This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TGG
HIT:
35 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167902 (1 seq.)
>SRA1040205
SRR035091.58203
454 Sequencing (SRP001812)
142
218
+
Pro
TGG
[SRA]
Identical group No.167907 (1 seq.)
>SRA1040303
SRR035091.74706
454 Sequencing (SRP001812)
217
142
-
Pro
TGG
[SRA]
Identical group No.167926 (1 seq.)
>SRA1041000
SRR035091.180374
454 Sequencing (SRP001812)
28
105
+
Pro
TGG
[SRA]
Identical group No.167928 (1 seq.)
>SRA1041079
SRR035091.193557
454 Sequencing (SRP001812)
267
190
-
Pro
TGG
[SRA]
Identical group No.167940 (1 seq.)
>SRA1041470
SRR035091.246649
454 Sequencing (SRP001812)
64
141
+
Pro
TGG
[SRA]
Identical group No.167947 (1 seq.)
>SRA1041909
SRR035091.314799
454 Sequencing (SRP001812)
439
364
-
Pro
TGG
[SRA]
Identical group No.167970 (1 seq.)
>SRA1042939
SRR035091.470490
454 Sequencing (SRP001812)
152
76
-
Pro
TGG
[SRA]
Identical group No.242999 (1 seq.)
>SRA1040088
SRR035091.36743
454 Sequencing (SRP001812)
185
109
-
Pro
TGG
[SRA]
Identical group No.243004 (1 seq.)
>SRA1040212
SRR035091.59883
454 Sequencing (SRP001812)
279
355
+
Pro
TGG
[SRA]
Identical group No.243029 (1 seq.)
>SRA1040541
SRR035091.112693
454 Sequencing (SRP001812)
467
391
-
Pro
TGG
[SRA]
Identical group No.243043 (1 seq.)
>SRA1040702
SRR035091.134934
454 Sequencing (SRP001812)
357
432
+
Pro
TGG
[SRA]
Identical group No.243070 (1 seq.)
>SRA1041223
SRR035091.216116
454 Sequencing (SRP001812)
358
282
-
Pro
TGG
[SRA]
Identical group No.243099 (1 seq.)
>SRA1041673
SRR035091.277336
454 Sequencing (SRP001812)
47
123
+
Pro
TGG
[SRA]
Identical group No.243104 (1 seq.)
>SRA1041734
SRR035091.284275
454 Sequencing (SRP001812)
360
284
-
Pro
TGG
[SRA]
Identical group No.243121 (1 seq.)
>SRA1042008
SRR035091.327268
454 Sequencing (SRP001812)
235
159
-
Pro
TGG
[SRA]
Identical group No.243139 (1 seq.)
>SRA1042472
SRR035091.393332
454 Sequencing (SRP001812)
13
86
+
Pro
TGG
[SRA]
Identical group No.243146 (1 seq.)
>SRA1042575
SRR035091.410778
454 Sequencing (SRP001812)
276
352
+
Pro
TGG
[SRA]
Identical group No.243150 (1 seq.)
>SRA1042643
SRR035091.422548
454 Sequencing (SRP001812)
196
272
+
Pro
TGG
[SRA]
Identical group No.243161 (1 seq.)
>SRA1042839
SRR035091.453557
454 Sequencing (SRP001812)
227
301
+
Pro
TGG
[SRA]
Identical group No.355317 (1 seq.)
>SRA1040012
SRR035091.17895
454 Sequencing (SRP001812)
20
94
+
Pro
TGG
[SRA]
Identical group No.355336 (3 seq.)
>SRA1040170
SRR035091.52252
454 Sequencing (SRP001812)
406
481
+
Pro
TGG
[SRA]
>SRA1041983
SRR035091.323065
454 Sequencing (SRP001812)
294
369
+
Pro
TGG
[SRA]
>SRA1042846
SRR035091.454813
454 Sequencing (SRP001812)
120
195
+
Pro
TGG
[SRA]
Identical group No.355370 (1 seq.)
>SRA1040656
SRR035091.128083
454 Sequencing (SRP001812)
58
132
+
Pro
TGG
[SRA]
Identical group No.355379 (1 seq.)
>SRA1040756
SRR035091.143777
454 Sequencing (SRP001812)
325
253
-
Pro
TGG
[SRA]
Identical group No.355396 (1 seq.)
>SRA1040923
SRR035091.169713
454 Sequencing (SRP001812)
262
337
+
Pro
TGG
[SRA]
Identical group No.355464 (1 seq.)
>SRA1042111
SRR035091.339875
454 Sequencing (SRP001812)
518
443
-
Pro
TGG
[SRA]
Identical group No.355492 (1 seq.)
>SRA1042482
SRR035091.395587
454 Sequencing (SRP001812)
176
249
+
Pro
TGG
[SRA]
Identical group No.355504 (1 seq.)
>SRA1042621
SRR035091.417627
454 Sequencing (SRP001812)
217
291
+
Pro
TGG
[SRA]
Identical group No.355520 (1 seq.)
>SRA1042814
SRR035091.450321
454 Sequencing (SRP001812)
126
51
-
Pro
TGG
[SRA]
Identical group No.355522 (1 seq.)
>SRA1042859
SRR035091.457134
454 Sequencing (SRP001812)
364
289
-
Pro
TGG
[SRA]
Identical group No.448074 (1 seq.)
>SRA1040668
SRR035091.130403
454 Sequencing (SRP001812)
259
330
+
Pro
TGG
[SRA]
Identical group No.448098 (1 seq.)
>SRA1041018
SRR035091.182492
454 Sequencing (SRP001812)
304
375
+
Pro
TGG
[SRA]
Identical group No.448169 (1 seq.)
>SRA1042129
SRR035091.343759
454 Sequencing (SRP001812)
30
102
+
Pro
TGG
[SRA]
Identical group No.448199 (1 seq.)
>SRA1042601
SRR035091.414567
454 Sequencing (SRP001812)
51
122
+
Pro
TGG
[SRA]
Identical group No.502997 (1 seq.)
>SRA1040819
SRR035091.154010
454 Sequencing (SRP001812)
59
132
+
Pro
TGG
[SRA]
Identical group No.503014 (1 seq.)
>SRA1041209
SRR035091.213891
454 Sequencing (SRP001812)
105
175
+
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK