This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TTC
HIT:
32 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167913 (1 seq.)
>SRA1040481
SRR035091.103643
454 Sequencing (SRP001812)
85
9
-
Glu
TTC
[SRA]
Identical group No.167916 (1 seq.)
>SRA1040593
SRR035091.120375
454 Sequencing (SRP001812)
52
129
+
Glu
TTC
[SRA]
Identical group No.167936 (1 seq.)
>SRA1041372
SRR035091.234354
454 Sequencing (SRP001812)
23
97
+
Glu
TTC
[SRA]
Identical group No.167943 (1 seq.)
>SRA1041699
SRR035091.280228
454 Sequencing (SRP001812)
205
282
+
Glu
TTC
[SRA]
Identical group No.167959 (1 seq.)
>SRA1042464
SRR035091.390753
454 Sequencing (SRP001812)
189
266
+
Glu
TTC
[SRA]
Identical group No.167966 (1 seq.)
>SRA1042791
SRR035091.448480
454 Sequencing (SRP001812)
110
33
-
Glu
TTC
[SRA]
Identical group No.242998 (1 seq.)
>SRA1040050
SRR035091.26213
454 Sequencing (SRP001812)
163
89
-
Glu
TTC
[SRA]
Identical group No.355324 (1 seq.)
>SRA1040083
SRR035091.35462
454 Sequencing (SRP001812)
361
289
-
Glu
TTC
[SRA]
Identical group No.355357 (2 seq.)
>SRA1040504
SRR035091.106988
454 Sequencing (SRP001812)
91
19
-
Glu
TTC
[SRA]
>SRA1041288
SRR035091.224023
454 Sequencing (SRP001812)
91
19
-
Glu
TTC
[SRA]
Identical group No.355364 (1 seq.)
>SRA1040590
SRR035091.119758
454 Sequencing (SRP001812)
79
5
-
Glu
TTC
[SRA]
Identical group No.355380 (2 seq.)
>SRA1040825
SRR035091.155378
454 Sequencing (SRP001812)
181
255
+
Glu
TTC
[SRA]
>SRA1041400
SRR035091.237242
454 Sequencing (SRP001812)
179
253
+
Glu
TTC
[SRA]
Identical group No.355451 (1 seq.)
>SRA1041892
SRR035091.311333
454 Sequencing (SRP001812)
319
392
+
Glu
TTC
[SRA]
Identical group No.355459 (1 seq.)
>SRA1042015
SRR035091.328491
454 Sequencing (SRP001812)
259
184
-
Glu
TTC
[SRA]
Identical group No.355470 (1 seq.)
>SRA1042218
SRR035091.357391
454 Sequencing (SRP001812)
298
226
-
Glu
TTC
[SRA]
Identical group No.355471 (1 seq.)
>SRA1042250
SRR035091.362512
454 Sequencing (SRP001812)
332
407
+
Glu
TTC
[SRA]
Identical group No.355498 (1 seq.)
>SRA1042555
SRR035091.408522
454 Sequencing (SRP001812)
386
312
-
Glu
TTC
[SRA]
Identical group No.355499 (1 seq.)
>SRA1042560
SRR035091.408971
454 Sequencing (SRP001812)
350
425
+
Glu
TTC
[SRA]
Identical group No.355521 (1 seq.)
>SRA1042827
SRR035091.451242
454 Sequencing (SRP001812)
143
67
-
Glu
TTC
[SRA]
Identical group No.448021 (1 seq.)
>SRA1040068
SRR035091.30236
454 Sequencing (SRP001812)
87
13
-
Glu
TTC
[SRA]
Identical group No.448024 (2 seq.)
>SRA1040105
SRR035091.39512
454 Sequencing (SRP001812)
358
430
+
Glu
TTC
[SRA]
>SRA1041681
SRR035091.277781
454 Sequencing (SRP001812)
158
230
+
Glu
TTC
[SRA]
Identical group No.448046 (1 seq.)
>SRA1040430
SRR035091.96230
454 Sequencing (SRP001812)
390
316
-
Glu
TTC
[SRA]
Identical group No.448063 (1 seq.)
>SRA1040529
SRR035091.110106
454 Sequencing (SRP001812)
139
213
+
Glu
TTC
[SRA]
Identical group No.448072 (1 seq.)
>SRA1040626
SRR035091.124234
454 Sequencing (SRP001812)
162
236
+
Glu
TTC
[SRA]
Identical group No.448086 (1 seq.)
>SRA1040799
SRR035091.151375
454 Sequencing (SRP001812)
220
146
-
Glu
TTC
[SRA]
Identical group No.448091 (1 seq.)
>SRA1040841
SRR035091.158778
454 Sequencing (SRP001812)
46
120
+
Glu
TTC
[SRA]
Identical group No.448093 (1 seq.)
>SRA1040877
SRR035091.163113
454 Sequencing (SRP001812)
91
163
+
Glu
TTC
[SRA]
Identical group No.448113 (1 seq.)
>SRA1041250
SRR035091.220186
454 Sequencing (SRP001812)
502
428
-
Glu
TTC
[SRA]
Identical group No.448189 (1 seq.)
>SRA1042497
SRR035091.397685
454 Sequencing (SRP001812)
208
281
+
Glu
TTC
[SRA]
Identical group No.448228 (1 seq.)
>SRA1040392
SRR035091.89367
454 Sequencing (SRP001812)
304
376
+
Glu
TTC
[SRA]
Identical group No.448233 (1 seq.)
>SRA1041506
SRR035091.252280
454 Sequencing (SRP001812)
83
157
+
Glu
TTC
[SRA]
Identical group No.502968 (1 seq.)
>SRA1040054
SRR035091.28073
454 Sequencing (SRP001812)
153
81
-
Glu
TTC
[SRA]
Identical group No.503010 (1 seq.)
>SRA1041112
SRR035091.198422
454 Sequencing (SRP001812)
86
13
-
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK