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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = ACG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.256247 (1 seq.)
>SRA1043714
SRR035092.163976
454 Sequencing (SRP001813)
384
461
+
Arg
ACG
[SRA]
Identical group No.256277 (1 seq.)
>SRA1044563
SRR035092.301956
454 Sequencing (SRP001813)
236
310
+
Arg
ACG
[SRA]
Identical group No.282085 (37 seq.)
>C171118945
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
2354531
2354607
+
Arg
ACG
-
¡û
>W131180859
ARNL01000044
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
56732
56808
+
Arg
ACG
[ENA]
¡û
>w012757
AAMS01000010
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
75899
75821
-
Arg
ACG
[ENA]
¡û
>WENV170022999
BCQK01098961
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
79
3
-
Arg
ACG
[ENA]
¢þ
>WENV170023953
BCQL01011159
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1111
1187
+
Arg
ACG
[ENA]
¢þ
>WENV170612899
FUWD012736779
[FUWD] metagenome; unknown
175
251
+
Arg
ACG
[ENA]
¢þ
>W09132754
ACOA01000005
Alphaproteobacteria
Thalassobium sp. R2A62 R2A62 [ACOA]
698236
698312
+
Arg
ACG
[ENA]
¡û
>W1910285109
FREV01000004
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
554699
554775
+
Arg
ACG
[ENA]
¡û
>W1910500549
FXZK01000001
Alphaproteobacteria
Flavimaricola marinus CECT 8899 [FXZK]
508051
507975
-
Arg
ACG
[ENA]
¡û
>W1810185221
PKFN01000008
Alphaproteobacteria
Yoonia maritima YPC211 [PKFN]
850085
850161
+
Arg
ACG
[ENA]
¡û
>W1810364923
PVTP01000006
Alphaproteobacteria
Yoonia maritima DSM 101533 [PVTP]
214028
214104
+
Arg
ACG
[ENA]
¡û
>W1810514034
QBUD01000006
Alphaproteobacteria
Yoonia sediminilitoris DSM 29955 [QBUD]
174013
174089
+
Arg
ACG
[ENA]
¡û
>W1810577965
QEOR01000001
Alphaproteobacteria
Thalassobacter stenotrophicus LXJ116 [QEOR]
3389302
3389378
+
Arg
ACG
[ENA]
¡û
>W1810658620
QJJL01000001
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
457071
456995
-
Arg
ACG
[ENA]
¡û
>W1810725088
QOCG01000030
Alphaproteobacteria
Loktanella sp. D2R18 [QOCG]
614119
614195
+
Arg
ACG
[ENA]
¡û
>W1810759653
QPJP01000006
Alphaproteobacteria
Yoonia sediminilitoris CECT 8284 [QPJP]
174013
174089
+
Arg
ACG
[ENA]
¡û
>SRA1044021
SRR035092.210782
454 Sequencing (SRP001813)
270
194
-
Arg
ACG
[SRA]
>SRA1051475
SRR035098.10835
454 Sequencing (SRP001819)
431
355
-
Arg
ACG
[SRA]
>SRA1051544
SRR035098.25869
454 Sequencing (SRP001819)
175
251
+
Arg
ACG
[SRA]
>SRA1052913
SRR035098.298600
454 Sequencing (SRP001819)
262
338
+
Arg
ACG
[SRA]
>W1511002478
JGVS01000007
Alphaproteobacteria
Thalassobacter stenotrophicus 1CONIMAR09 [JGVS]
46214
46290
+
Arg
ACG
[ENA]
¡û
>W1511008145
JHAK01000011
Alphaproteobacteria
Thalassobacter sp. 16PALIMAR09 [JHAK]
10211
10135
-
Arg
ACG
[ENA]
¡û
>W1511518675
JXYE01000004
Alphaproteobacteria
Loktanella sp. S4079 [JXYE]
196137
196213
+
Arg
ACG
[ENA]
¡û
>W1610092658
CYRX01000009
Alphaproteobacteria
Thalassobacter stenotrophicus [CYRX]
212437
212513
+
Arg
ACG
[ENA]
¡û
>W1610628537
LIGP01000004
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
128372
128296
-
Arg
ACG
[ENA]
¡û
>W1610641267
LJAK01000017
Alphaproteobacteria
Loktanella sp. 3ANDIMAR09 [LJAK]
25380
25304
-
Arg
ACG
[ENA]
¡û
>W1610641292
LJAL01000005
Alphaproteobacteria
Loktanella sp. 5RATIMAR09 [LJAL]
82417
82341
-
Arg
ACG
[ENA]
¡û
>WENV074403
AACY023973731
Marine microbial communities from Global Ocean Sampling (GOS)
319
397
+
Arg
ACG
[ENA]
>W1710095913
CYRX01000009
Alphaproteobacteria
Thalassobacter stenotrophicus [CYRX]
212437
212513
+
Arg
ACG
[ENA]
¡û
>W1710546622
FOCI01000003
Alphaproteobacteria
Loktanella fryxellensis [FOCI]
25466
25542
+
Arg
ACG
[ENA]
¡û
>W1710549228
FOEJ01000004
Alphaproteobacteria
Loktanella sp. DSM 29012 [FOEJ]
67945
68021
+
Arg
ACG
[ENA]
¡û
>W1710555052
FOIZ01000003
Alphaproteobacteria
Cognatiyoonia koreensis [FOIZ]
69592
69668
+
Arg
ACG
[ENA]
¡û
>W1710574897
FOYP01000001
Alphaproteobacteria
Yoonia tamlensis [FOYP]
94353
94277
-
Arg
ACG
[ENA]
¡û
>W1710575815
FOZM01000003
Alphaproteobacteria
Yoonia litorea [FOZM]
17162
17086
-
Arg
ACG
[ENA]
¡û
>W1710582704
FQUE01000011
Alphaproteobacteria
Loktanella atrilutea [FQUE]
37314
37238
-
Arg
ACG
[ENA]
¡û
>W1710587987
FQYZ01000006
Alphaproteobacteria
Thalassobacter stenotrophicus DSM 16310 [FQYZ]
193741
193817
+
Arg
ACG
[ENA]
¡û
>W1710600120
FTPR01000003
Alphaproteobacteria
Yoonia rosea [FTPR]
132837
132761
-
Arg
ACG
[ENA]
¡û
Identical group No.294515 (7 seq.)
