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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = CTC
HIT:
31 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237289 (3 seq.)
>WENV170607655
FUWD010845082
[FUWD] metagenome; unknown
524
599
+
Glu
CTC
[ENA]
¢þ
>SRA1017084
SRR035082.77698
454 Sequencing (SRP001803)
210
285
+
Glu
CTC
[SRA]
>SRA1043639
SRR035092.153622
454 Sequencing (SRP001813)
350
275
-
Glu
CTC
[SRA]
Identical group No.237306 (2 seq.)
>WENV170612605
FUWD012644372
[FUWD] metagenome; unknown
397
473
+
Glu
CTC
[ENA]
¢þ
>SRA1043535
SRR035092.134105
454 Sequencing (SRP001813)
400
476
+
Glu
CTC
[SRA]
Identical group No.254143 (2 seq.)
>WENV170611966
FUWD012471051
[FUWD] metagenome; unknown
6
81
+
Glu
CTC
[ENA]
¢þ
>SRA1044090
SRR035092.222940
454 Sequencing (SRP001813)
170
245
+
Glu
CTC
[SRA]
Identical group No.256245 (1 seq.)
>SRA1043670
SRR035092.157396
454 Sequencing (SRP001813)
353
428
+
Glu
CTC
[SRA]
Identical group No.371958 (1 seq.)
>SRA1043345
SRR035092.98932
454 Sequencing (SRP001813)
282
207
-
Glu
CTC
[SRA]
Identical group No.453551 (7 seq.)
>WENV170626931
FUWD013230198
[FUWD] metagenome; unknown
10852
10925
+
Glu
CTC
[ENA]
¢þ
>WENV170629809
FUWD013282505
[FUWD] metagenome; unknown
7545
7472
-
Glu
CTC
[ENA]
¢þ
>SRA1018864
SRR035082.359762
454 Sequencing (SRP001803)
280
353
+
Glu
CTC
[SRA]
>SRA1034603
SRR035089.133657
454 Sequencing (SRP001810)
48
121
+
Glu
CTC
[SRA]
>SRA1043954
SRR035092.200520
454 Sequencing (SRP001813)
264
337
+
Glu
CTC
[SRA]
>SRA1044298
SRR035092.255556
454 Sequencing (SRP001813)
399
326
-
Glu
CTC
[SRA]
>SRA1044383
SRR035092.271430
454 Sequencing (SRP001813)
395
468
+
Glu
CTC
[SRA]
Identical group No.548379 (3 seq.)
>WENV170612488
FUWD012621769
[FUWD] metagenome; unknown
1
74
+
Glu
CTC
[ENA]
¢þ
>SRA1041549
SRR035091.258868
454 Sequencing (SRP001812)
369
442
+
Glu
CTC
[SRA]
>SRA1044138
SRR035092.230014
454 Sequencing (SRP001813)
118
45
-
Glu
CTC
[SRA]
Identical group No.562846 (1 seq.)
>SRA1043226
SRR035092.77105
454 Sequencing (SRP001813)
125
50
-
Glu
CTC
[SRA]
Identical group No.562873 (1 seq.)
>SRA1043402
SRR035092.108922
454 Sequencing (SRP001813)
60
135
+
Glu
CTC
[SRA]
Identical group No.562877 (1 seq.)
>SRA1043422
SRR035092.111709
454 Sequencing (SRP001813)
108
183
+
Glu
CTC
[SRA]
Identical group No.562913 (1 seq.)
>SRA1043700
SRR035092.162300
454 Sequencing (SRP001813)
411
483
+
Glu
CTC
[SRA]
Identical group No.654334 (11 seq.)
>WENV170626729
FUWD013229137
[FUWD] metagenome; unknown
6667
6741
+
Glu
CTC
[ENA]
¢þ
>WENV170629676
FUWD013277285
[FUWD] metagenome; unknown
9164
9238
+
Glu
CTC
[ENA]
¢þ
>SRA1018606
SRR035082.320645
454 Sequencing (SRP001803)
223
297
+
Glu
CTC
[SRA]
>SRA1026222
SRR035085.165819
454 Sequencing (SRP001806)
226
300
+
Glu
CTC
[SRA]
>SRA1026255
SRR035085.172990
454 Sequencing (SRP001806)
226
300
+
Glu
CTC
[SRA]
>SRA1032115
SRR035087.555403
454 Sequencing (SRP001808)
232
306
+
Glu
CTC
[SRA]
>SRA1032632
SRR035088.67648
454 Sequencing (SRP001809)
40
114
+
Glu
CTC
[SRA]
>SRA1034123
SRR035088.498464
454 Sequencing (SRP001809)
169
243
+
Glu
CTC
[SRA]
>SRA1043553
SRR035092.137396
454 Sequencing (SRP001813)
189
263
+
Glu
CTC
[SRA]
>SRA1047824
SRR035094.48858
454 Sequencing (SRP001815)
356
430
+
Glu
CTC
[SRA]
>SRA1048978
SRR035094.301169
454 Sequencing (SRP001815)
182
108
-
Glu
CTC
[SRA]
Identical group No.654531 (10 seq.)
>WENV170625265
FUWD013194521
[FUWD] metagenome; unknown
6857
6929
+
Glu
CTC
[ENA]
¢þ
>WENV170633507
FUWD013397406
[FUWD] metagenome; unknown
6857
6929
+
Glu
CTC
[ENA]
¢þ
>SRA1032659
SRR035088.74442
454 Sequencing (SRP001809)
218
146
-
Glu
CTC
[SRA]
>SRA1033100
SRR035088.174577
454 Sequencing (SRP001809)
363
291
-
Glu
CTC
[SRA]
>SRA1033287
SRR035088.215480
454 Sequencing (SRP001809)
353
281
-
Glu
CTC
[SRA]
>SRA1035434
SRR035089.303081
454 Sequencing (SRP001810)
222
150
-
Glu
CTC
[SRA]
>SRA1041229
SRR035091.217435
454 Sequencing (SRP001812)
138
66
-
Glu
CTC
[SRA]
>SRA1041589
SRR035091.266193
454 Sequencing (SRP001812)
92
164
+
Glu
CTC
[SRA]
>SRA1042620
SRR035091.417597
454 Sequencing (SRP001812)
426
354
-
Glu
CTC
[SRA]
>SRA1045030
SRR035092.396759
454 Sequencing (SRP001813)
90
18
-
Glu
CTC
[SRA]
Identical group No.654599 (27 seq.)
>WENV170626768
FUWD013229350
[FUWD] metagenome; unknown
2293
2367
+
Glu
CTC
[ENA]
¢þ
>SRA1017537
SRR035082.158122
454 Sequencing (SRP001803)
71
145
+
Glu
CTC
[SRA]
>SRA1019306
SRR035082.433029
454 Sequencing (SRP001803)
127
198
+
Glu
CTC
[SRA]
>SRA1036177
SRR035089.463450
454 Sequencing (SRP001810)
136
210
+
Glu
CTC
[SRA]
>SRA1036623
SRR035089.565542
454 Sequencing (SRP001810)
254
180
-
Glu
CTC
[SRA]
>SRA1040560
SRR035091.115345
454 Sequencing (SRP001812)
371
297
-
Glu
CTC
[SRA]
>SRA1040982
SRR035091.177378
454 Sequencing (SRP001812)
31
105
+
Glu
CTC
[SRA]
>SRA1041075
SRR035091.192644
454 Sequencing (SRP001812)
143
217
+
Glu
CTC
[SRA]
>SRA1041829
SRR035091.301289
454 Sequencing (SRP001812)
18
92
+
Glu
CTC
[SRA]
>SRA1042238
SRR035091.360315
454 Sequencing (SRP001812)
230
156
-
Glu
CTC
[SRA]
>SRA1042439
SRR035091.386795
454 Sequencing (SRP001812)
95
21
-
Glu
CTC
[SRA]
>SRA1042825
SRR035091.451214
454 Sequencing (SRP001812)
151
77
-
Glu
CTC
[SRA]
>SRA1042898
SRR035091.463246
454 Sequencing (SRP001812)
351
277
-
Glu
CTC
[SRA]
>SRA1043171
SRR035092.63100
454 Sequencing (SRP001813)
166
240
+
Glu
CTC
[SRA]
>SRA1048461
SRR035094.178337
454 Sequencing (SRP001815)
22
96
+
Glu
CTC
[SRA]
>SRA1048582
SRR035094.203213
454 Sequencing (SRP001815)
169
243
+
Glu
CTC
[SRA]
>SRA1048947
SRR035094.295108
454 Sequencing (SRP001815)
254
328
+
Glu
CTC
[SRA]
>SRA1048965
SRR035094.298170
454 Sequencing (SRP001815)
255
329
+
Glu
CTC
[SRA]
>SRA1049717
SRR035095.124322
454 Sequencing (SRP001816)
397
323
-
Glu
CTC
[SRA]
>SRA1049941
SRR035095.163761
454 Sequencing (SRP001816)
252
326
+
Glu
CTC
[SRA]
>SRA1049970
SRR035095.170264
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050172
SRR035095.205889
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050396
SRR035095.252523
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050481
SRR035095.271638
454 Sequencing (SRP001816)
200
126
-
Glu
CTC
[SRA]
>SRA1050530
SRR035095.283863
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050547
SRR035095.289269
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050646
SRR035095.312598
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
Identical group No.672416 (3 seq.)
>WENV170612024
FUWD012484879
[FUWD] metagenome; unknown
192
266
+
Glu
CTC
[ENA]
¢þ
>SRA1030197
SRR035087.240619
454 Sequencing (SRP001808)
192
266
+
Glu
CTC
[SRA]
>SRA1042995
SRR035092.17529
454 Sequencing (SRP001813)
69
143
+
Glu
CTC
[SRA]
Identical group No.695418 (4 seq.)
>WENV170572854
FLOH01001438
[FLOH] marine metagenome; water
19758
19686
-
Glu
CTC
[ENA]
¢þ
>WENV170612623
FUWD012646781
[FUWD] metagenome; unknown
1
75
+
Glu
CTC
[ENA]
¢þ
>SRA1043771
SRR035092.172542
454 Sequencing (SRP001813)
262
336
+
Glu
CTC
[SRA]
>SRA1043958
SRR035092.201383
454 Sequencing (SRP001813)
303
375
+
Glu
CTC
[SRA]
Identical group No.710818 (4 seq.)
>WENV170608142
FUWD010896167
[FUWD] metagenome; unknown
239
167
-
Glu
CTC
[ENA]
¢þ
>SRA1039150
SRR035090.432771
454 Sequencing (SRP001811)
5
77
+
Glu
CTC
[SRA]
>SRA1041926
SRR035091.315944
454 Sequencing (SRP001812)
239
167
-
Glu
CTC
[SRA]
>SRA1044057
SRR035092.215912
454 Sequencing (SRP001813)
179
107
-
Glu
CTC
[SRA]
Identical group No.711079 (4 seq.)
>WENV170612435
FUWD012609468
[FUWD] metagenome; unknown
278
352
+
Glu
CTC
[ENA]
¢þ
>SRA1040225
SRR035091.62586
454 Sequencing (SRP001812)
125
199
+
Glu
CTC
[SRA]
>SRA1040607
SRR035091.121993
454 Sequencing (SRP001812)
308
382
+
Glu
CTC
[SRA]
>SRA1044531
SRR035092.294666
454 Sequencing (SRP001813)
278
352
+
Glu
CTC
[SRA]
Identical group No.720197 (1 seq.)
>SRA1043126
SRR035092.54367
454 Sequencing (SRP001813)
196
122
-
Glu
CTC
[SRA]
Identical group No.720228 (1 seq.)
>SRA1043432
SRR035092.113797
454 Sequencing (SRP001813)
73
-1
-
Glu
CTC
[SRA]
Identical group No.720236 (1 seq.)
>SRA1043581
SRR035092.141640
454 Sequencing (SRP001813)
123
49
-
Glu
CTC
[SRA]
Identical group No.720249 (2 seq.)
>SRA1043666
SRR035092.156642
454 Sequencing (SRP001813)
205
279
+
Glu
CTC
[SRA]
>SRA1043701
SRR035092.162354
454 Sequencing (SRP001813)
30
104
+
Glu
CTC
[SRA]
Identical group No.720285 (1 seq.)
>SRA1044175
SRR035092.236523
454 Sequencing (SRP001813)
234
160
-
Glu
CTC
[SRA]
Identical group No.720314 (1 seq.)
>SRA1044469
SRR035092.285521
454 Sequencing (SRP001813)
65
137
+
Glu
CTC
[SRA]
Identical group No.720322 (1 seq.)
>SRA1044512
SRR035092.292416
454 Sequencing (SRP001813)
16
87
+
Glu
CTC
[SRA]
Identical group No.720324 (1 seq.)
>SRA1044536
SRR035092.295704
454 Sequencing (SRP001813)
167
241
+
Glu
CTC
[SRA]
Identical group No.720345 (1 seq.)
>SRA1044740
SRR035092.331914
454 Sequencing (SRP001813)
178
104
-
Glu
CTC
[SRA]
Identical group No.720351 (1 seq.)
>SRA1044784
SRR035092.343536
454 Sequencing (SRP001813)
55
129
+
Glu
CTC
[SRA]
Identical group No.720366 (1 seq.)
>SRA1044899
SRR035092.370243
454 Sequencing (SRP001813)
88
162
+
Glu
CTC
[SRA]
Identical group No.720376 (1 seq.)
>SRA1044997
SRR035092.389268
454 Sequencing (SRP001813)
241
170
-
Glu
CTC
[SRA]
Identical group No.805280 (4 seq.)
>WENV170612563
FUWD012634373
[FUWD] metagenome; unknown
116
186
+
Glu
CTC
[ENA]
¢þ
>SRA1042766
SRR035091.443841
454 Sequencing (SRP001812)
116
186
+
Glu
CTC
[SRA]
>SRA1042842
SRR035091.454152
454 Sequencing (SRP001812)
115
185
+
Glu
CTC
[SRA]
>SRA1043368
SRR035092.102694
454 Sequencing (SRP001813)
207
277
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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