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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TTG
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.167900 (1 seq.)
>SRA1040025
SRR035091.20631
454 Sequencing (SRP001812)
321
244
-
Gln
TTG
[SRA]
Identical group No.243010 (1 seq.)
>SRA1040302
SRR035091.74706
454 Sequencing (SRP001812)
295
219
-
Gln
TTG
[SRA]
Identical group No.355373 (1 seq.)
>SRA1040687
SRR035091.133480
454 Sequencing (SRP001812)
158
232
+
Gln
TTG
[SRA]
Identical group No.355402 (1 seq.)
>SRA1041010
SRR035091.181108
454 Sequencing (SRP001812)
259
184
-
Gln
TTG
[SRA]
Identical group No.355410 (1 seq.)
>SRA1041143
SRR035091.204129
454 Sequencing (SRP001812)
349
274
-
Gln
TTG
[SRA]
Identical group No.355422 (1 seq.)
>SRA1041293
SRR035091.224382
454 Sequencing (SRP001812)
187
113
-
Gln
TTG
[SRA]
Identical group No.355465 (1 seq.)
>SRA1042131
SRR035091.343759
454 Sequencing (SRP001812)
288
361
+
Gln
TTG
[SRA]
Identical group No.355466 (1 seq.)
>SRA1042135
SRR035091.343975
454 Sequencing (SRP001812)
248
322
+
Gln
TTG
[SRA]
Identical group No.355484 (1 seq.)
>SRA1042357
SRR035091.376801
454 Sequencing (SRP001812)
208
134
-
Gln
TTG
[SRA]
Identical group No.355526 (1 seq.)
>SRA1042879
SRR035091.460487
454 Sequencing (SRP001812)
24
99
+
Gln
TTG
[SRA]
Identical group No.448028 (1 seq.)
>SRA1040151
SRR035091.48780
454 Sequencing (SRP001812)
354
427
+
Gln
TTG
[SRA]
Identical group No.448158 (1 seq.)
>SRA1041972
SRR035091.321214
454 Sequencing (SRP001812)
94
20
-
Gln
TTG
[SRA]
Identical group No.448171 (1 seq.)
>SRA1042142
SRR035091.344822
454 Sequencing (SRP001812)
315
389
+
Gln
TTG
[SRA]
Identical group No.448174 (1 seq.)
>SRA1042184
SRR035091.351236
454 Sequencing (SRP001812)
163
89
-
Gln
TTG
[SRA]
Identical group No.448204 (1 seq.)
>SRA1042683
SRR035091.429418
454 Sequencing (SRP001812)
76
2
-
Gln
TTG
[SRA]
Identical group No.448218 (1 seq.)
>SRA1042894
SRR035091.462435
454 Sequencing (SRP001812)
84
156
+
Gln
TTG
[SRA]
Identical group No.502987 (1 seq.)
>SRA1040565
SRR035091.116019
454 Sequencing (SRP001812)
46
117
+
Gln
TTG
[SRA]
Identical group No.502996 (1 seq.)
>SRA1040794
SRR035091.150961
454 Sequencing (SRP001812)
54
128
+
Gln
TTG
[SRA]
Identical group No.503005 (1 seq.)
>SRA1041028
SRR035091.184839
454 Sequencing (SRP001812)
25
98
+
Gln
TTG
[SRA]
Identical group No.503018 (1 seq.)
>SRA1041313
SRR035091.226860
454 Sequencing (SRP001812)
285
358
+
Gln
TTG
[SRA]
Identical group No.503020 (1 seq.)
>SRA1041399
SRR035091.237178
454 Sequencing (SRP001812)
428
501
+
Gln
TTG
[SRA]
Identical group No.503021 (1 seq.)
>SRA1041401
SRR035091.237423
454 Sequencing (SRP001812)
162
89
-
Gln
TTG
[SRA]
Identical group No.503032 (1 seq.)
>SRA1041690
SRR035091.279449
454 Sequencing (SRP001812)
234
307
+
Gln
TTG
[SRA]
Identical group No.503042 (1 seq.)
>SRA1041979
SRR035091.322068
454 Sequencing (SRP001812)
255
328
+
Gln
TTG
[SRA]
Identical group No.503057 (2 seq.)
>SRA1042331
SRR035091.373631
454 Sequencing (SRP001812)
170
241
+
Gln
TTG
[SRA]
>SRA1042941
SRR035091.470926
454 Sequencing (SRP001812)
168
239
+
Gln
TTG
[SRA]
Identical group No.503064 (1 seq.)
>SRA1042559
SRR035091.408917
454 Sequencing (SRP001812)
221
294
+
Gln
TTG
[SRA]
Identical group No.503070 (1 seq.)
>SRA1042667
SRR035091.426807
454 Sequencing (SRP001812)
326
399
+
Gln
TTG
[SRA]
Identical group No.503080 (1 seq.)
>SRA1042942
SRR035091.471087
454 Sequencing (SRP001812)
8
81
+
Gln
TTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK