This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TGT
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254072 (3 seq.)
>WENV170608091
FUWD010892482
[FUWD] metagenome; unknown
660
735
+
Thr
TGT
[ENA]
¢þ
>SRA1040093
SRR035091.37746
454 Sequencing (SRP001812)
118
193
+
Thr
TGT
[SRA]
>SRA1050292
SRR035095.232516
454 Sequencing (SRP001816)
149
74
-
Thr
TGT
[SRA]
Identical group No.272943 (6 seq.)
>W131193251
ASNW01000001
Unclassified
Parcubacteria bacterium SCGC AB-164-E21 OD1 bacterium SCGC AB-164-E21 [ASNW]
1566
1642
+
Thr
TGT
[ENA]
¡û
>WENV170603256
FUWD010297372
[FUWD] metagenome; unknown
506
582
+
Thr
TGT
[ENA]
¢þ
>SRA1018860
SRR035082.359528
454 Sequencing (SRP001803)
136
60
-
Thr
TGT
[SRA]
>SRA1032221
SRR035087.580580
454 Sequencing (SRP001808)
129
53
-
Thr
TGT
[SRA]
>SRA1036675
SRR035089.579915
454 Sequencing (SRP001810)
185
109
-
Thr
TGT
[SRA]
>SRA1039973
SRR035091.4793
454 Sequencing (SRP001812)
40
116
+
Thr
TGT
[SRA]
Identical group No.300378 (6 seq.)
>WENV170626454
FUWD013222906
[FUWD] metagenome; unknown
262
189
-
Thr
TGT
[ENA]
¢þ
>SRA1023133
SRR035084.14522
454 Sequencing (SRP001805)
241
168
-
Thr
TGT
[SRA]
>SRA1023412
SRR035084.92956
454 Sequencing (SRP001805)
244
171
-
Thr
TGT
[SRA]
>SRA1029631
SRR035087.153828
454 Sequencing (SRP001808)
179
252
+
Thr
TGT
[SRA]
>SRA1040189
SRR035091.55223
454 Sequencing (SRP001812)
132
205
+
Thr
TGT
[SRA]
>SRA1046110
SRR035093.238311
454 Sequencing (SRP001814)
247
174
-
Thr
TGT
[SRA]
Identical group No.358343 (11 seq.)
>W1711423303
MICQ01000049
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
5119
5043
-
Thr
TGT
[ENA]
¡û
>W1711423377
MICT01000068
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
174
250
+
Thr
TGT
[ENA]
¡û
>WENV170612407
FUWD012604807
[FUWD] metagenome; unknown
360
436
+
Thr
TGT
[ENA]
¢þ
>WENV170624040
FUWD013174325
[FUWD] metagenome; unknown
430
506
+
Thr
TGT
[ENA]
¢þ
>WENV170632328
FUWD013380716
[FUWD] metagenome; unknown
430
506
+
Thr
TGT
[ENA]
¢þ
>WENV170635800
JDSH01006110
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
495
419
-
Thr
TGT
[ENA]
¢þ
>WENV170643298
JFJP01052798
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
189
265
+
Thr
TGT
[ENA]
¢þ
>C181029186
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
230671
230747
+
Thr
TGT
-
¡û
>C181029222
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
210507
210583
+
Thr
TGT
-
¡û
>SRA1040282
SRR035091.72290
454 Sequencing (SRP001812)
360
436
+
Thr
TGT
[SRA]
>SRA1041745
SRR035091.286303
454 Sequencing (SRP001812)
85
9
-
Thr
TGT
[SRA]
Identical group No.453344 (15 seq.)
>WENV170620338
FUWD013029773
[FUWD] metagenome; unknown
1170
1095
-
Thr
TGT
[ENA]
¢þ
>WENV170628475
FUWD013247384
[FUWD] metagenome; unknown
8128
8203
+
Thr
TGT
[ENA]
¢þ
>SRA1018695
SRR035082.333812
454 Sequencing (SRP001803)
95
170
+
Thr
TGT
[SRA]
>SRA1026116
SRR035085.146956
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026181
SRR035085.159699
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026271
SRR035085.176195
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026351
SRR035085.191262
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026485
SRR035085.214179
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026525
SRR035085.221563
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026554
SRR035085.226896
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026784
SRR035085.290569
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1026792
SRR035085.292436
454 Sequencing (SRP001806)
101
26
-
Thr
TGT
[SRA]
>SRA1041954
SRR035091.318031
454 Sequencing (SRP001812)
109
184
+
Thr
TGT
[SRA]
>SRA1044576
SRR035092.304327
454 Sequencing (SRP001813)
105
180
+
Thr
TGT
[SRA]
>SRA1050059
SRR035095.185231
454 Sequencing (SRP001816)
287
362
+
Thr
TGT
[SRA]
Identical group No.453366 (7 seq.)
>WENV170626225
FUWD013217082
[FUWD] metagenome; unknown
1046
1121
+
Thr
TGT
[ENA]
¢þ
>WENV170626226
FUWD013217083
[FUWD] metagenome; unknown
88
163
+
Thr
TGT
[ENA]
¢þ
>SRA1017995
SRR035082.226084
454 Sequencing (SRP001803)
15
90
+
Thr
TGT
[SRA]
>SRA1026237
SRR035085.169338
454 Sequencing (SRP001806)
159
234
+
Thr
TGT
[SRA]
>SRA1031482
SRR035087.437272
454 Sequencing (SRP001808)
125
50
-
Thr
TGT
[SRA]
>SRA1040827
SRR035091.156037
454 Sequencing (SRP001812)
474
399
-
Thr
TGT
[SRA]
>SRA1041943
SRR035091.317285
454 Sequencing (SRP001812)
474
399
-
Thr
TGT
[SRA]
Identical group No.453447 (4 seq.)
>WENV170607869
FUWD010863154
[FUWD] metagenome; unknown
169
244
+
Thr
TGT
[ENA]
¢þ
>SRA1026795
SRR035085.292662
454 Sequencing (SRP001806)
181
256
+
Thr
TGT
[SRA]
>SRA1040023
SRR035091.20420
454 Sequencing (SRP001812)
117
42
-
Thr
TGT
[SRA]
>SRA1042447
SRR035091.387869
454 Sequencing (SRP001812)
61
136
+
Thr
TGT
[SRA]
Identical group No.453640 (6 seq.)
>WENV170570842
FLOH01000029
[FLOH] marine metagenome; water
214696
214769
+
Thr
TGT
[ENA]
¢þ
>WENV170607845
FUWD010860552
[FUWD] metagenome; unknown
696
771
+
Thr
TGT
[ENA]
¢þ
>WENV170612279
FUWD012562476
[FUWD] metagenome; unknown
102
27
-
Thr
TGT
[ENA]
¢þ
>SRA1035140
SRR035089.243922
454 Sequencing (SRP001810)
251
176
-
Thr
TGT
[SRA]
>SRA1041597
SRR035091.267987
454 Sequencing (SRP001812)
186
261
+
Thr
TGT
[SRA]
>SRA1050622
SRR035095.308859
454 Sequencing (SRP001816)
529
604
+
Thr
TGT
[SRA]
Identical group No.453771 (2 seq.)
>SRA1035894
SRR035089.398543
454 Sequencing (SRP001810)
19
94
+
Thr
TGT
[SRA]
>SRA1042694
SRR035091.430675
454 Sequencing (SRP001812)
203
128
-
Thr
TGT
[SRA]
Identical group No.484422 (4 seq.)
>WENV170607951
FUWD010873872
[FUWD] metagenome; unknown
132
57
-
Thr
TGT
[ENA]
¢þ
>SRA1031311
SRR035087.410528
454 Sequencing (SRP001808)
252
177
-
Thr
TGT
[SRA]
>SRA1042239
SRR035091.360559
454 Sequencing (SRP001812)
374
301
-
Thr
TGT
[SRA]
>SRA1043570
SRR035092.140327
454 Sequencing (SRP001813)
74
147
+
Thr
TGT
[SRA]
Identical group No.522855 (3 seq.)
>WENV170572527
FLOH01000968
[FLOH] marine metagenome; water
23344
23419
+
Thr
TGT
[ENA]
¢þ
>WENV170572846
FLOH01001426
[FLOH] marine metagenome; water
9973
9898
-
Thr
TGT
[ENA]
¢þ
>SRA1041424
SRR035091.240049
454 Sequencing (SRP001812)
337
262
-
Thr
TGT
[SRA]
Identical group No.547989 (3 seq.)
>WENV170608009
FUWD010882516
[FUWD] metagenome; unknown
235
162
-
Thr
TGT
[ENA]
¢þ
>SRA1033896
SRR035088.398360
454 Sequencing (SRP001809)
235
162
-
Thr
TGT
[SRA]
>SRA1042205
SRR035091.354080
454 Sequencing (SRP001812)
426
499
+
Thr
TGT
[SRA]
Identical group No.547995 (4 seq.)
>WENV170608110
FUWD010894428
[FUWD] metagenome; unknown
288
361
+
Thr
TGT
[ENA]
¢þ
>SRA1016971
SRR035082.62116
454 Sequencing (SRP001803)
298
225
-
Thr
TGT
[SRA]
>SRA1040971
SRR035091.175932
454 Sequencing (SRP001812)
94
167
+
Thr
TGT
[SRA]
>SRA1041251
SRR035091.220220
454 Sequencing (SRP001812)
28
101
+
Thr
TGT
[SRA]
Identical group No.548355 (4 seq.)
>WENV183716140
PDWI01289953
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
136
61
-
Thr
TGT
[ENA]
¢þ
>WENV170612369
FUWD012590269
[FUWD] metagenome; unknown
83
8
-
Thr
TGT
[ENA]
¢þ
>SRA1037977
SRR035090.228250
454 Sequencing (SRP001811)
83
8
-
Thr
TGT
[SRA]
>SRA1040491
SRR035091.105430
454 Sequencing (SRP001812)
279
354
+
Thr
TGT
[SRA]
Identical group No.548359 (3 seq.)
>WENV170612404
FUWD012604595
[FUWD] metagenome; unknown
305
230
-
Thr
TGT
[ENA]
¢þ
>SRA1040270
SRR035091.70160
454 Sequencing (SRP001812)
317
242
-
Thr
TGT
[SRA]
>SRA1041013
SRR035091.181213
454 Sequencing (SRP001812)
247
322
+
Thr
TGT
[SRA]
Identical group No.548364 (3 seq.)
>WENV170612417
FUWD012606118
[FUWD] metagenome; unknown
161
86
-
Thr
TGT
[ENA]
¢þ
>SRA1040374
SRR035091.86554
454 Sequencing (SRP001812)
161
86
-
Thr
TGT
[SRA]
>SRA1048845
SRR035094.261952
454 Sequencing (SRP001815)
219
144
-
Thr
TGT
[SRA]
Identical group No.548374 (2 seq.)
>WENV170612462
FUWD012616444
[FUWD] metagenome; unknown
364
292
-
Thr
TGT
[ENA]
¢þ
>SRA1041109
SRR035091.197873
454 Sequencing (SRP001812)
364
292
-
Thr
TGT
[SRA]
Identical group No.654378 (15 seq.)
>WENV170622237
FUWD013093762
[FUWD] metagenome; unknown
1214
1140
-
Thr
TGT
[ENA]
¢þ
>WENV170626764
FUWD013229349
[FUWD] metagenome; unknown
3577
3651
+
Thr
TGT
[ENA]
¢þ
>WENV170630449
FUWD013308610
[FUWD] metagenome; unknown
1214
1140
-
Thr
TGT
[ENA]
¢þ
>WENV170632643
FUWD013385546
[FUWD] metagenome; unknown
7409
7483
+
Thr
TGT
[ENA]
¢þ
>SRA1019382
SRR035082.446037
454 Sequencing (SRP001803)
234
160
-
Thr
TGT
[SRA]
>SRA1026530
SRR035085.222530
454 Sequencing (SRP001806)
59
133
+
Thr
TGT
[SRA]
>SRA1029820
SRR035087.187542
454 Sequencing (SRP001808)
283
357
+
Thr
TGT
[SRA]
>SRA1040175
SRR035091.53133
454 Sequencing (SRP001812)
254
180
-
Thr
TGT
[SRA]
>SRA1041752
SRR035091.288001
454 Sequencing (SRP001812)
166
92
-
Thr
TGT
[SRA]
>SRA1041810
SRR035091.298185
454 Sequencing (SRP001812)
324
250
-
Thr
TGT
[SRA]
>SRA1042328
SRR035091.373354
454 Sequencing (SRP001812)
276
202
-
Thr
TGT
[SRA]
>SRA1042376
SRR035091.379073
454 Sequencing (SRP001812)
82
156
+
Thr
TGT
[SRA]
>SRA1043737
SRR035092.167347
454 Sequencing (SRP001813)
243
169
-
Thr
TGT
[SRA]
>SRA1044165
SRR035092.234650
454 Sequencing (SRP001813)
122
48
-
Thr
TGT
[SRA]
>SRA1049757
SRR035095.135359
454 Sequencing (SRP001816)
325
251
-
Thr
TGT
[SRA]
Identical group No.654529 (9 seq.)
>WENV170622475
FUWD013106743
[FUWD] metagenome; unknown
630
702
+
Thr
TGT
[ENA]
¢þ
>WENV170630698
FUWD013321104
[FUWD] metagenome; unknown
630
702
+
Thr
TGT
[ENA]
¢þ
>SRA1028903
SRR035087.34547
454 Sequencing (SRP001808)
62
134
+
Thr
TGT
[SRA]
>SRA1033738
SRR035088.340816
454 Sequencing (SRP001809)
36
108
+
Thr
TGT
[SRA]
>SRA1035406
SRR035089.298971
454 Sequencing (SRP001810)
332
260
-
Thr
TGT
[SRA]
>SRA1040168
SRR035091.52213
454 Sequencing (SRP001812)
384
456
+
Thr
TGT
[SRA]
>SRA1049284
SRR035095.50003
454 Sequencing (SRP001816)
15
87
+
Thr
TGT
[SRA]
>SRA1049371
SRR035095.65850
454 Sequencing (SRP001816)
15
87
+
Thr
TGT
[SRA]
>SRA1050597
SRR035095.298316
454 Sequencing (SRP001816)
104
32
-
Thr
TGT
[SRA]
Identical group No.672704 (8 seq.)
>WENV170598987
FUWD010057446
[FUWD] metagenome; unknown
266
342
+
Thr
TGT
[ENA]
¢þ
>WENV170627389
FUWD013232662
[FUWD] metagenome; unknown
986
1062
+
Thr
TGT
[ENA]
¢þ
>SRA1041029
SRR035091.184845
454 Sequencing (SRP001812)
167
91
-
Thr
TGT
[SRA]
>SRA1045925
SRR035093.201200
454 Sequencing (SRP001814)
201
277
+
Thr
TGT
[SRA]
>SRA1046186
SRR035093.250948
454 Sequencing (SRP001814)
388
312
-
Thr
TGT
[SRA]
>SRA1046621
SRR035093.345851
454 Sequencing (SRP001814)
201
277
+
Thr
TGT
[SRA]
>SRA1046785
SRR035093.384442
454 Sequencing (SRP001814)
285
361
+
Thr
TGT
[SRA]
>SRA1047252
SRR035093.496038
454 Sequencing (SRP001814)
310
234
-
Thr
TGT
[SRA]
Identical group No.710499 (6 seq.)
>WENV170600492
FUWD010129541
[FUWD] metagenome; unknown
613
539
-
Thr
TGT
[ENA]
¢þ
>WENV170626170
FUWD013215719
[FUWD] metagenome; unknown
436
362
-
Thr
TGT
[ENA]
¢þ
>SRA1017100
SRR035082.81194
454 Sequencing (SRP001803)
93
19
-
Thr
TGT
[SRA]
>SRA1041730
SRR035091.283847
454 Sequencing (SRP001812)
542
468
-
Thr
TGT
[SRA]
>SRA1043518
SRR035092.130613
454 Sequencing (SRP001813)
278
204
-
Thr
TGT
[SRA]
>SRA1044099
SRR035092.224350
454 Sequencing (SRP001813)
282
208
-
Thr
TGT
[SRA]
Identical group No.710597 (3 seq.)
>WENV170603346
FUWD010303777
[FUWD] metagenome; unknown
514
442
-
Thr
TGT
[ENA]
¢þ
>SRA1037022
SRR035090.60519
454 Sequencing (SRP001811)
263
191
-
Thr
TGT
[SRA]
>SRA1042374
SRR035091.379048
454 Sequencing (SRP001812)
28
100
+
Thr
TGT
[SRA]
Identical group No.710807 (3 seq.)
>WENV170608098
FUWD010893119
[FUWD] metagenome; unknown
36
110
+
Thr
TGT
[ENA]
¢þ
>SRA1040370
SRR035091.86025
454 Sequencing (SRP001812)
141
215
+
Thr
TGT
[SRA]
>SRA1050250
SRR035095.221661
454 Sequencing (SRP001816)
250
176
-
Thr
TGT
[SRA]
Identical group No.710816 (2 seq.)
>WENV170608135
FUWD010895793
[FUWD] metagenome; unknown
76
2
-
Thr
TGT
[ENA]
¢þ
>SRA1041738
SRR035091.285162
454 Sequencing (SRP001812)
135
61
-
Thr
TGT
[SRA]
Identical group No.711080 (4 seq.)
>WENV170612439
FUWD012609883
[FUWD] metagenome; unknown
450
377
-
Thr
TGT
[ENA]
¢þ
>SRA1023379
SRR035084.83628
454 Sequencing (SRP001805)
355
282
-
Thr
TGT
[SRA]
>SRA1023518
SRR035084.115682
454 Sequencing (SRP001805)
355
282
-
Thr
TGT
[SRA]
>SRA1040642
SRR035091.126497
454 Sequencing (SRP001812)
520
447
-
Thr
TGT
[SRA]
Identical group No.711082 (3 seq.)
>WENV170612469
FUWD012618747
[FUWD] metagenome; unknown
175
249
+
Thr
TGT
[ENA]
¢þ
>SRA1041284
SRR035091.223457
454 Sequencing (SRP001812)
175
249
+
Thr
TGT
[SRA]
>SRA1042255
SRR035091.362991
454 Sequencing (SRP001812)
183
109
-
Thr
TGT
[SRA]
Identical group No.711208 (3 seq.)
>WENV170613446
FUWD012804587
[FUWD] metagenome; unknown
42
116
+
Thr
TGT
[ENA]
¢þ
>SRA1018947
SRR035082.374605
454 Sequencing (SRP001803)
202
128
-
Thr
TGT
[SRA]
>SRA1041799
SRR035091.296828
454 Sequencing (SRP001812)
135
61
-
Thr
TGT
[SRA]
Identical group No.711424 (5 seq.)
>WENV170622858
FUWD013123987
[FUWD] metagenome; unknown
835
764
-
Thr
TGT
[ENA]
¢þ
>WENV170631076
FUWD013337534
[FUWD] metagenome; unknown
835
764
-
Thr
TGT
[ENA]
¢þ
>SRA1041017
SRR035091.182396
454 Sequencing (SRP001812)
109
38
-
Thr
TGT
[SRA]
>SRA1049062
SRR035095.13358
454 Sequencing (SRP001816)
326
255
-
Thr
TGT
[SRA]
>SRA1049647
SRR035095.110714
454 Sequencing (SRP001816)
219
290
+
Thr
TGT
[SRA]
Identical group No.711442 (7 seq.)
>WENV170623241
FUWD013142819
[FUWD] metagenome; unknown
401
327
-
Thr
TGT
[ENA]
¢þ
>WENV170631498
FUWD013355018
[FUWD] metagenome; unknown
401
327
-
Thr
TGT
[ENA]
¢þ
>SRA1017968
SRR035082.223022
454 Sequencing (SRP001803)
371
297
-
Thr
TGT
[SRA]
>SRA1034049
SRR035088.468617
454 Sequencing (SRP001809)
249
175
-
Thr
TGT
[SRA]
>SRA1040735
SRR035091.140581
454 Sequencing (SRP001812)
130
56
-
Thr
TGT
[SRA]
>SRA1044381
SRR035092.271152
454 Sequencing (SRP001813)
424
498
+
Thr
TGT
[SRA]
>SRA1050577
SRR035095.295840
454 Sequencing (SRP001816)
92
18
-
Thr
TGT
[SRA]
Identical group No.720244 (2 seq.)
>SRA1042362
SRR035091.377811
454 Sequencing (SRP001812)
174
102
-
Thr
TGT
[SRA]
>SRA1043632
SRR035092.151878
454 Sequencing (SRP001813)
158
86
-
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK