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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = CGT
HIT:
29 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272399 (5 seq.)
>WENV170620383
FUWD013030739
[FUWD] metagenome; unknown
2698
2774
+
Thr
CGT
[ENA]
¢þ
>WENV170628521
FUWD013248295
[FUWD] metagenome; unknown
2698
2774
+
Thr
CGT
[ENA]
¢þ
>SRA1026391
SRR035085.200248
454 Sequencing (SRP001806)
363
439
+
Thr
CGT
[SRA]
>SRA1035505
SRR035089.319739
454 Sequencing (SRP001810)
269
345
+
Thr
CGT
[SRA]
>SRA1043460
SRR035092.119451
454 Sequencing (SRP001813)
185
109
-
Thr
CGT
[SRA]
Identical group No.272712 (3 seq.)
>WENV170612288
FUWD012564297
[FUWD] metagenome; unknown
213
289
+
Thr
CGT
[ENA]
¢þ
>SRA1035260
SRR035089.269226
454 Sequencing (SRP001810)
347
423
+
Thr
CGT
[SRA]
>SRA1043576
SRR035092.141116
454 Sequencing (SRP001813)
212
288
+
Thr
CGT
[SRA]
Identical group No.300814 (4 seq.)
>WENV170621795
FUWD013073494
[FUWD] metagenome; unknown
436
509
+
Thr
CGT
[ENA]
¢þ
>WENV170629984
FUWD013289146
[FUWD] metagenome; unknown
436
509
+
Thr
CGT
[ENA]
¢þ
>SRA1032398
SRR035087.621886
454 Sequencing (SRP001808)
122
49
-
Thr
CGT
[SRA]
>SRA1044577
SRR035092.304452
454 Sequencing (SRP001813)
95
22
-
Thr
CGT
[SRA]
Identical group No.372065 (1 seq.)
>SRA1044584
SRR035092.305915
454 Sequencing (SRP001813)
23
97
+
Thr
CGT
[SRA]
Identical group No.484400 (4 seq.)
>WENV170626910
FUWD013230037
[FUWD] metagenome; unknown
1084
1159
+
Thr
CGT
[ENA]
¢þ
>SRA1017448
SRR035082.140454
454 Sequencing (SRP001803)
246
171
-
Thr
CGT
[SRA]
>SRA1031138
SRR035087.379488
454 Sequencing (SRP001808)
233
308
+
Thr
CGT
[SRA]
>SRA1043573
SRR035092.140738
454 Sequencing (SRP001813)
427
502
+
Thr
CGT
[SRA]
Identical group No.548396 (3 seq.)
>WENV170612608
FUWD012644610
[FUWD] metagenome; unknown
154
226
+
Thr
CGT
[ENA]
¢þ
>SRA1043555
SRR035092.137847
454 Sequencing (SRP001813)
155
227
+
Thr
CGT
[SRA]
>SRA1043586
SRR035092.142101
454 Sequencing (SRP001813)
155
227
+
Thr
CGT
[SRA]
Identical group No.548403 (3 seq.)
>WENV170612635
FUWD012648972
[FUWD] metagenome; unknown
175
100
-
Thr
CGT
[ENA]
¢þ
>SRA1041255
SRR035091.220428
454 Sequencing (SRP001812)
440
515
+
Thr
CGT
[SRA]
>SRA1043995
SRR035092.208119
454 Sequencing (SRP001813)
175
100
-
Thr
CGT
[SRA]
Identical group No.548462 (2 seq.)
>WENV170613073
FUWD012779017
[FUWD] metagenome; unknown
780
707
-
Thr
CGT
[ENA]
¢þ
>SRA1044446
SRR035092.281598
454 Sequencing (SRP001813)
286
359
+
Thr
CGT
[SRA]
Identical group No.562814 (1 seq.)
>SRA1042964
SRR035092.6834
454 Sequencing (SRP001813)
109
184
+
Thr
CGT
[SRA]
Identical group No.562840 (1 seq.)
>SRA1043207
SRR035092.73324
454 Sequencing (SRP001813)
79
4
-
Thr
CGT
[SRA]
Identical group No.562863 (1 seq.)
>SRA1043338
SRR035092.98133
454 Sequencing (SRP001813)
100
175
+
Thr
CGT
[SRA]
Identical group No.562887 (1 seq.)
>SRA1043485
SRR035092.123680
454 Sequencing (SRP001813)
141
66
-
Thr
CGT
[SRA]
Identical group No.562914 (1 seq.)
>SRA1043705
SRR035092.162727
454 Sequencing (SRP001813)
289
364
+
Thr
CGT
[SRA]
Identical group No.562918 (1 seq.)
>SRA1043756
SRR035092.171278
454 Sequencing (SRP001813)
28
101
+
Thr
CGT
[SRA]
Identical group No.562965 (1 seq.)
>SRA1044227
SRR035092.245404
454 Sequencing (SRP001813)
275
200
-
Thr
CGT
[SRA]
Identical group No.562978 (1 seq.)
>SRA1044392
SRR035092.272873
454 Sequencing (SRP001813)
173
101
-
Thr
CGT
[SRA]
Identical group No.563022 (1 seq.)
>SRA1044799
SRR035092.347394
454 Sequencing (SRP001813)
303
228
-
Thr
CGT
[SRA]
Identical group No.563030 (1 seq.)
>SRA1044902
SRR035092.370567
454 Sequencing (SRP001813)
348
273
-
Thr
CGT
[SRA]
Identical group No.563046 (1 seq.)
>SRA1045088
SRR035092.407627
454 Sequencing (SRP001813)
304
229
-
Thr
CGT
[SRA]
Identical group No.671273 (14 seq.)
>C171072593
CP018091
Cyanobacteriota
Synechococcus sp. SynAce01 [CP018091]
1912158
1912087
-
Thr
CGT
-
¡û
>w013564
AANO01000002
Cyanobacteriota
Synechococcus sp. WH 5701 [AANO]
265983
266057
+
Thr
CGT
[ENA]
¡û
>WENV170615093
FUWD012848807
[FUWD] metagenome; unknown
1764
1693
-
Thr
CGT
[ENA]
¢þ
>W1911176864
NQKW01000004
Cyanobacteriota
Synechococcus sp. 1G10 [NQKW]
200631
200702
+
Thr
CGT
[ENA]
¡û
>W1911176899
NQKX01000001
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
179424
179353
-
Thr
CGT
[ENA]
¡û
>SRA1044350
SRR035092.264455
454 Sequencing (SRP001813)
140
69
-
Thr
CGT
[SRA]
>SRA1044704
SRR035092.325372
454 Sequencing (SRP001813)
141
70
-
Thr
CGT
[SRA]
>SRA1047986
SRR035094.82446
454 Sequencing (SRP001815)
271
342
+
Thr
CGT
[SRA]
>SRA1048400
SRR035094.165398
454 Sequencing (SRP001815)
270
341
+
Thr
CGT
[SRA]
>SRA1052326
SRR035098.183075
454 Sequencing (SRP001819)
356
427
+
Thr
CGT
[SRA]
>SRA1052628
SRR035098.239329
454 Sequencing (SRP001819)
214
143
-
Thr
CGT
[SRA]
>SRA1052973
SRR035098.310963
454 Sequencing (SRP001819)
465
394
-
Thr
CGT
[SRA]
>SRA1053471
SRR035098.413062
454 Sequencing (SRP001819)
295
366
+
Thr
CGT
[SRA]
>W1511600661
LBTY01000002
Unclassified
candidate division TM6 bacterium GW2011_GWF2_38_10 [LBTY]
64405
64331
-
Thr
CGT
[ENA]
¡û
Identical group No.672536 (3 seq.)
>WENV170612658
FUWD012652208
[FUWD] metagenome; unknown
230
157
-
Thr
CGT
[ENA]
¢þ
>SRA1031199
SRR035087.390278
454 Sequencing (SRP001808)
164
91
-
Thr
CGT
[SRA]
>SRA1044360
SRR035092.266103
454 Sequencing (SRP001813)
230
157
-
Thr
CGT
[SRA]
Identical group No.672590 (14 seq.)
>WENV170626811
FUWD013229674
[FUWD] metagenome; unknown
5297
5223
-
Thr
CGT
[ENA]
¢þ
>SRA1017759
SRR035082.192705
454 Sequencing (SRP001803)
372
446
+
Thr
CGT
[SRA]
>SRA1031676
SRR035087.468918
454 Sequencing (SRP001808)
170
244
+
Thr
CGT
[SRA]
>SRA1040591
SRR035091.120212
454 Sequencing (SRP001812)
135
209
+
Thr
CGT
[SRA]
>SRA1040823
SRR035091.154234
454 Sequencing (SRP001812)
321
395
+
Thr
CGT
[SRA]
>SRA1040878
SRR035091.163147
454 Sequencing (SRP001812)
236
162
-
Thr
CGT
[SRA]
>SRA1041922
SRR035091.315870
454 Sequencing (SRP001812)
192
266
+
Thr
CGT
[SRA]
>SRA1042138
SRR035091.344232
454 Sequencing (SRP001812)
272
198
-
Thr
CGT
[SRA]
>SRA1043225
SRR035092.76755
454 Sequencing (SRP001813)
175
101
-
Thr
CGT
[SRA]
>SRA1044040
SRR035092.212704
454 Sequencing (SRP001813)
82
8
-
Thr
CGT
[SRA]
>SRA1044105
SRR035092.224577
454 Sequencing (SRP001813)
82
8
-
Thr
CGT
[SRA]
>SRA1044191
SRR035092.239048
454 Sequencing (SRP001813)
175
101
-
Thr
CGT
[SRA]
>SRA1044340
SRR035092.262601
454 Sequencing (SRP001813)
428
354
-
Thr
CGT
[SRA]
>SRA1050496
SRR035095.276387
454 Sequencing (SRP001816)
258
184
-
Thr
CGT
[SRA]
Identical group No.672666 (4 seq.)
>WENV170612140
FUWD012511931
[FUWD] metagenome; unknown
77
6
-
Thr
CGT
[ENA]
¢þ
>SRA1032405
SRR035087.622974
454 Sequencing (SRP001808)
210
139
-
Thr
CGT
[SRA]
>SRA1043202
SRR035092.71120
454 Sequencing (SRP001813)
77
6
-
Thr
CGT
[SRA]
>SRA1043296
SRR035092.90904
454 Sequencing (SRP001813)
77
6
-
Thr
CGT
[SRA]
Identical group No.711174 (2 seq.)
>WENV170613149
FUWD012782386
[FUWD] metagenome; unknown
699
773
+
Thr
CGT
[ENA]
¢þ
>SRA1043272
SRR035092.86624
454 Sequencing (SRP001813)
89
15
-
Thr
CGT
[SRA]
Identical group No.720192 (1 seq.)
>SRA1043036
SRR035092.26851
454 Sequencing (SRP001813)
120
194
+
Thr
CGT
[SRA]
Identical group No.720204 (1 seq.)
>SRA1043199
SRR035092.69586
454 Sequencing (SRP001813)
269
195
-
Thr
CGT
[SRA]
Identical group No.720298 (2 seq.)
>SRA1044291
SRR035092.253991
454 Sequencing (SRP001813)
326
252
-
Thr
CGT
[SRA]
>SRA1044448
SRR035092.281770
454 Sequencing (SRP001813)
325
251
-
Thr
CGT
[SRA]
Identical group No.720329 (2 seq.)
>SRA1040621
SRR035091.123135
454 Sequencing (SRP001812)
144
72
-
Thr
CGT
[SRA]
>SRA1044595
SRR035092.308108
454 Sequencing (SRP001813)
237
309
+
Thr
CGT
[SRA]
Identical group No.809557 (3 seq.)
>W1711419011
MHLW01000021
Unclassified
Candidatus Nealsonbacteria bacterium RBG_13_37_56 [MHLW]
22714
22785
+
Thr
CGT
[ENA]
¡û
>WENV170022054
BBPG01011897
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
223
294
+
Thr
CGT
[ENA]
¢þ
>SRA1044897
SRR035092.369810
454 Sequencing (SRP001813)
232
303
+
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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