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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = GCG
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237281 (3 seq.)
>WENV170603274
FUWD010297995
[FUWD] metagenome; unknown
619
541
-
Arg
GCG
[ENA]
¢þ
>SRA1017453
SRR035082.141756
454 Sequencing (SRP001803)
118
40
-
Arg
GCG
[SRA]
>SRA1044467
SRR035092.285319
454 Sequencing (SRP001813)
261
183
-
Arg
GCG
[SRA]
Identical group No.237701 (1 seq.)
>SRA1044942
SRR035092.378061
454 Sequencing (SRP001813)
431
509
+
Arg
GCG
[SRA]
Identical group No.244496 (6 seq.)
>WENV170620841
FUWD013041031
[FUWD] metagenome; unknown
947
1024
+
Arg
GCG
[ENA]
¢þ
>WENV170628996
FUWD013258121
[FUWD] metagenome; unknown
2903
2826
-
Arg
GCG
[ENA]
¢þ
>SRA1018830
SRR035082.354343
454 Sequencing (SRP001803)
217
140
-
Arg
GCG
[SRA]
>SRA1030645
SRR035087.308797
454 Sequencing (SRP001808)
70
147
+
Arg
GCG
[SRA]
>SRA1040071
SRR035091.30673
454 Sequencing (SRP001812)
181
258
+
Arg
GCG
[SRA]
>SRA1044379
SRR035092.270893
454 Sequencing (SRP001813)
85
8
-
Arg
GCG
[SRA]
Identical group No.256267 (1 seq.)
>SRA1044203
SRR035092.240411
454 Sequencing (SRP001813)
407
330
-
Arg
GCG
[SRA]
Identical group No.272941 (4 seq.)
>WENV170612345
FUWD012582798
[FUWD] metagenome; unknown
243
167
-
Arg
GCG
[ENA]
¢þ
>SRA1019645
SRR035082.494849
454 Sequencing (SRP001803)
107
31
-
Arg
GCG
[SRA]
>SRA1036671
SRR035089.579250
454 Sequencing (SRP001810)
243
167
-
Arg
GCG
[SRA]
>SRA1044035
SRR035092.212367
454 Sequencing (SRP001813)
101
25
-
Arg
GCG
[SRA]
Identical group No.358874 (19 seq.)
>WENV170624311
FUWD013179602
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>WENV170632598
FUWD013384921
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>SRA1018549
SRR035082.308810
454 Sequencing (SRP001803)
361
437
+
Arg
GCG
[SRA]
>SRA1018615
SRR035082.322433
454 Sequencing (SRP001803)
293
217
-
Arg
GCG
[SRA]
>SRA1033830
SRR035088.368272
454 Sequencing (SRP001809)
288
212
-
Arg
GCG
[SRA]
>SRA1039979
SRR035091.8881
454 Sequencing (SRP001812)
20
96
+
Arg
GCG
[SRA]
>SRA1040335
SRR035091.80670
454 Sequencing (SRP001812)
410
334
-
Arg
GCG
[SRA]
>SRA1040364
SRR035091.85167
454 Sequencing (SRP001812)
239
315
+
Arg
GCG
[SRA]
>SRA1040753
SRR035091.143597
454 Sequencing (SRP001812)
206
130
-
Arg
GCG
[SRA]
>SRA1040866
SRR035091.160897
454 Sequencing (SRP001812)
144
68
-
Arg
GCG
[SRA]
>SRA1041203
SRR035091.213004
454 Sequencing (SRP001812)
157
81
-
Arg
GCG
[SRA]
>SRA1041844
SRR035091.303898
454 Sequencing (SRP001812)
80
4
-
Arg
GCG
[SRA]
>SRA1041896
SRR035091.312805
454 Sequencing (SRP001812)
47
123
+
Arg
GCG
[SRA]
>SRA1042949
SRR035091.472250
454 Sequencing (SRP001812)
100
176
+
Arg
GCG
[SRA]
>SRA1042989
SRR035092.15941
454 Sequencing (SRP001813)
363
287
-
Arg
GCG
[SRA]
>SRA1043930
SRR035092.196474
454 Sequencing (SRP001813)
209
285
+
Arg
GCG
[SRA]
>SRA1044761
SRR035092.335993
454 Sequencing (SRP001813)
344
420
+
Arg
GCG
[SRA]
>SRA1048063
SRR035094.101345
454 Sequencing (SRP001815)
183
107
-
Arg
GCG
[SRA]
>SRA1048648
SRR035094.216176
454 Sequencing (SRP001815)
89
13
-
Arg
GCG
[SRA]
Identical group No.371974 (1 seq.)
>SRA1043514
SRR035092.129160
454 Sequencing (SRP001813)
281
354
+
Arg
GCG
[SRA]
Identical group No.372027 (1 seq.)
>SRA1044145
SRR035092.231222
454 Sequencing (SRP001813)
250
174
-
Arg
GCG
[SRA]
Identical group No.548431 (3 seq.)
>WENV170612839
FUWD012700213
[FUWD] metagenome; unknown
507
432
-
Arg
GCG
[ENA]
¢þ
>SRA1043492
SRR035092.124822
454 Sequencing (SRP001813)
228
303
+
Arg
GCG
[SRA]
>SRA1050338
SRR035095.240080
454 Sequencing (SRP001816)
514
439
-
Arg
GCG
[SRA]
Identical group No.548609 (2 seq.)
>WENV170618664
FUWD012981039
[FUWD] metagenome; unknown
714
639
-
Arg
GCG
[ENA]
¢þ
>SRA1044268
SRR035092.250729
454 Sequencing (SRP001813)
238
313
+
Arg
GCG
[SRA]
Identical group No.562849 (1 seq.)
>SRA1043265
SRR035092.85217
454 Sequencing (SRP001813)
210
137
-
Arg
GCG
[SRA]
Identical group No.562871 (1 seq.)
>SRA1043384
SRR035092.106267
454 Sequencing (SRP001813)
140
213
+
Arg
GCG
[SRA]
Identical group No.562943 (1 seq.)
>SRA1043992
SRR035092.207476
454 Sequencing (SRP001813)
306
233
-
Arg
GCG
[SRA]
Identical group No.672605 (5 seq.)
>WENV170612662
FUWD012653549
[FUWD] metagenome; unknown
264
337
+
Arg
GCG
[ENA]
¢þ
>SRA1017949
SRR035082.218806
454 Sequencing (SRP001803)
26
99
+
Arg
GCG
[SRA]
>SRA1018105
SRR035082.241239
454 Sequencing (SRP001803)
130
203
+
Arg
GCG
[SRA]
>SRA1031835
SRR035087.496807
454 Sequencing (SRP001808)
217
144
-
Arg
GCG
[SRA]
>SRA1044517
SRR035092.292750
454 Sequencing (SRP001813)
264
337
+
Arg
GCG
[SRA]
Identical group No.711106 (5 seq.)
>WENV170612645
FUWD012650165
[FUWD] metagenome; unknown
163
235
+
Arg
GCG
[ENA]
¢þ
>SRA1018226
SRR035082.258337
454 Sequencing (SRP001803)
137
209
+
Arg
GCG
[SRA]
>SRA1041596
SRR035091.267892
454 Sequencing (SRP001812)
305
379
+
Arg
GCG
[SRA]
>SRA1044131
SRR035092.228757
454 Sequencing (SRP001813)
169
241
+
Arg
GCG
[SRA]
>SRA1047906
SRR035094.65164
454 Sequencing (SRP001815)
27
101
+
Arg
GCG
[SRA]
Identical group No.711110 (3 seq.)
>WENV170612674
FUWD012656162
[FUWD] metagenome; unknown
357
285
-
Arg
GCG
[ENA]
¢þ
>SRA1044833
SRR035092.353517
454 Sequencing (SRP001813)
357
285
-
Arg
GCG
[SRA]
>SRA1049138
SRR035095.26992
454 Sequencing (SRP001816)
453
381
-
Arg
GCG
[SRA]
Identical group No.720245 (1 seq.)
>SRA1043658
SRR035092.156152
454 Sequencing (SRP001813)
236
310
+
Arg
GCG
[SRA]
Identical group No.720308 (1 seq.)
>SRA1044349
SRR035092.264386
454 Sequencing (SRP001813)
348
422
+
Arg
GCG
[SRA]
Identical group No.720327 (1 seq.)
>SRA1044585
SRR035092.306143
454 Sequencing (SRP001813)
421
347
-
Arg
GCG
[SRA]
Identical group No.720350 (1 seq.)
>SRA1044766
SRR035092.337678
454 Sequencing (SRP001813)
370
298
-
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK