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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001812)
Anticodon = TTT
HIT:
23 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154172 (1 seq.)
>SRA1040698
SRR035091.134350
454 Sequencing (SRP001812)
218
140
-
Lys
TTT
[SRA]
Identical group No.167914 (1 seq.)
>SRA1040545
SRR035091.112718
454 Sequencing (SRP001812)
220
143
-
Lys
TTT
[SRA]
Identical group No.167918 (1 seq.)
>SRA1040657
SRR035091.128190
454 Sequencing (SRP001812)
141
64
-
Lys
TTT
[SRA]
Identical group No.167935 (1 seq.)
>SRA1041352
SRR035091.231086
454 Sequencing (SRP001812)
153
76
-
Lys
TTT
[SRA]
Identical group No.167949 (1 seq.)
>SRA1042066
SRR035091.333378
454 Sequencing (SRP001812)
276
202
-
Lys
TTT
[SRA]
Identical group No.167967 (1 seq.)
>SRA1042819
SRR035091.450595
454 Sequencing (SRP001812)
14
89
+
Lys
TTT
[SRA]
Identical group No.243035 (1 seq.)
>SRA1040620
SRR035091.123129
454 Sequencing (SRP001812)
321
245
-
Lys
TTT
[SRA]
Identical group No.243044 (1 seq.)
>SRA1040703
SRR035091.134939
454 Sequencing (SRP001812)
16
90
+
Lys
TTT
[SRA]
Identical group No.243071 (1 seq.)
>SRA1041224
SRR035091.216116
454 Sequencing (SRP001812)
228
152
-
Lys
TTT
[SRA]
Identical group No.243118 (1 seq.)
>SRA1041987
SRR035091.323481
454 Sequencing (SRP001812)
115
190
+
Lys
TTT
[SRA]
Identical group No.243143 (1 seq.)
>SRA1042495
SRR035091.397388
454 Sequencing (SRP001812)
142
218
+
Lys
TTT
[SRA]
Identical group No.355338 (1 seq.)
>SRA1040209
SRR035091.59781
454 Sequencing (SRP001812)
51
126
+
Lys
TTT
[SRA]
Identical group No.355341 (1 seq.)
>SRA1040268
SRR035091.69523
454 Sequencing (SRP001812)
171
246
+
Lys
TTT
[SRA]
Identical group No.355343 (1 seq.)
>SRA1040283
SRR035091.72290
454 Sequencing (SRP001812)
442
517
+
Lys
TTT
[SRA]
Identical group No.355372 (1 seq.)
>SRA1040678
SRR035091.131417
454 Sequencing (SRP001812)
179
104
-
Lys
TTT
[SRA]
Identical group No.355377 (1 seq.)
>SRA1040720
SRR035091.136265
454 Sequencing (SRP001812)
78
5
-
Lys
TTT
[SRA]
Identical group No.355404 (1 seq.)
>SRA1041042
SRR035091.186671
454 Sequencing (SRP001812)
114
187
+
Lys
TTT
[SRA]
Identical group No.448059 (1 seq.)
>SRA1040515
SRR035091.108273
454 Sequencing (SRP001812)
188
114
-
Lys
TTT
[SRA]
Identical group No.448090 (1 seq.)
>SRA1040837
SRR035091.158531
454 Sequencing (SRP001812)
367
293
-
Lys
TTT
[SRA]
Identical group No.448102 (1 seq.)
>SRA1041030
SRR035091.184909
454 Sequencing (SRP001812)
381
307
-
Lys
TTT
[SRA]
Identical group No.448214 (1 seq.)
>SRA1042821
SRR035091.450758
454 Sequencing (SRP001812)
143
69
-
Lys
TTT
[SRA]
Identical group No.502970 (1 seq.)
>SRA1040059
SRR035091.29460
454 Sequencing (SRP001812)
286
356
+
Lys
TTT
[SRA]
Identical group No.503091 (1 seq.)
>SRA1040267
SRR035091.69440
454 Sequencing (SRP001812)
100
27
-
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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