>WENV170017931
BARV01000369
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
388
464
+
Arg
ACG
[ENA]
¢þ
>WENV170018217
BARV01026272
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
106
182
+
Arg
ACG
[ENA]
¢þ
>WENV170612719
FUWD012668715
[FUWD] metagenome; unknown
186
262
+
Arg
ACG
[ENA]
¢þ
>SRA1033884
SRR035088.392387
454 Sequencing (SRP001809)
283
207
-
Arg
ACG
[SRA]
>SRA1044538
SRR035092.295728
454 Sequencing (SRP001813)
103
27
-
Arg
ACG
[SRA]
>SRA1047825
SRR035094.49490
454 Sequencing (SRP001815)
194
270
+
Arg
ACG
[SRA]
>SRA1050166
SRR035095.204168
454 Sequencing (SRP001816)
212
136
-
Arg
ACG
[SRA]
Identical group No.357995 (4 seq.)
>WENV170608143
FUWD010896167
[FUWD] metagenome; unknown
142
66
-
Arg
ACG
[ENA]
¢þ
>SRA1039151
SRR035090.432771
454 Sequencing (SRP001811)
102
178
+
Arg
ACG
[SRA]
>SRA1041927
SRR035091.315944
454 Sequencing (SRP001812)
142
66
-
Arg
ACG
[SRA]
>SRA1044058
SRR035092.215912
454 Sequencing (SRP001813)
82
6
-
Arg
ACG
[SRA]
Identical group No.358317 (2 seq.)
>WENV170612116
FUWD012506214
[FUWD] metagenome; unknown
111
35
-
Arg
ACG
[ENA]
¢þ
>SRA1045108
SRR035092.411879
454 Sequencing (SRP001813)
21
97
+
Arg
ACG
[SRA]
Identical group No.358368 (3 seq.)
>WENV170612571
FUWD012637263
[FUWD] metagenome; unknown
89
165
+
Arg
ACG
[ENA]
¢þ
>SRA1043044
SRR035092.28850
454 Sequencing (SRP001813)
90
166
+
Arg
ACG
[SRA]
>SRA1043144
SRR035092.57828
454 Sequencing (SRP001813)
89
165
+
Arg
ACG
[SRA]
Identical group No.371924 (1 seq.)
>SRA1042998
SRR035092.17975
454 Sequencing (SRP001813)
325
401
+
Arg
ACG
[SRA]
Identical group No.371938 (1 seq.)
>SRA1043146
SRR035092.58616
454 Sequencing (SRP001813)
154
78
-
Arg
ACG
[SRA]
Identical group No.372040 (2 seq.)
>WENV170001147
AGBJ01007554
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
382
456
+
Arg
ACG
[ENA]
¢þ
>SRA1044264
SRR035092.250269
454 Sequencing (SRP001813)
8
84
+
Arg
ACG
[SRA]
Identical group No.372054 (1 seq.)
>SRA1044426
SRR035092.277711
454 Sequencing (SRP001813)
80
4
-
Arg
ACG
[SRA]
Identical group No.372087 (1 seq.)
>SRA1044827
SRR035092.353176
454 Sequencing (SRP001813)
70
146
+
Arg
ACG
[SRA]
Identical group No.372096 (1 seq.)
>SRA1044946
SRR035092.378678
454 Sequencing (SRP001813)
6
82
+
Arg
ACG
[SRA]
Identical group No.562910 (1 seq.)
>SRA1043682
SRR035092.159751
454 Sequencing (SRP001813)
14
89
+
Arg
ACG
[SRA]
Identical group No.563164 (1 seq.)
>SRA1043343
SRR035092.98585
454 Sequencing (SRP001813)
11
83
+
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK