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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = CCT
HIT:
36 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237277 (2 seq.)
>WENV170599692
FUWD010087029
[FUWD] metagenome; unknown
188
111
-
Arg
CCT
[ENA]
¢þ
>SRA1044232
SRR035092.246154
454 Sequencing (SRP001813)
214
137
-
Arg
CCT
[SRA]
Identical group No.240907 (16 seq.)
>WENV170617863
FUWD012940153
[FUWD] metagenome; unknown
495
419
-
Arg
CCT
[ENA]
¢þ
>SRA1033778
SRR035088.351586
454 Sequencing (SRP001809)
19
95
+
Arg
CCT
[SRA]
>SRA1035744
SRR035089.366761
454 Sequencing (SRP001810)
138
62
-
Arg
CCT
[SRA]
>SRA1036112
SRR035089.447478
454 Sequencing (SRP001810)
270
346
+
Arg
CCT
[SRA]
>SRA1039972
SRR035091.4467
454 Sequencing (SRP001812)
298
374
+
Arg
CCT
[SRA]
>SRA1040017
SRR035091.19236
454 Sequencing (SRP001812)
17
93
+
Arg
CCT
[SRA]
>SRA1041706
SRR035091.280525
454 Sequencing (SRP001812)
124
200
+
Arg
CCT
[SRA]
>SRA1041845
SRR035091.304041
454 Sequencing (SRP001812)
5
81
+
Arg
CCT
[SRA]
>SRA1042074
SRR035091.334758
454 Sequencing (SRP001812)
166
242
+
Arg
CCT
[SRA]
>SRA1043138
SRR035092.56687
454 Sequencing (SRP001813)
49
125
+
Arg
CCT
[SRA]
>SRA1043896
SRR035092.191664
454 Sequencing (SRP001813)
193
269
+
Arg
CCT
[SRA]
>SRA1045080
SRR035092.406716
454 Sequencing (SRP001813)
203
279
+
Arg
CCT
[SRA]
>SRA1048848
SRR035094.262502
454 Sequencing (SRP001815)
133
57
-
Arg
CCT
[SRA]
>SRA1049047
SRR035095.6838
454 Sequencing (SRP001816)
338
262
-
Arg
CCT
[SRA]
>SRA1049071
SRR035095.14260
454 Sequencing (SRP001816)
339
263
-
Arg
CCT
[SRA]
>SRA1050081
SRR035095.188450
454 Sequencing (SRP001816)
491
415
-
Arg
CCT
[SRA]
Identical group No.254212 (4 seq.)
>WENV170620544
FUWD013033555
[FUWD] metagenome; unknown
5288
5213
-
Arg
CCT
[ENA]
¢þ
>WENV170628687
FUWD013250980
[FUWD] metagenome; unknown
5288
5213
-
Arg
CCT
[ENA]
¢þ
>SRA1020878
SRR035083.177394
454 Sequencing (SRP001804)
444
369
-
Arg
CCT
[SRA]
>SRA1044274
SRR035092.251669
454 Sequencing (SRP001813)
297
372
+
Arg
CCT
[SRA]
Identical group No.256244 (1 seq.)
>SRA1043644
SRR035092.154886
454 Sequencing (SRP001813)
289
213
-
Arg
CCT
[SRA]
Identical group No.256252 (1 seq.)
>SRA1043829
SRR035092.181385
454 Sequencing (SRP001813)
299
375
+
Arg
CCT
[SRA]
Identical group No.300562 (8 seq.)
>WENV170621005
FUWD013045665
[FUWD] metagenome; unknown
1295
1219
-
Arg
CCT
[ENA]
¢þ
>WENV170629162
FUWD013262560
[FUWD] metagenome; unknown
1295
1219
-
Arg
CCT
[ENA]
¢þ
>SRA1030733
SRR035087.322291
454 Sequencing (SRP001808)
294
218
-
Arg
CCT
[SRA]
>SRA1037702
SRR035090.176123
454 Sequencing (SRP001811)
309
233
-
Arg
CCT
[SRA]
>SRA1039727
SRR035090.554752
454 Sequencing (SRP001811)
310
234
-
Arg
CCT
[SRA]
>SRA1042029
SRR035091.329304
454 Sequencing (SRP001812)
207
131
-
Arg
CCT
[SRA]
>SRA1044968
SRR035092.381821
454 Sequencing (SRP001813)
269
345
+
Arg
CCT
[SRA]
>SRA1050343
SRR035095.241238
454 Sequencing (SRP001816)
123
199
+
Arg
CCT
[SRA]
Identical group No.357782 (3 seq.)
>WENV170605004
FUWD010441051
[FUWD] metagenome; unknown
187
263
+
Arg
CCT
[ENA]
¢þ
>SRA1019078
SRR035082.398249
454 Sequencing (SRP001803)
150
226
+
Arg
CCT
[SRA]
>SRA1043258
SRR035092.84011
454 Sequencing (SRP001813)
387
311
-
Arg
CCT
[SRA]
Identical group No.358270 (3 seq.)
>WENV170611474
FUWD012326016
[FUWD] metagenome; unknown
179
103
-
Arg
CCT
[ENA]
¢þ
>SRA1016760
SRR035082.20608
454 Sequencing (SRP001803)
320
244
-
Arg
CCT
[SRA]
>SRA1043853
SRR035092.186017
454 Sequencing (SRP001813)
202
278
+
Arg
CCT
[SRA]
Identical group No.358782 (4 seq.)
>WENV170622801
FUWD013121323
[FUWD] metagenome; unknown
895
819
-
Arg
CCT
[ENA]
¢þ
>WENV170631015
FUWD013335060
[FUWD] metagenome; unknown
534
610
+
Arg
CCT
[ENA]
¢þ
>SRA1018432
SRR035082.290510
454 Sequencing (SRP001803)
310
234
-
Arg
CCT
[SRA]
>SRA1044763
SRR035092.336491
454 Sequencing (SRP001813)
185
109
-
Arg
CCT
[SRA]
Identical group No.358797 (3 seq.)
>WENV170623083
FUWD013135814
[FUWD] metagenome; unknown
272
348
+
Arg
CCT
[ENA]
¢þ
>WENV170631322
FUWD013348671
[FUWD] metagenome; unknown
272
348
+
Arg
CCT
[ENA]
¢þ
>SRA1044194
SRR035092.239133
454 Sequencing (SRP001813)
272
348
+
Arg
CCT
[SRA]
Identical group No.371928 (1 seq.)
>SRA1043057
SRR035092.31927
454 Sequencing (SRP001813)
166
240
+
Arg
CCT
[SRA]
Identical group No.371983 (1 seq.)
>SRA1043612
SRR035092.149032
454 Sequencing (SRP001813)
128
54
-
Arg
CCT
[SRA]
Identical group No.372056 (1 seq.)
>SRA1044433
SRR035092.279400
454 Sequencing (SRP001813)
341
265
-
Arg
CCT
[SRA]
Identical group No.372061 (1 seq.)
>SRA1044498
SRR035092.290339
454 Sequencing (SRP001813)
400
324
-
Arg
CCT
[SRA]
Identical group No.372097 (1 seq.)
>SRA1044952
SRR035092.380085
454 Sequencing (SRP001813)
284
209
-
Arg
CCT
[SRA]
Identical group No.453489 (7 seq.)
>WENV170621660
FUWD013067766
[FUWD] metagenome; unknown
709
636
-
Arg
CCT
[ENA]
¢þ
>WENV170629850
FUWD013283605
[FUWD] metagenome; unknown
709
636
-
Arg
CCT
[ENA]
¢þ
>SRA1034350
SRR035089.64093
454 Sequencing (SRP001810)
25
98
+
Arg
CCT
[SRA]
>SRA1034732
SRR035089.162305
454 Sequencing (SRP001810)
425
498
+
Arg
CCT
[SRA]
>SRA1034741
SRR035089.164400
454 Sequencing (SRP001810)
193
120
-
Arg
CCT
[SRA]
>SRA1041701
SRR035091.280472
454 Sequencing (SRP001812)
327
400
+
Arg
CCT
[SRA]
>SRA1044986
SRR035092.386172
454 Sequencing (SRP001813)
288
361
+
Arg
CCT
[SRA]
Identical group No.484337 (9 seq.)
>WENV170622510
FUWD013107458
[FUWD] metagenome; unknown
256
181
-
Arg
CCT
[ENA]
¢þ
>WENV170630735
FUWD013321778
[FUWD] metagenome; unknown
256
181
-
Arg
CCT
[ENA]
¢þ
>SRA1018046
SRR035082.231401
454 Sequencing (SRP001803)
242
167
-
Arg
CCT
[SRA]
>SRA1018175
SRR035082.251552
454 Sequencing (SRP001803)
476
401
-
Arg
CCT
[SRA]
>SRA1030680
SRR035087.312485
454 Sequencing (SRP001808)
473
548
+
Arg
CCT
[SRA]
>SRA1043086
SRR035092.42338
454 Sequencing (SRP001813)
291
366
+
Arg
CCT
[SRA]
>SRA1043396
SRR035092.107418
454 Sequencing (SRP001813)
261
336
+
Arg
CCT
[SRA]
>SRA1054820
SRR035099.222588
454 Sequencing (SRP001820)
251
176
-
Arg
CCT
[SRA]
>SRA1054857
SRR035099.236072
454 Sequencing (SRP001820)
251
176
-
Arg
CCT
[SRA]
Identical group No.484644 (18 seq.)
>WENV183629945
OOGR01000826
[OOGR] marine metagenome; seawater
460
535
+
Arg
CCT
[ENA]
¢þ
>WENV170572981
FLOH01002039
[FLOH] marine metagenome; water
3299
3374
+
Arg
CCT
[ENA]
¢þ
>WENV170599105
FUWD010062999
[FUWD] metagenome; unknown
447
522
+
Arg
CCT
[ENA]
¢þ
>WENV170601973
FUWD010205756
[FUWD] metagenome; unknown
534
459
-
Arg
CCT
[ENA]
¢þ
>WENV170614907
FUWD012844118
[FUWD] metagenome; unknown
435
510
+
Arg
CCT
[ENA]
¢þ
>WENV170614908
FUWD012844119
[FUWD] metagenome; unknown
135
210
+
Arg
CCT
[ENA]
¢þ
>WENV170619907
FUWD013022717
[FUWD] metagenome; unknown
402
475
+
Arg
CCT
[ENA]
¢þ
>WENV170626789
FUWD013229490
[FUWD] metagenome; unknown
7535
7610
+
Arg
CCT
[ENA]
¢þ
>WENV170627505
FUWD013232971
[FUWD] metagenome; unknown
2892
2967
+
Arg
CCT
[ENA]
¢þ
>WENV170630584
FUWD013314421
[FUWD] metagenome; unknown
13881
13954
+
Arg
CCT
[ENA]
¢þ
>SRA1018885
SRR035082.363237
454 Sequencing (SRP001803)
331
256
-
Arg
CCT
[SRA]
>SRA1023272
SRR035084.58950
454 Sequencing (SRP001805)
415
340
-
Arg
CCT
[SRA]
>SRA1023953
SRR035084.214952
454 Sequencing (SRP001805)
195
270
+
Arg
CCT
[SRA]
>SRA1044582
SRR035092.305542
454 Sequencing (SRP001813)
216
143
-
Arg
CCT
[SRA]
>SRA1045863
SRR035093.183451
454 Sequencing (SRP001814)
46
119
+
Arg
CCT
[SRA]
>SRA1046339
SRR035093.283220
454 Sequencing (SRP001814)
128
53
-
Arg
CCT
[SRA]
>SRA1046694
SRR035093.363893
454 Sequencing (SRP001814)
399
474
+
Arg
CCT
[SRA]
>SRA1047199
SRR035093.480859
454 Sequencing (SRP001814)
200
125
-
Arg
CCT
[SRA]
Identical group No.522826 (5 seq.)
>WENV170572338
FLOH01000754
[FLOH] marine metagenome; water
38144
38069
-
Arg
CCT
[ENA]
¢þ
>WENV170572534
FLOH01000971
[FLOH] marine metagenome; water
27185
27260
+
Arg
CCT
[ENA]
¢þ
>WENV170612587
FUWD012641020
[FUWD] metagenome; unknown
76
1
-
Arg
CCT
[ENA]
¢þ
>SRA1043266
SRR035092.85407
454 Sequencing (SRP001813)
156
81
-
Arg
CCT
[SRA]
>SRA1043836
SRR035092.184057
454 Sequencing (SRP001813)
377
452
+
Arg
CCT
[SRA]
Identical group No.562866 (1 seq.)
>SRA1043360
SRR035092.100469
454 Sequencing (SRP001813)
451
376
-
Arg
CCT
[SRA]
Identical group No.562894 (1 seq.)
>SRA1043543
SRR035092.135578
454 Sequencing (SRP001813)
288
213
-
Arg
CCT
[SRA]
Identical group No.562928 (1 seq.)
>SRA1043882
SRR035092.190277
454 Sequencing (SRP001813)
122
47
-
Arg
CCT
[SRA]
Identical group No.562972 (1 seq.)
>SRA1044306
SRR035092.256843
454 Sequencing (SRP001813)
14
89
+
Arg
CCT
[SRA]
Identical group No.562990 (1 seq.)
>SRA1044518
SRR035092.293014
454 Sequencing (SRP001813)
218
143
-
Arg
CCT
[SRA]
Identical group No.563003 (1 seq.)
>SRA1044632
SRR035092.313355
454 Sequencing (SRP001813)
318
243
-
Arg
CCT
[SRA]
Identical group No.654291 (5 seq.)
>WENV170620519
FUWD013033102
[FUWD] metagenome; unknown
652
578
-
Arg
CCT
[ENA]
¢þ
>WENV170628662
FUWD013250548
[FUWD] metagenome; unknown
4356
4430
+
Arg
CCT
[ENA]
¢þ
>SRA1025887
SRR035085.103094
454 Sequencing (SRP001806)
288
362
+
Arg
CCT
[SRA]
>SRA1033526
SRR035088.278921
454 Sequencing (SRP001809)
267
341
+
Arg
CCT
[SRA]
>SRA1043352
SRR035092.99448
454 Sequencing (SRP001813)
408
334
-
Arg
CCT
[SRA]
Identical group No.654358 (5 seq.)
>WENV170623437
FUWD013151479
[FUWD] metagenome; unknown
768
842
+
Arg
CCT
[ENA]
¢þ
>WENV170631513
FUWD013355334
[FUWD] metagenome; unknown
5282
5356
+
Arg
CCT
[ENA]
¢þ
>SRA1026390
SRR035085.199968
454 Sequencing (SRP001806)
383
457
+
Arg
CCT
[SRA]
>SRA1026721
SRR035085.271358
454 Sequencing (SRP001806)
376
450
+
Arg
CCT
[SRA]
>SRA1044795
SRR035092.346566
454 Sequencing (SRP001813)
199
125
-
Arg
CCT
[SRA]
Identical group No.654410 (14 seq.)
>WENV170627291
FUWD013232509
[FUWD] metagenome; unknown
1050
1124
+
Arg
CCT
[ENA]
¢þ
>SRA1026821
SRR035085.303567
454 Sequencing (SRP001806)
87
161
+
Arg
CCT
[SRA]
>SRA1032948
SRR035088.137250
454 Sequencing (SRP001809)
85
159
+
Arg
CCT
[SRA]
>SRA1036187
SRR035089.465834
454 Sequencing (SRP001810)
317
243
-
Arg
CCT
[SRA]
>SRA1040094
SRR035091.37846
454 Sequencing (SRP001812)
10
84
+
Arg
CCT
[SRA]
>SRA1040879
SRR035091.163265
454 Sequencing (SRP001812)
328
254
-
Arg
CCT
[SRA]
>SRA1041881
SRR035091.310269
454 Sequencing (SRP001812)
75
149
+
Arg
CCT
[SRA]
>SRA1042951
SRR035091.472725
454 Sequencing (SRP001812)
53
127
+
Arg
CCT
[SRA]
>SRA1044001
SRR035092.208534
454 Sequencing (SRP001813)
314
240
-
Arg
CCT
[SRA]
>SRA1047872
SRR035094.59292
454 Sequencing (SRP001815)
425
351
-
Arg
CCT
[SRA]
>SRA1048862
SRR035094.265935
454 Sequencing (SRP001815)
100
26
-
Arg
CCT
[SRA]
>SRA1049065
SRR035095.13539
454 Sequencing (SRP001816)
306
380
+
Arg
CCT
[SRA]
>SRA1049206
SRR035095.38023
454 Sequencing (SRP001816)
309
383
+
Arg
CCT
[SRA]
>SRA1049446
SRR035095.79463
454 Sequencing (SRP001816)
417
343
-
Arg
CCT
[SRA]
Identical group No.710534 (3 seq.)
>WENV170601743
FUWD010191354
[FUWD] metagenome; unknown
264
338
+
Arg
CCT
[ENA]
¢þ
>SRA1017794
SRR035082.197352
454 Sequencing (SRP001803)
338
264
-
Arg
CCT
[SRA]
>SRA1043936
SRR035092.197978
454 Sequencing (SRP001813)
168
94
-
Arg
CCT
[SRA]
Identical group No.711097 (3 seq.)
>WENV170612600
FUWD012643481
[FUWD] metagenome; unknown
74
2
-
Arg
CCT
[ENA]
¢þ
>SRA1043474
SRR035092.121395
454 Sequencing (SRP001813)
74
2
-
Arg
CCT
[SRA]
>SRA1044804
SRR035092.348070
454 Sequencing (SRP001813)
177
105
-
Arg
CCT
[SRA]
Identical group No.711108 (2 seq.)
>WENV170612655
FUWD012651571
[FUWD] metagenome; unknown
426
352
-
Arg
CCT
[ENA]
¢þ
>SRA1044296
SRR035092.254609
454 Sequencing (SRP001813)
426
352
-
Arg
CCT
[SRA]
Identical group No.720182 (1 seq.)
>SRA1042997
SRR035092.17975
454 Sequencing (SRP001813)
156
230
+
Arg
CCT
[SRA]
Identical group No.720240 (1 seq.)
>SRA1043620
SRR035092.150227
454 Sequencing (SRP001813)
123
197
+
Arg
CCT
[SRA]
Identical group No.720242 (1 seq.)
>SRA1043630
SRR035092.151731
454 Sequencing (SRP001813)
39
113
+
Arg
CCT
[SRA]
Identical group No.720243 (1 seq.)
>SRA1043631
SRR035092.151858
454 Sequencing (SRP001813)
174
247
+
Arg
CCT
[SRA]
Identical group No.720264 (1 seq.)
>SRA1043818
SRR035092.179882
454 Sequencing (SRP001813)
168
242
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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