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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = GAA
HIT:
62 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80355 (1 seq.)
>SRA1044054
SRR035092.215351
454 Sequencing (SRP001813)
481
395
-
Phe
GAA
[SRA]
Identical group No.134842 (1 seq.)
>SRA1044718
SRR035092.327534
454 Sequencing (SRP001813)
190
107
-
Phe
GAA
[SRA]
Identical group No.201098 (1 seq.)
>SRA1044713
SRR035092.326926
454 Sequencing (SRP001813)
232
316
+
Phe
GAA
[SRA]
Identical group No.237694 (1 seq.)
>SRA1044525
SRR035092.294171
454 Sequencing (SRP001813)
141
63
-
Phe
GAA
[SRA]
Identical group No.256284 (1 seq.)
>SRA1044705
SRR035092.325496
454 Sequencing (SRP001813)
49
123
+
Phe
GAA
[SRA]
Identical group No.358384 (2 seq.)
>WENV170612678
FUWD012656639
[FUWD] metagenome; unknown
193
120
-
Phe
GAA
[ENA]
¢þ
>SRA1044883
SRR035092.365335
454 Sequencing (SRP001813)
192
119
-
Phe
GAA
[SRA]
Identical group No.371956 (1 seq.)
>SRA1043323
SRR035092.96634
454 Sequencing (SRP001813)
398
323
-
Phe
GAA
[SRA]
Identical group No.371977 (2 seq.)
>SRA1042779
SRR035091.445109
454 Sequencing (SRP001812)
75
-1
-
Phe
GAA
[SRA]
>SRA1043526
SRR035092.132247
454 Sequencing (SRP001813)
276
202
-
Phe
GAA
[SRA]
Identical group No.371991 (1 seq.)
>SRA1043708
SRR035092.162912
454 Sequencing (SRP001813)
116
40
-
Phe
GAA
[SRA]
Identical group No.372035 (1 seq.)
>SRA1044243
SRR035092.247491
454 Sequencing (SRP001813)
395
322
-
Phe
GAA
[SRA]
Identical group No.453390 (5 seq.)
>WENV170622854
FUWD013123740
[FUWD] metagenome; unknown
204
129
-
Phe
GAA
[ENA]
¢þ
>WENV170631072
FUWD013337290
[FUWD] metagenome; unknown
204
129
-
Phe
GAA
[ENA]
¢þ
>SRA1026379
SRR035085.197101
454 Sequencing (SRP001806)
31
106
+
Phe
GAA
[SRA]
>SRA1036483
SRR035089.531684
454 Sequencing (SRP001810)
313
388
+
Phe
GAA
[SRA]
>SRA1043412
SRR035092.110344
454 Sequencing (SRP001813)
353
428
+
Phe
GAA
[SRA]
Identical group No.484246 (5 seq.)
>WENV170620589
FUWD013034587
[FUWD] metagenome; unknown
900
825
-
Phe
GAA
[ENA]
¢þ
>WENV170628729
FUWD013251961
[FUWD] metagenome; unknown
900
825
-
Phe
GAA
[ENA]
¢þ
>SRA1030072
SRR035087.224304
454 Sequencing (SRP001808)
318
243
-
Phe
GAA
[SRA]
>SRA1040003
SRR035091.14592
454 Sequencing (SRP001812)
148
223
+
Phe
GAA
[SRA]
>SRA1044123
SRR035092.227343
454 Sequencing (SRP001813)
263
338
+
Phe
GAA
[SRA]
Identical group No.484409 (5 seq.)
>WENV170626460
FUWD013223027
[FUWD] metagenome; unknown
1520
1447
-
Phe
GAA
[ENA]
¢þ
>SRA1031202
SRR035087.390718
454 Sequencing (SRP001808)
17
90
+
Phe
GAA
[SRA]
>SRA1041099
SRR035091.195919
454 Sequencing (SRP001812)
433
360
-
Phe
GAA
[SRA]
>SRA1042719
SRR035091.435387
454 Sequencing (SRP001812)
127
200
+
Phe
GAA
[SRA]
>SRA1043454
SRR035092.118735
454 Sequencing (SRP001813)
23
96
+
Phe
GAA
[SRA]
Identical group No.484426 (3 seq.)
>WENV170612066
FUWD012494702
[FUWD] metagenome; unknown
113
188
+
Phe
GAA
[ENA]
¢þ
>SRA1031355
SRR035087.418682
454 Sequencing (SRP001808)
109
184
+
Phe
GAA
[SRA]
>SRA1043768
SRR035092.172307
454 Sequencing (SRP001813)
113
188
+
Phe
GAA
[SRA]
Identical group No.484781 (5 seq.)
>WENV170623288
FUWD013144756
[FUWD] metagenome; unknown
528
456
-
Phe
GAA
[ENA]
¢þ
>WENV170631547
FUWD013356751
[FUWD] metagenome; unknown
528
456
-
Phe
GAA
[ENA]
¢þ
>SRA1029112
SRR035087.75882
454 Sequencing (SRP001808)
151
79
-
Phe
GAA
[SRA]
>SRA1031489
SRR035087.438140
454 Sequencing (SRP001808)
152
80
-
Phe
GAA
[SRA]
>SRA1045033
SRR035092.397093
454 Sequencing (SRP001813)
108
180
+
Phe
GAA
[SRA]
Identical group No.547538 (5 seq.)
>WENV170600382
FUWD010122759
[FUWD] metagenome; unknown
348
273
-
Phe
GAA
[ENA]
¢þ
>WENV170626271
FUWD013217946
[FUWD] metagenome; unknown
1545
1470
-
Phe
GAA
[ENA]
¢þ
>WENV170626273
FUWD013217947
[FUWD] metagenome; unknown
150
75
-
Phe
GAA
[ENA]
¢þ
>SRA1043633
SRR035092.152028
454 Sequencing (SRP001813)
384
309
-
Phe
GAA
[SRA]
>SRA1044041
SRR035092.212963
454 Sequencing (SRP001813)
436
511
+
Phe
GAA
[SRA]
Identical group No.547690 (3 seq.)
>WENV170603309
FUWD010299980
[FUWD] metagenome; unknown
269
194
-
Phe
GAA
[ENA]
¢þ
>SRA1024991
SRR035084.454451
454 Sequencing (SRP001805)
354
279
-
Phe
GAA
[SRA]
>SRA1043502
SRR035092.127723
454 Sequencing (SRP001813)
269
194
-
Phe
GAA
[SRA]
Identical group No.548404 (2 seq.)
>WENV170612641
FUWD012649912
[FUWD] metagenome; unknown
332
407
+
Phe
GAA
[ENA]
¢þ
>SRA1044096
SRR035092.224170
454 Sequencing (SRP001813)
331
406
+
Phe
GAA
[SRA]
Identical group No.548423 (2 seq.)
>WENV170612797
FUWD012691197
[FUWD] metagenome; unknown
223
296
+
Phe
GAA
[ENA]
¢þ
>SRA1044890
SRR035092.367338
454 Sequencing (SRP001813)
91
18
-
Phe
GAA
[SRA]
Identical group No.548662 (4 seq.)
>WENV170620517
FUWD013033096
[FUWD] metagenome; unknown
3950
3875
-
Phe
GAA
[ENA]
¢þ
>WENV170628660
FUWD013250542
[FUWD] metagenome; unknown
3950
3875
-
Phe
GAA
[ENA]
¢þ
>SRA1044949
SRR035092.379379
454 Sequencing (SRP001813)
147
222
+
Phe
GAA
[SRA]
>SRA1044988
SRR035092.387228
454 Sequencing (SRP001813)
147
222
+
Phe
GAA
[SRA]
Identical group No.548805 (3 seq.)
>WENV170622802
FUWD013121323
[FUWD] metagenome; unknown
77
2
-
Phe
GAA
[ENA]
¢þ
>WENV170631016
FUWD013335060
[FUWD] metagenome; unknown
1352
1427
+
Phe
GAA
[ENA]
¢þ
>SRA1044222
SRR035092.244731
454 Sequencing (SRP001813)
146
71
-
Phe
GAA
[SRA]
Identical group No.548810 (4 seq.)
>WENV170622859
FUWD013124072
[FUWD] metagenome; unknown
33
108
+
Phe
GAA
[ENA]
¢þ
>WENV170631077
FUWD013337618
[FUWD] metagenome; unknown
33
108
+
Phe
GAA
[ENA]
¢þ
>SRA1043991
SRR035092.207385
454 Sequencing (SRP001813)
424
349
-
Phe
GAA
[SRA]
>SRA1045067
SRR035092.404878
454 Sequencing (SRP001813)
33
108
+
Phe
GAA
[SRA]
Identical group No.548954 (7 seq.)
>WENV170626723
FUWD013229103
[FUWD] metagenome; unknown
2097
2022
-
Phe
GAA
[ENA]
¢þ
>WENV170629213
FUWD013264420
[FUWD] metagenome; unknown
6059
5984
-
Phe
GAA
[ENA]
¢þ
>SRA1017263
SRR035082.107261
454 Sequencing (SRP001803)
106
31
-
Phe
GAA
[SRA]
>SRA1018774
SRR035082.345574
454 Sequencing (SRP001803)
228
303
+
Phe
GAA
[SRA]
>SRA1041572
SRR035091.262568
454 Sequencing (SRP001812)
145
220
+
Phe
GAA
[SRA]
>SRA1043862
SRR035092.186949
454 Sequencing (SRP001813)
360
435
+
Phe
GAA
[SRA]
>SRA1047751
SRR035094.34837
454 Sequencing (SRP001815)
232
307
+
Phe
GAA
[SRA]
Identical group No.562817 (2 seq.)
>SRA1042984
SRR035092.13612
454 Sequencing (SRP001813)
152
224
+
Phe
GAA
[SRA]
>SRA1042986
SRR035092.14420
454 Sequencing (SRP001813)
152
224
+
Phe
GAA
[SRA]
Identical group No.562829 (1 seq.)
>SRA1043091
SRR035092.43991
454 Sequencing (SRP001813)
226
301
+
Phe
GAA
[SRA]
Identical group No.562830 (1 seq.)
>SRA1043095
SRR035092.45570
454 Sequencing (SRP001813)
54
127
+
Phe
GAA
[SRA]
Identical group No.562835 (1 seq.)
>SRA1043135
SRR035092.55491
454 Sequencing (SRP001813)
295
222
-
Phe
GAA
[SRA]
Identical group No.562897 (1 seq.)
>SRA1043583
SRR035092.141791
454 Sequencing (SRP001813)
95
170
+
Phe
GAA
[SRA]
Identical group No.562931 (1 seq.)
>SRA1043893
SRR035092.191494
454 Sequencing (SRP001813)
428
502
+
Phe
GAA
[SRA]
Identical group No.562933 (1 seq.)
>SRA1043912
SRR035092.192912
454 Sequencing (SRP001813)
101
174
+
Phe
GAA
[SRA]
Identical group No.562944 (1 seq.)
>SRA1044007
SRR035092.209093
454 Sequencing (SRP001813)
341
416
+
Phe
GAA
[SRA]
Identical group No.562960 (1 seq.)
>SRA1044173
SRR035092.236418
454 Sequencing (SRP001813)
119
47
-
Phe
GAA
[SRA]
Identical group No.562970 (1 seq.)
>SRA1044283
SRR035092.252538
454 Sequencing (SRP001813)
118
43
-
Phe
GAA
[SRA]
Identical group No.562976 (1 seq.)
>SRA1044356
SRR035092.265662
454 Sequencing (SRP001813)
372
299
-
Phe
GAA
[SRA]
Identical group No.562984 (1 seq.)
>SRA1044444
SRR035092.281052
454 Sequencing (SRP001813)
277
202
-
Phe
GAA
[SRA]
Identical group No.562987 (1 seq.)
>SRA1044481
SRR035092.286905
454 Sequencing (SRP001813)
281
208
-
Phe
GAA
[SRA]
Identical group No.562998 (1 seq.)
>SRA1044600
SRR035092.308675
454 Sequencing (SRP001813)
448
373
-
Phe
GAA
[SRA]
Identical group No.563021 (1 seq.)
>SRA1044792
SRR035092.346399
454 Sequencing (SRP001813)
189
264
+
Phe
GAA
[SRA]
Identical group No.563039 (1 seq.)
>SRA1044995
SRR035092.388401
454 Sequencing (SRP001813)
61
134
+
Phe
GAA
[SRA]
Identical group No.563043 (1 seq.)
>SRA1045058
SRR035092.401152
454 Sequencing (SRP001813)
257
182
-
Phe
GAA
[SRA]
Identical group No.563168 (1 seq.)
>SRA1044358
SRR035092.265697
454 Sequencing (SRP001813)
55
130
+
Phe
GAA
[SRA]
Identical group No.563172 (1 seq.)
>SRA1044802
SRR035092.347545
454 Sequencing (SRP001813)
225
150
-
Phe
GAA
[SRA]
Identical group No.654601 (12 seq.)
>WENV170627293
FUWD013232509
[FUWD] metagenome; unknown
1223
1297
+
Phe
GAA
[ENA]
¢þ
>SRA1031607
SRR035087.459412
454 Sequencing (SRP001808)
59
133
+
Phe
GAA
[SRA]
>SRA1036189
SRR035089.465834
454 Sequencing (SRP001810)
142
68
-
Phe
GAA
[SRA]
>SRA1040096
SRR035091.37846
454 Sequencing (SRP001812)
183
257
+
Phe
GAA
[SRA]
>SRA1040881
SRR035091.163265
454 Sequencing (SRP001812)
155
81
-
Phe
GAA
[SRA]
>SRA1041883
SRR035091.310269
454 Sequencing (SRP001812)
248
322
+
Phe
GAA
[SRA]
>SRA1042953
SRR035091.472725
454 Sequencing (SRP001812)
224
298
+
Phe
GAA
[SRA]
>SRA1043545
SRR035092.135578
454 Sequencing (SRP001813)
113
39
-
Phe
GAA
[SRA]
>SRA1044003
SRR035092.208534
454 Sequencing (SRP001813)
141
67
-
Phe
GAA
[SRA]
>SRA1044885
SRR035092.366654
454 Sequencing (SRP001813)
423
349
-
Phe
GAA
[SRA]
>SRA1047874
SRR035094.59292
454 Sequencing (SRP001815)
252
178
-
Phe
GAA
[SRA]
>SRA1049448
SRR035095.79463
454 Sequencing (SRP001816)
244
170
-
Phe
GAA
[SRA]
Identical group No.672385 (7 seq.)
>WENV170626112
FUWD013213878
[FUWD] metagenome; unknown
287
359
+
Phe
GAA
[ENA]
¢þ
>SRA1017073
SRR035082.75490
454 Sequencing (SRP001803)
85
157
+
Phe
GAA
[SRA]
>SRA1018015
SRR035082.227325
454 Sequencing (SRP001803)
101
29
-
Phe
GAA
[SRA]
>SRA1019315
SRR035082.434330
454 Sequencing (SRP001803)
168
96
-
Phe
GAA
[SRA]
>SRA1029979
SRR035087.211050
454 Sequencing (SRP001808)
35
107
+
Phe
GAA
[SRA]
>SRA1043227
SRR035092.77314
454 Sequencing (SRP001813)
323
251
-
Phe
GAA
[SRA]
>SRA1043279
SRR035092.88588
454 Sequencing (SRP001813)
288
216
-
Phe
GAA
[SRA]
Identical group No.672616 (11 seq.)
>WENV170625551
FUWD013200123
[FUWD] metagenome; unknown
1301
1229
-
Phe
GAA
[ENA]
¢þ
>WENV170633778
FUWD013402441
[FUWD] metagenome; unknown
1301
1229
-
Phe
GAA
[ENA]
¢þ
>SRA1031940
SRR035087.516230
454 Sequencing (SRP001808)
123
51
-
Phe
GAA
[SRA]
>SRA1033347
SRR035088.231091
454 Sequencing (SRP001809)
355
283
-
Phe
GAA
[SRA]
>SRA1040332
SRR035091.80190
454 Sequencing (SRP001812)
39
111
+
Phe
GAA
[SRA]
>SRA1040414
SRR035091.94823
454 Sequencing (SRP001812)
272
200
-
Phe
GAA
[SRA]
>SRA1041628
SRR035091.270584
454 Sequencing (SRP001812)
413
487
+
Phe
GAA
[SRA]
>SRA1042098
SRR035091.337470
454 Sequencing (SRP001812)
170
242
+
Phe
GAA
[SRA]
>SRA1042707
SRR035091.433473
454 Sequencing (SRP001812)
320
392
+
Phe
GAA
[SRA]
>SRA1044144
SRR035092.230737
454 Sequencing (SRP001813)
130
202
+
Phe
GAA
[SRA]
>SRA1050625
SRR035095.309166
454 Sequencing (SRP001816)
247
319
+
Phe
GAA
[SRA]
Identical group No.695327 (5 seq.)
>WENV170571785
FLOH01000300
[FLOH] marine metagenome; water
3846
3920
+
Phe
GAA
[ENA]
¢þ
>SRA1040945
SRR035091.171968
454 Sequencing (SRP001812)
31
105
+
Phe
GAA
[SRA]
>SRA1041398
SRR035091.237110
454 Sequencing (SRP001812)
74
1
-
Phe
GAA
[SRA]
>SRA1041605
SRR035091.268807
454 Sequencing (SRP001812)
404
332
-
Phe
GAA
[SRA]
>SRA1043798
SRR035092.177773
454 Sequencing (SRP001813)
533
459
-
Phe
GAA
[SRA]
Identical group No.710535 (4 seq.)
>WENV170601745
FUWD010191354
[FUWD] metagenome; unknown
435
507
+
Phe
GAA
[ENA]
¢þ
>SRA1017796
SRR035082.197352
454 Sequencing (SRP001803)
167
95
-
Phe
GAA
[SRA]
>SRA1043166
SRR035092.62482
454 Sequencing (SRP001813)
113
185
+
Phe
GAA
[SRA]
>SRA1043831
SRR035092.182353
454 Sequencing (SRP001813)
33
105
+
Phe
GAA
[SRA]
Identical group No.711103 (2 seq.)
>WENV170612624
FUWD012646829
[FUWD] metagenome; unknown
209
138
-
Phe
GAA
[ENA]
¢þ
>SRA1043775
SRR035092.173099
454 Sequencing (SRP001813)
209
138
-
Phe
GAA
[SRA]
Identical group No.711107 (4 seq.)
>WENV170612648
FUWD012650384
[FUWD] metagenome; unknown
238
164
-
Phe
GAA
[ENA]
¢þ
>SRA1019176
SRR035082.413114
454 Sequencing (SRP001803)
122
48
-
Phe
GAA
[SRA]
>SRA1040115
SRR035091.41491
454 Sequencing (SRP001812)
26
100
+
Phe
GAA
[SRA]
>SRA1044156
SRR035092.232665
454 Sequencing (SRP001813)
257
183
-
Phe
GAA
[SRA]
Identical group No.711566 (15 seq.)
>WENV170627224
FUWD013232152
[FUWD] metagenome; unknown
10191
10120
-
Phe
GAA
[ENA]
¢þ
>WENV170633018
FUWD013390096
[FUWD] metagenome; unknown
10191
10120
-
Phe
GAA
[ENA]
¢þ
>SRA1032590
SRR035088.55639
454 Sequencing (SRP001809)
380
451
+
Phe
GAA
[SRA]
>SRA1041357
SRR035091.232266
454 Sequencing (SRP001812)
363
292
-
Phe
GAA
[SRA]
>SRA1041714
SRR035091.281577
454 Sequencing (SRP001812)
210
139
-
Phe
GAA
[SRA]
>SRA1041793
SRR035091.295667
454 Sequencing (SRP001812)
40
111
+
Phe
GAA
[SRA]
>SRA1042086
SRR035091.335776
454 Sequencing (SRP001812)
107
178
+
Phe
GAA
[SRA]
>SRA1042415
SRR035091.384576
454 Sequencing (SRP001812)
165
94
-
Phe
GAA
[SRA]
>SRA1043191
SRR035092.67191
454 Sequencing (SRP001813)
398
327
-
Phe
GAA
[SRA]
>SRA1048926
SRR035094.288125
454 Sequencing (SRP001815)
317
388
+
Phe
GAA
[SRA]
>SRA1049314
SRR035095.55161
454 Sequencing (SRP001816)
341
270
-
Phe
GAA
[SRA]
>SRA1049811
SRR035095.141635
454 Sequencing (SRP001816)
291
220
-
Phe
GAA
[SRA]
>SRA1049959
SRR035095.168309
454 Sequencing (SRP001816)
113
184
+
Phe
GAA
[SRA]
>SRA1050032
SRR035095.179333
454 Sequencing (SRP001816)
292
221
-
Phe
GAA
[SRA]
>SRA1050428
SRR035095.260360
454 Sequencing (SRP001816)
163
92
-
Phe
GAA
[SRA]
Identical group No.720191 (1 seq.)
>SRA1043030
SRR035092.25425
454 Sequencing (SRP001813)
385
314
-
Phe
GAA
[SRA]
Identical group No.720196 (1 seq.)
>SRA1043084
SRR035092.41852
454 Sequencing (SRP001813)
371
446
+
Phe
GAA
[SRA]
Identical group No.720211 (1 seq.)
>SRA1043269
SRR035092.85619
454 Sequencing (SRP001813)
367
441
+
Phe
GAA
[SRA]
Identical group No.720226 (1 seq.)
>SRA1043406
SRR035092.109449
454 Sequencing (SRP001813)
46
120
+
Phe
GAA
[SRA]
Identical group No.720262 (1 seq.)
>SRA1043802
SRR035092.178257
454 Sequencing (SRP001813)
156
230
+
Phe
GAA
[SRA]
Identical group No.720276 (1 seq.)
>SRA1044047
SRR035092.214278
454 Sequencing (SRP001813)
343
416
+
Phe
GAA
[SRA]
Identical group No.720284 (1 seq.)
>SRA1044170
SRR035092.234872
454 Sequencing (SRP001813)
236
162
-
Phe
GAA
[SRA]
Identical group No.720290 (1 seq.)
>SRA1044229
SRR035092.245585
454 Sequencing (SRP001813)
286
357
+
Phe
GAA
[SRA]
Identical group No.720347 (1 seq.)
>SRA1044746
SRR035092.333380
454 Sequencing (SRP001813)
443
369
-
Phe
GAA
[SRA]
Identical group No.720369 (1 seq.)
>SRA1044915
SRR035092.372663
454 Sequencing (SRP001813)
108
36
-
Phe
GAA
[SRA]
Identical group No.809468 (1 seq.)
>SRA1043389
SRR035092.106486
454 Sequencing (SRP001813)
347
275
-
Phe
GAA
[SRA]
Identical group No.809613 (1 seq.)
>SRA1042968
SRR035092.8908
454 Sequencing (SRP001813)
94
167
+
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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