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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TGT
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.110769 (1 seq.)
>SRA1040655
SRR035091.128071
454 Sequencing (SRP001812)
20
102
+
Thr
TGT
[SRA]
Identical group No.167958 (1 seq.)
>SRA1042426
SRR035091.385352
454 Sequencing (SRP001812)
362
439
+
Thr
TGT
[SRA]
Identical group No.243014 (1 seq.)
>SRA1040319
SRR035091.77805
454 Sequencing (SRP001812)
204
280
+
Thr
TGT
[SRA]
Identical group No.243077 (1 seq.)
>SRA1041346
SRR035091.230173
454 Sequencing (SRP001812)
136
60
-
Thr
TGT
[SRA]
Identical group No.243116 (1 seq.)
>SRA1041962
SRR035091.320108
454 Sequencing (SRP001812)
300
226
-
Thr
TGT
[SRA]
Identical group No.243117 (1 seq.)
>SRA1041978
SRR035091.322068
454 Sequencing (SRP001812)
30
104
+
Thr
TGT
[SRA]
Identical group No.355346 (1 seq.)
>SRA1040320
SRR035091.77895
454 Sequencing (SRP001812)
94
19
-
Thr
TGT
[SRA]
Identical group No.355374 (1 seq.)
>SRA1040693
SRR035091.134028
454 Sequencing (SRP001812)
327
401
+
Thr
TGT
[SRA]
Identical group No.355388 (1 seq.)
>SRA1040847
SRR035091.159020
454 Sequencing (SRP001812)
116
191
+
Thr
TGT
[SRA]
Identical group No.355401 (4 seq.)
>SRA1041004
SRR035091.180625
454 Sequencing (SRP001812)
334
259
-
Thr
TGT
[SRA]
>SRA1041817
SRR035091.298791
454 Sequencing (SRP001812)
331
256
-
Thr
TGT
[SRA]
>SRA1042536
SRR035091.404396
454 Sequencing (SRP001812)
334
259
-
Thr
TGT
[SRA]
>SRA1042710
SRR035091.434040
454 Sequencing (SRP001812)
335
260
-
Thr
TGT
[SRA]
Identical group No.355405 (1 seq.)
>SRA1041077
SRR035091.193079
454 Sequencing (SRP001812)
261
333
+
Thr
TGT
[SRA]
Identical group No.355414 (1 seq.)
>SRA1041180
SRR035091.209345
454 Sequencing (SRP001812)
257
329
+
Thr
TGT
[SRA]
Identical group No.355444 (1 seq.)
>SRA1041772
SRR035091.291389
454 Sequencing (SRP001812)
414
342
-
Thr
TGT
[SRA]
Identical group No.355452 (1 seq.)
>SRA1041897
SRR035091.313087
454 Sequencing (SRP001812)
68
143
+
Thr
TGT
[SRA]
Identical group No.355461 (1 seq.)
>SRA1042080
SRR035091.335255
454 Sequencing (SRP001812)
336
408
+
Thr
TGT
[SRA]
Identical group No.355472 (1 seq.)
>SRA1042259
SRR035091.363727
454 Sequencing (SRP001812)
28
101
+
Thr
TGT
[SRA]
Identical group No.355475 (1 seq.)
>SRA1042272
SRR035091.365301
454 Sequencing (SRP001812)
285
360
+
Thr
TGT
[SRA]
Identical group No.355502 (1 seq.)
>SRA1042600
SRR035091.414506
454 Sequencing (SRP001812)
178
103
-
Thr
TGT
[SRA]
Identical group No.355517 (1 seq.)
>SRA1042767
SRR035091.444165
454 Sequencing (SRP001812)
92
167
+
Thr
TGT
[SRA]
Identical group No.355525 (1 seq.)
>SRA1042876
SRR035091.460102
454 Sequencing (SRP001812)
111
36
-
Thr
TGT
[SRA]
Identical group No.355527 (1 seq.)
>SRA1042884
SRR035091.461181
454 Sequencing (SRP001812)
180
105
-
Thr
TGT
[SRA]
Identical group No.355528 (1 seq.)
>SRA1042885
SRR035091.461431
454 Sequencing (SRP001812)
192
117
-
Thr
TGT
[SRA]
Identical group No.355541 (1 seq.)
>SRA1041619
SRR035091.270226
454 Sequencing (SRP001812)
204
277
+
Thr
TGT
[SRA]
Identical group No.448037 (1 seq.)
>SRA1040309
SRR035091.76185
454 Sequencing (SRP001812)
116
190
+
Thr
TGT
[SRA]
Identical group No.448066 (1 seq.)
>SRA1040543
SRR035091.112693
454 Sequencing (SRP001812)
314
240
-
Thr
TGT
[SRA]
Identical group No.448068 (1 seq.)
>SRA1040566
SRR035091.116019
454 Sequencing (SRP001812)
122
194
+
Thr
TGT
[SRA]
Identical group No.448133 (1 seq.)
>SRA1041587
SRR035091.265834
454 Sequencing (SRP001812)
331
260
-
Thr
TGT
[SRA]
Identical group No.448135 (1 seq.)
>SRA1041630
SRR035091.270798
454 Sequencing (SRP001812)
20
91
+
Thr
TGT
[SRA]
Identical group No.448150 (1 seq.)
>SRA1041818
SRR035091.299286
454 Sequencing (SRP001812)
460
388
-
Thr
TGT
[SRA]
Identical group No.448173 (1 seq.)
>SRA1042182
SRR035091.350890
454 Sequencing (SRP001812)
76
5
-
Thr
TGT
[SRA]
Identical group No.448177 (1 seq.)
>SRA1042286
SRR035091.367748
454 Sequencing (SRP001812)
306
235
-
Thr
TGT
[SRA]
Identical group No.502975 (1 seq.)
>SRA1040194
SRR035091.56627
454 Sequencing (SRP001812)
155
85
-
Thr
TGT
[SRA]
Identical group No.502979 (1 seq.)
>SRA1040299
SRR035091.74419
454 Sequencing (SRP001812)
160
90
-
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK