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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = AAG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2582 (1 seq.)
>SRA1043808
SRR035092.179055
454 Sequencing (SRP001813)
129
222
+
Leu
AAG
[SRA]
Identical group No.100545 (1 seq.)
>SRA1044678
SRR035092.321543
454 Sequencing (SRP001813)
140
53
-
Leu
AAG
[SRA]
Identical group No.112519 (5 seq.)
>WENV170623607
FUWD013160274
[FUWD] metagenome; unknown
816
899
+
Leu
AAG
[ENA]
¢þ
>WENV170631884
FUWD013369768
[FUWD] metagenome; unknown
816
899
+
Leu
AAG
[ENA]
¢þ
>SRA1025667
SRR035085.63598
454 Sequencing (SRP001806)
202
119
-
Leu
AAG
[SRA]
>SRA1029535
SRR035087.142967
454 Sequencing (SRP001808)
69
152
+
Leu
AAG
[SRA]
>SRA1044715
SRR035092.327280
454 Sequencing (SRP001813)
226
309
+
Leu
AAG
[SRA]
Identical group No.112549 (9 seq.)
>WENV170626926
FUWD013230125
[FUWD] metagenome; unknown
1679
1765
+
Leu
AAG
[ENA]
¢þ
>WENV170630194
FUWD013298004
[FUWD] metagenome; unknown
10550
10464
-
Leu
AAG
[ENA]
¢þ
>SRA1016745
SRR035082.17647
454 Sequencing (SRP001803)
16
102
+
Leu
AAG
[SRA]
>SRA1017037
SRR035082.70702
454 Sequencing (SRP001803)
206
292
+
Leu
AAG
[SRA]
>SRA1017637
SRR035082.172331
454 Sequencing (SRP001803)
247
333
+
Leu
AAG
[SRA]
>SRA1026602
SRR035085.237883
454 Sequencing (SRP001806)
54
140
+
Leu
AAG
[SRA]
>SRA1035724
SRR035089.362611
454 Sequencing (SRP001810)
220
134
-
Leu
AAG
[SRA]
>SRA1044036
SRR035092.212374
454 Sequencing (SRP001813)
502
416
-
Leu
AAG
[SRA]
>SRA1044254
SRR035092.248666
454 Sequencing (SRP001813)
116
202
+
Leu
AAG
[SRA]
Identical group No.112616 (10 seq.)
>WENV170617862
FUWD012940153
[FUWD] metagenome; unknown
599
514
-
Leu
AAG
[ENA]
¢þ
>SRA1017298
SRR035082.114491
454 Sequencing (SRP001803)
119
34
-
Leu
AAG
[SRA]
>SRA1035743
SRR035089.366761
454 Sequencing (SRP001810)
242
157
-
Leu
AAG
[SRA]
>SRA1039971
SRR035091.4467
454 Sequencing (SRP001812)
194
279
+
Leu
AAG
[SRA]
>SRA1041705
SRR035091.280525
454 Sequencing (SRP001812)
20
105
+
Leu
AAG
[SRA]
>SRA1042073
SRR035091.334758
454 Sequencing (SRP001812)
62
147
+
Leu
AAG
[SRA]
>SRA1043895
SRR035092.191664
454 Sequencing (SRP001813)
89
174
+
Leu
AAG
[SRA]
>SRA1045079
SRR035092.406716
454 Sequencing (SRP001813)
99
184
+
Leu
AAG
[SRA]
>SRA1048847
SRR035094.262502
454 Sequencing (SRP001815)
237
152
-
Leu
AAG
[SRA]
>SRA1050537
SRR035095.286014
454 Sequencing (SRP001816)
103
18
-
Leu
AAG
[SRA]
Identical group No.131490 (3 seq.)
>WENV170599648
FUWD010084487
[FUWD] metagenome; unknown
120
205
+
Leu
AAG
[ENA]
¢þ
>SRA1043869
SRR035092.188387
454 Sequencing (SRP001813)
290
205
-
Leu
AAG
[SRA]
>SRA1044445
SRR035092.281594
454 Sequencing (SRP001813)
222
307
+
Leu
AAG
[SRA]
Identical group No.134804 (2 seq.)
>SRA1043308
SRR035092.93257
454 Sequencing (SRP001813)
216
133
-
Leu
AAG
[SRA]
>SRA1044107
SRR035092.225093
454 Sequencing (SRP001813)
216
133
-
Leu
AAG
[SRA]
Identical group No.134808 (1 seq.)
>SRA1043465
SRR035092.120302
454 Sequencing (SRP001813)
34
117
+
Leu
AAG
[SRA]
Identical group No.134819 (1 seq.)
>SRA1043917
SRR035092.193502
454 Sequencing (SRP001813)
257
342
+
Leu
AAG
[SRA]
Identical group No.201075 (1 seq.)
>SRA1043264
SRR035092.85021
454 Sequencing (SRP001813)
108
189
+
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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