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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = CAA
HIT:
34 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.57902 (3 seq.)
>WENV170603273
FUWD010297995
[FUWD] metagenome; unknown
707
620
-
Leu
CAA
[ENA]
¢þ
>SRA1017452
SRR035082.141756
454 Sequencing (SRP001803)
206
119
-
Leu
CAA
[SRA]
>SRA1044466
SRR035092.285319
454 Sequencing (SRP001813)
349
262
-
Leu
CAA
[SRA]
Identical group No.60084 (1 seq.)
>SRA1043536
SRR035092.134267
454 Sequencing (SRP001813)
124
37
-
Leu
CAA
[SRA]
Identical group No.98544 (5 seq.)
>WENV170612387
FUWD012596541
[FUWD] metagenome; unknown
64
151
+
Leu
CAA
[ENA]
¢þ
>SRA1038289
SRR035090.280577
454 Sequencing (SRP001811)
176
263
+
Leu
CAA
[SRA]
>SRA1039485
SRR035090.501363
454 Sequencing (SRP001811)
178
265
+
Leu
CAA
[SRA]
>SRA1042349
SRR035091.375618
454 Sequencing (SRP001812)
363
276
-
Leu
CAA
[SRA]
>SRA1044888
SRR035092.367196
454 Sequencing (SRP001813)
377
290
-
Leu
CAA
[SRA]
Identical group No.100522 (1 seq.)
>SRA1042985
SRR035092.13612
454 Sequencing (SRP001813)
233
320
+
Leu
CAA
[SRA]
Identical group No.100532 (1 seq.)
>SRA1043852
SRR035092.185893
454 Sequencing (SRP001813)
435
351
-
Leu
CAA
[SRA]
Identical group No.100539 (1 seq.)
>SRA1044236
SRR035092.246433
454 Sequencing (SRP001813)
394
310
-
Leu
CAA
[SRA]
Identical group No.100543 (1 seq.)
>SRA1044496
SRR035092.290309
454 Sequencing (SRP001813)
362
278
-
Leu
CAA
[SRA]
Identical group No.100559 (1 seq.)
>SRA1045129
SRR035092.416932
454 Sequencing (SRP001813)
68
154
+
Leu
CAA
[SRA]
Identical group No.112518 (5 seq.)
>WENV170623282
FUWD013144322
[FUWD] metagenome; unknown
727
813
+
Leu
CAA
[ENA]
¢þ
>WENV170631541
FUWD013356340
[FUWD] metagenome; unknown
727
813
+
Leu
CAA
[ENA]
¢þ
>SRA1025643
SRR035085.55437
454 Sequencing (SRP001806)
322
408
+
Leu
CAA
[SRA]
>SRA1034526
SRR035089.115747
454 Sequencing (SRP001810)
5
91
+
Leu
CAA
[SRA]
>SRA1043019
SRR035092.22698
454 Sequencing (SRP001813)
114
28
-
Leu
CAA
[SRA]
Identical group No.112601 (12 seq.)
>WENV170619943
FUWD013023303
[FUWD] metagenome; unknown
10479
10563
+
Leu
CAA
[ENA]
¢þ
>WENV170628071
FUWD013241388
[FUWD] metagenome; unknown
10479
10563
+
Leu
CAA
[ENA]
¢þ
>SRA1032604
SRR035088.60687
454 Sequencing (SRP001809)
213
129
-
Leu
CAA
[SRA]
>SRA1032661
SRR035088.74572
454 Sequencing (SRP001809)
168
84
-
Leu
CAA
[SRA]
>SRA1033737
SRR035088.340640
454 Sequencing (SRP001809)
116
200
+
Leu
CAA
[SRA]
>SRA1035307
SRR035089.281419
454 Sequencing (SRP001810)
199
115
-
Leu
CAA
[SRA]
>SRA1035643
SRR035089.347658
454 Sequencing (SRP001810)
125
41
-
Leu
CAA
[SRA]
>SRA1036759
SRR035089.608110
454 Sequencing (SRP001810)
163
79
-
Leu
CAA
[SRA]
>SRA1038321
SRR035090.287510
454 Sequencing (SRP001811)
191
275
+
Leu
CAA
[SRA]
>SRA1039525
SRR035090.508425
454 Sequencing (SRP001811)
337
253
-
Leu
CAA
[SRA]
>SRA1044184
SRR035092.237698
454 Sequencing (SRP001813)
320
404
+
Leu
CAA
[SRA]
>SRA1049672
SRR035095.115167
454 Sequencing (SRP001816)
113
197
+
Leu
CAA
[SRA]
Identical group No.118347 (4 seq.)
>WENV170018503
BARW01029418
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
677
594
-
Leu
CAA
[ENA]
¢þ
>WENV170612069
FUWD012495564
[FUWD] metagenome; unknown
88
5
-
Leu
CAA
[ENA]
¢þ
>SRA1031078
SRR035087.369707
454 Sequencing (SRP001808)
277
194
-
Leu
CAA
[SRA]
>SRA1043450
SRR035092.117525
454 Sequencing (SRP001813)
169
252
+
Leu
CAA
[SRA]
Identical group No.131710 (3 seq.)
>WENV170612654
FUWD012651481
[FUWD] metagenome; unknown
3
87
+
Leu
CAA
[ENA]
¢þ
>SRA1018865
SRR035082.360393
454 Sequencing (SRP001803)
3
87
+
Leu
CAA
[SRA]
>SRA1044286
SRR035092.252977
454 Sequencing (SRP001813)
230
314
+
Leu
CAA
[SRA]
Identical group No.131796 (6 seq.)
>WENV170622236
FUWD013093703
[FUWD] metagenome; unknown
3
89
+
Leu
CAA
[ENA]
¢þ
>WENV170630448
FUWD013308560
[FUWD] metagenome; unknown
3
89
+
Leu
CAA
[ENA]
¢þ
>SRA1018284
SRR035082.268930
454 Sequencing (SRP001803)
196
110
-
Leu
CAA
[SRA]
>SRA1042299
SRR035091.369423
454 Sequencing (SRP001812)
8
94
+
Leu
CAA
[SRA]
>SRA1044032
SRR035092.211826
454 Sequencing (SRP001813)
5
91
+
Leu
CAA
[SRA]
>SRA1045010
SRR035092.391487
454 Sequencing (SRP001813)
14
100
+
Leu
CAA
[SRA]
Identical group No.131808 (4 seq.)
>WENV170623028
FUWD013133552
[FUWD] metagenome; unknown
136
220
+
Leu
CAA
[ENA]
¢þ
>WENV170631263
FUWD013346622
[FUWD] metagenome; unknown
136
220
+
Leu
CAA
[ENA]
¢þ
>SRA1044979
SRR035092.384345
454 Sequencing (SRP001813)
66
150
+
Leu
CAA
[SRA]
>SRA1048265
SRR035094.136793
454 Sequencing (SRP001815)
362
278
-
Leu
CAA
[SRA]
Identical group No.131846 (9 seq.)
>WENV170627198
FUWD013231995
[FUWD] metagenome; unknown
7655
7740
+
Leu
CAA
[ENA]
¢þ
>WENV170632584
FUWD013384746
[FUWD] metagenome; unknown
7655
7740
+
Leu
CAA
[ENA]
¢þ
>SRA1018944
SRR035082.374035
454 Sequencing (SRP001803)
133
48
-
Leu
CAA
[SRA]
>SRA1032848
SRR035088.114419
454 Sequencing (SRP001809)
113
28
-
Leu
CAA
[SRA]
>SRA1040904
SRR035091.167270
454 Sequencing (SRP001812)
6
91
+
Leu
CAA
[SRA]
>SRA1041429
SRR035091.240509
454 Sequencing (SRP001812)
381
296
-
Leu
CAA
[SRA]
>SRA1044993
SRR035092.388058
454 Sequencing (SRP001813)
123
208
+
Leu
CAA
[SRA]
>SRA1045106
SRR035092.411451
454 Sequencing (SRP001813)
314
399
+
Leu
CAA
[SRA]
>SRA1049885
SRR035095.154192
454 Sequencing (SRP001816)
320
235
-
Leu
CAA
[SRA]
Identical group No.134799 (1 seq.)
>SRA1043123
SRR035092.52540
454 Sequencing (SRP001813)
69
154
+
Leu
CAA
[SRA]
Identical group No.134820 (1 seq.)
>SRA1043978
SRR035092.205059
454 Sequencing (SRP001813)
203
286
+
Leu
CAA
[SRA]
Identical group No.134821 (1 seq.)
>SRA1044053
SRR035092.215063
454 Sequencing (SRP001813)
475
389
-
Leu
CAA
[SRA]
Identical group No.134822 (1 seq.)
>SRA1044083
SRR035092.221912
454 Sequencing (SRP001813)
444
359
-
Leu
CAA
[SRA]
Identical group No.134828 (1 seq.)
>SRA1044278
SRR035092.252426
454 Sequencing (SRP001813)
360
444
+
Leu
CAA
[SRA]
Identical group No.134831 (2 seq.)
>SRA1044382
SRR035092.271187
454 Sequencing (SRP001813)
98
184
+
Leu
CAA
[SRA]
>SRA1050401
SRR035095.254855
454 Sequencing (SRP001816)
157
241
+
Leu
CAA
[SRA]
Identical group No.134838 (1 seq.)
>SRA1044659
SRR035092.317961
454 Sequencing (SRP001813)
73
159
+
Leu
CAA
[SRA]
Identical group No.134848 (1 seq.)
>SRA1044855
SRR035092.358494
454 Sequencing (SRP001813)
296
210
-
Leu
CAA
[SRA]
Identical group No.134849 (1 seq.)
>SRA1044868
SRR035092.362140
454 Sequencing (SRP001813)
368
284
-
Leu
CAA
[SRA]
Identical group No.165744 (3 seq.)
>WENV170612517
FUWD012627456
[FUWD] metagenome; unknown
51
135
+
Leu
CAA
[ENA]
¢þ
>SRA1042039
SRR035091.331153
454 Sequencing (SRP001812)
333
417
+
Leu
CAA
[SRA]
>SRA1045071
SRR035092.405739
454 Sequencing (SRP001813)
59
143
+
Leu
CAA
[SRA]
Identical group No.198103 (4 seq.)
>WENV170608138
FUWD010895897
[FUWD] metagenome; unknown
498
414
-
Leu
CAA
[ENA]
¢þ
>SRA1041786
SRR035091.295046
454 Sequencing (SRP001812)
391
307
-
Leu
CAA
[SRA]
>SRA1042478
SRR035091.395017
454 Sequencing (SRP001812)
532
448
-
Leu
CAA
[SRA]
>SRA1042983
SRR035092.12998
454 Sequencing (SRP001813)
250
165
-
Leu
CAA
[SRA]
Identical group No.201079 (1 seq.)
>SRA1043458
SRR035092.119146
454 Sequencing (SRP001813)
135
219
+
Leu
CAA
[SRA]
Identical group No.201081 (1 seq.)
>SRA1043571
SRR035092.140327
454 Sequencing (SRP001813)
494
413
-
Leu
CAA
[SRA]
Identical group No.201084 (1 seq.)
>SRA1043902
SRR035092.191953
454 Sequencing (SRP001813)
91
7
-
Leu
CAA
[SRA]
Identical group No.201095 (1 seq.)
>SRA1044508
SRR035092.290730
454 Sequencing (SRP001813)
388
471
+
Leu
CAA
[SRA]
Identical group No.201100 (1 seq.)
>SRA1044877
SRR035092.363862
454 Sequencing (SRP001813)
81
-1
-
Leu
CAA
[SRA]
Identical group No.232981 (1 seq.)
>SRA1043972
SRR035092.203927
454 Sequencing (SRP001813)
167
248
+
Leu
CAA
[SRA]
Identical group No.254058 (3 seq.)
>WENV170607695
FUWD010849916
[FUWD] metagenome; unknown
713
638
-
Leu
CAA
[ENA]
¢þ
>SRA1041952
SRR035091.317886
454 Sequencing (SRP001812)
67
142
+
Leu
CAA
[SRA]
>SRA1043684
SRR035092.159751
454 Sequencing (SRP001813)
241
316
+
Leu
CAA
[SRA]
Identical group No.371982 (1 seq.)
>SRA1043606
SRR035092.147501
454 Sequencing (SRP001813)
121
197
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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