
115
-
Ser
TGA
[SRA]
>SRA1040967
SRR035091.175459
454 Sequencing (SRP001812)
142
224
+
Ser
TGA
[SRA]
>SRA1041636
SRR035091.271809
454 Sequencing (SRP001812)
19
101
+
Ser
TGA
[SRA]
>SRA1041864
SRR035091.306505
454 Sequencing (SRP001812)
47
129
+
Ser
TGA
[SRA]
>SRA1042503
SRR035091.399118
454 Sequencing (SRP001812)
117
199
+
Ser
TGA
[SRA]
>SRA1043403
SRR035092.109105
454 Sequencing (SRP001813)
112
194
+
Ser
TGA
[SRA]
>SRA1050205
SRR035095.211988
454 Sequencing (SRP001816)
130
48
-
Ser
TGA
[SRA]
>SRA1050316
SRR035095.236031
454 Sequencing (SRP001816)
213
131
-
Ser
TGA
[SRA]
Identical group No.222874 (2 seq.)
>WENV170613481
FUWD012808094
[FUWD] metagenome; unknown
510
426
-
Ser
TGA
[ENA]
¢þ
>SRA1042788
SRR035091.447720
454 Sequencing (SRP001812)
273
357
+
Ser
TGA
[SRA]
Identical group No.224220 (1 seq.)
>SRA1041763
SRR035091.289877
454 Sequencing (SRP001812)
197
277
+
Ser
TGA
[SRA]
Identical group No.224221 (1 seq.)
>SRA1042094
SRR035091.337422
454 Sequencing (SRP001812)
102
182
+
Ser
TGA
[SRA]
Identical group No.224223 (1 seq.)
>SRA1042285
SRR035091.367668
454 Sequencing (SRP001812)
331
249
-
Ser
TGA
[SRA]
Identical group No.224230 (1 seq.)
>SRA1041194
SRR035091.211845
454 Sequencing (SRP001812)
215
295
+
Ser
TGA
[SRA]
Identical group No.229258 (5 seq.)
>WENV170608107
FUWD010894070
[FUWD] metagenome; unknown
18
99
+
Ser
TGA
[ENA]
¢þ
>SRA1031815
SRR035087.494012
454 Sequencing (SRP001808)
227
148
-
Ser
TGA
[SRA]
>SRA1040797
SRR035091.151272
454 Sequencing (SRP001812)
19
98
+
Ser
TGA
[SRA]
>SRA1049439
SRR035095.78099
454 Sequencing (SRP001816)
328
247
-
Ser
TGA
[SRA]
>SRA1049591
SRR035095.100149
454 Sequencing (SRP001816)
331
250
-
Ser
TGA
[SRA]
Identical group No.230475 (3 seq.)
>WENV170612438
FUWD012609685
[FUWD] metagenome; unknown
141
222
+
Ser
TGA
[ENA]
¢þ
>SRA1040627
SRR035091.124243
454 Sequencing (SRP001812)
183
264
+
Ser
TGA
[SRA]
>SRA1041393
SRR035091.236785
454 Sequencing (SRP001812)
152
233
+
Ser
TGA
[SRA]
Identical group No.357988 (2 seq.)
>WENV170608095
FUWD010892745
[FUWD] metagenome; unknown
559
486
-
Ser
TGA
[ENA]
¢þ
>SRA1040204
SRR035091.58142
454 Sequencing (SRP001812)
306
233
-
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK