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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = GCC
HIT:
33 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237700 (1 seq.)
>SRA1044940
SRR035092.377109
454 Sequencing (SRP001813)
232
310
+
Gly
GCC
[SRA]
Identical group No.254016 (2 seq.)
>WENV170605143
FUWD010454091
[FUWD] metagenome; unknown
299
222
-
Gly
GCC
[ENA]
¢þ
>SRA1044387
SRR035092.272375
454 Sequencing (SRP001813)
163
86
-
Gly
GCC
[SRA]
Identical group No.256233 (1 seq.)
>SRA1043118
SRR035092.51446
454 Sequencing (SRP001813)
67
142
+
Gly
GCC
[SRA]
Identical group No.300804 (7 seq.)
>WENV170602361
FUWD010230887
[FUWD] metagenome; unknown
555
479
-
Gly
GCC
[ENA]
¢þ
>WENV170626646
FUWD013227776
[FUWD] metagenome; unknown
1056
1132
+
Gly
GCC
[ENA]
¢þ
>SRA1032275
SRR035087.593228
454 Sequencing (SRP001808)
269
193
-
Gly
GCC
[SRA]
>SRA1042046
SRR035091.332345
454 Sequencing (SRP001812)
155
79
-
Gly
GCC
[SRA]
>SRA1043892
SRR035092.191494
454 Sequencing (SRP001813)
112
188
+
Gly
GCC
[SRA]
>SRA1048462
SRR035094.178525
454 Sequencing (SRP001815)
291
215
-
Gly
GCC
[SRA]
>SRA1048970
SRR035094.298967
454 Sequencing (SRP001815)
293
217
-
Gly
GCC
[SRA]
Identical group No.335127 (6 seq.)
>WENV170571791
FLOH01000300
[FLOH] marine metagenome; water
4817
4741
-
Gly
GCC
[ENA]
¢þ
>WENV170612570
FUWD012636901
[FUWD] metagenome; unknown
134
60
-
Gly
GCC
[ENA]
¢þ
>SRA1018622
SRR035082.323928
454 Sequencing (SRP001803)
288
362
+
Gly
GCC
[SRA]
>SRA1042063
SRR035091.333324
454 Sequencing (SRP001812)
140
216
+
Gly
GCC
[SRA]
>SRA1042699
SRR035091.431839
454 Sequencing (SRP001812)
319
243
-
Gly
GCC
[SRA]
>SRA1043023
SRR035092.23431
454 Sequencing (SRP001813)
400
326
-
Gly
GCC
[SRA]
Identical group No.358943 (5 seq.)
>WENV170626733
FUWD013229155
[FUWD] metagenome; unknown
3304
3230
-
Gly
GCC
[ENA]
¢þ
>WENV170629998
FUWD013289331
[FUWD] metagenome; unknown
8608
8534
-
Gly
GCC
[ENA]
¢þ
>SRA1016867
SRR035082.44910
454 Sequencing (SRP001803)
17
91
+
Gly
GCC
[SRA]
>SRA1044357
SRR035092.265662
454 Sequencing (SRP001813)
262
188
-
Gly
GCC
[SRA]
>SRA1049509
SRR035095.87911
454 Sequencing (SRP001816)
339
413
+
Gly
GCC
[SRA]
Identical group No.372068 (1 seq.)
>SRA1044601
SRR035092.308675
454 Sequencing (SRP001813)
370
294
-
Gly
GCC
[SRA]
Identical group No.372078 (1 seq.)
>SRA1044739
SRR035092.331901
454 Sequencing (SRP001813)
301
377
+
Gly
GCC
[SRA]
Identical group No.562822 (1 seq.)
>SRA1043029
SRR035092.24615
454 Sequencing (SRP001813)
51
126
+
Gly
GCC
[SRA]
Identical group No.654398 (11 seq.)
>WENV170601746
FUWD010191354
[FUWD] metagenome; unknown
514
588
+
Gly
GCC
[ENA]
¢þ
>WENV170627294
FUWD013232509
[FUWD] metagenome; unknown
1359
1433
+
Gly
GCC
[ENA]
¢þ
>SRA1017797
SRR035082.197352
454 Sequencing (SRP001803)
88
14
-
Gly
GCC
[SRA]
>SRA1026694
SRR035085.262121
454 Sequencing (SRP001806)
62
136
+
Gly
GCC
[SRA]
>SRA1041884
SRR035091.310269
454 Sequencing (SRP001812)
382
457
+
Gly
GCC
[SRA]
>SRA1042136
SRR035091.344224
454 Sequencing (SRP001812)
20
94
+
Gly
GCC
[SRA]
>SRA1043167
SRR035092.62482
454 Sequencing (SRP001813)
192
266
+
Gly
GCC
[SRA]
>SRA1043832
SRR035092.182353
454 Sequencing (SRP001813)
112
186
+
Gly
GCC
[SRA]
>SRA1044886
SRR035092.366654
454 Sequencing (SRP001813)
288
214
-
Gly
GCC
[SRA]
>SRA1047875
SRR035094.59292
454 Sequencing (SRP001815)
116
42
-
Gly
GCC
[SRA]
>SRA1049449
SRR035095.79463
454 Sequencing (SRP001816)
108
34
-
Gly
GCC
[SRA]
Identical group No.672281 (12 seq.)
>WENV170625552
FUWD013200123
[FUWD] metagenome; unknown
451
377
-
Gly
GCC
[ENA]
¢þ
>WENV170633779
FUWD013402441
[FUWD] metagenome; unknown
451
377
-
Gly
GCC
[ENA]
¢þ
>SRA1017731
SRR035082.186704
454 Sequencing (SRP001803)
90
16
-
Gly
GCC
[SRA]
>SRA1029090
SRR035087.70837
454 Sequencing (SRP001808)
188
116
-
Gly
GCC
[SRA]
>SRA1033800
SRR035088.359336
454 Sequencing (SRP001809)
217
291
+
Gly
GCC
[SRA]
>SRA1040182
SRR035091.54114
454 Sequencing (SRP001812)
26
100
+
Gly
GCC
[SRA]
>SRA1040985
SRR035091.177885
454 Sequencing (SRP001812)
413
339
-
Gly
GCC
[SRA]
>SRA1041307
SRR035091.226191
454 Sequencing (SRP001812)
142
216
+
Gly
GCC
[SRA]
>SRA1042471
SRR035091.393168
454 Sequencing (SRP001812)
114
40
-
Gly
GCC
[SRA]
>SRA1043131
SRR035092.55002
454 Sequencing (SRP001813)
46
120
+
Gly
GCC
[SRA]
>SRA1048789
SRR035094.248842
454 Sequencing (SRP001815)
300
226
-
Gly
GCC
[SRA]
>SRA1049978
SRR035095.171186
454 Sequencing (SRP001816)
213
287
+
Gly
GCC
[SRA]
Identical group No.679438 (7 seq.)
>WENV180251009
OBEQ010331433
[OBEQ] groundwater metagenome; groundwater
167
239
+
Gly
GCC
[ENA]
¢þ
>WENV181190025
OEOF01404329
[OEOF] activated sludge metagenome; Activated Sludge
184
112
-
Gly
GCC
[ENA]
¢þ
>WENV170622860
FUWD013124072
[FUWD] metagenome; unknown
116
190
+
Gly
GCC
[ENA]
¢þ
>WENV170631078
FUWD013337618
[FUWD] metagenome; unknown
116
190
+
Gly
GCC
[ENA]
¢þ
>W1910718187
MFZP01000028
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_02_FULL_39_9 [MFZP]
36704
36776
+
Gly
GCC
[ENA]
¡û
>W1910718566
MGAA01000051
Unclassified
Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_12_FULL_39_8 [MGAA]
1178
1106
-
Gly
GCC
[ENA]
¡û
>SRA1045068
SRR035092.404878
454 Sequencing (SRP001813)
116
190
+
Gly
GCC
[SRA]
Identical group No.710797 (4 seq.)
>WENV170608003
FUWD010881878
[FUWD] metagenome; unknown
93
165
+
Gly
GCC
[ENA]
¢þ
>SRA1016896
SRR035082.49026
454 Sequencing (SRP001803)
114
186
+
Gly
GCC
[SRA]
>SRA1033750
SRR035088.345339
454 Sequencing (SRP001809)
260
332
+
Gly
GCC
[SRA]
>SRA1044323
SRR035092.260062
454 Sequencing (SRP001813)
384
310
-
Gly
GCC
[SRA]
Identical group No.711544 (4 seq.)
>WENV170626461
FUWD013223027
[FUWD] metagenome; unknown
1439
1365
-
Gly
GCC
[ENA]
¢þ
>SRA1042720
SRR035091.435387
454 Sequencing (SRP001812)
208
282
+
Gly
GCC
[SRA]
>SRA1043455
SRR035092.118735
454 Sequencing (SRP001813)
104
178
+
Gly
GCC
[SRA]
>SRA1043527
SRR035092.132247
454 Sequencing (SRP001813)
194
120
-
Gly
GCC
[SRA]
Identical group No.720179 (1 seq.)
>SRA1042963
SRR035092.6422
454 Sequencing (SRP001813)
304
231
-
Gly
GCC
[SRA]
Identical group No.720217 (1 seq.)
>SRA1043314
SRR035092.93872
454 Sequencing (SRP001813)
93
167
+
Gly
GCC
[SRA]
Identical group No.720230 (1 seq.)
>SRA1043479
SRR035092.122196
454 Sequencing (SRP001813)
214
288
+
Gly
GCC
[SRA]
Identical group No.720233 (1 seq.)
>SRA1043546
SRR035092.135982
454 Sequencing (SRP001813)
204
133
-
Gly
GCC
[SRA]
Identical group No.720265 (1 seq.)
>SRA1043821
SRR035092.180539
454 Sequencing (SRP001813)
14
85
+
Gly
GCC
[SRA]
Identical group No.720268 (1 seq.)
>SRA1043881
SRR035092.190220
454 Sequencing (SRP001813)
341
267
-
Gly
GCC
[SRA]
Identical group No.720331 (2 seq.)
>SRA1042865
SRR035091.457737
454 Sequencing (SRP001812)
459
387
-
Gly
GCC
[SRA]
>SRA1044613
SRR035092.309334
454 Sequencing (SRP001813)
78
6
-
Gly
GCC
[SRA]
Identical group No.720348 (1 seq.)
>SRA1044748
SRR035092.333380
454 Sequencing (SRP001813)
273
201
-
Gly
GCC
[SRA]
Identical group No.720352 (1 seq.)
>SRA1044793
SRR035092.346399
454 Sequencing (SRP001813)
265
339
+
Gly
GCC
[SRA]
Identical group No.720354 (1 seq.)
>SRA1044805
SRR035092.348268
454 Sequencing (SRP001813)
283
212
-
Gly
GCC
[SRA]
Identical group No.720389 (1 seq.)
>SRA1045134
SRR035092.418013
454 Sequencing (SRP001813)
193
121
-
Gly
GCC
[SRA]
Identical group No.788305 (7 seq.)
>WENV170625114
FUWD013191672
[FUWD] metagenome; unknown
432
359
-
Gly
GCC
[ENA]
¢þ
>WENV170633371
FUWD013394949
[FUWD] metagenome; unknown
432
359
-
Gly
GCC
[ENA]
¢þ
>SRA1045015
SRR035092.392977
454 Sequencing (SRP001813)
53
126
+
Gly
GCC
[SRA]
>SRA1047144
SRR035093.466281
454 Sequencing (SRP001814)
278
205
-
Gly
GCC
[SRA]
>SRA1051454
SRR035098.4898
454 Sequencing (SRP001819)
339
266
-
Gly
GCC
[SRA]
>SRA1052504
SRR035098.216410
454 Sequencing (SRP001819)
167
94
-
Gly
GCC
[SRA]
>SRA1053697
SRR035098.469559
454 Sequencing (SRP001819)
32
105
+
Gly
GCC
[SRA]
Identical group No.809460 (1 seq.)
>SRA1043187
SRR035092.66250
454 Sequencing (SRP001813)
93
21
-
Gly
GCC
[SRA]
Identical group No.809472 (1 seq.)
>SRA1043425
SRR035092.112544
454 Sequencing (SRP001813)
276
205
-
Gly
GCC
[SRA]
Identical group No.809479 (1 seq.)
>SRA1043551
SRR035092.137078
454 Sequencing (SRP001813)
12
82
+
Gly
GCC
[SRA]
Identical group No.809485 (1 seq.)
>SRA1043627
SRR035092.151363
454 Sequencing (SRP001813)
192
120
-
Gly
GCC
[SRA]
Identical group No.809506 (1 seq.)
>SRA1043935
SRR035092.197708
454 Sequencing (SRP001813)
137
209
+
Gly
GCC
[SRA]
Identical group No.809561 (1 seq.)
>SRA1044956
SRR035092.380738
454 Sequencing (SRP001813)
244
315
+
Gly
GCC
[SRA]
Identical group No.809565 (1 seq.)
>SRA1045019
SRR035092.393744
454 Sequencing (SRP001813)
144
217
+
Gly
GCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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