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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = TAA
HIT:
55 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60051 (1 seq.)
>SRA1043344
SRR035092.98585
454 Sequencing (SRP001813)
94
183
+
Leu
TAA
[SRA]
Identical group No.80324 (1 seq.)
>SRA1043662
SRR035092.156427
454 Sequencing (SRP001813)
274
186
-
Leu
TAA
[SRA]
Identical group No.80326 (1 seq.)
>SRA1043783
SRR035092.174724
454 Sequencing (SRP001813)
534
449
-
Leu
TAA
[SRA]
Identical group No.87043 (4 seq.)
>WENV170622540
FUWD013108273
[FUWD] metagenome; unknown
1638
1551
-
Leu
TAA
[ENA]
¢þ
>WENV170630435
FUWD013308435
[FUWD] metagenome; unknown
4713
4800
+
Leu
TAA
[ENA]
¢þ
>SRA1026655
SRR035085.251222
454 Sequencing (SRP001806)
430
343
-
Leu
TAA
[SRA]
>SRA1044111
SRR035092.225759
454 Sequencing (SRP001813)
247
334
+
Leu
TAA
[SRA]
Identical group No.90551 (4 seq.)
>WENV170623448
FUWD013151840
[FUWD] metagenome; unknown
458
371
-
Leu
TAA
[ENA]
¢þ
>WENV170631715
FUWD013362784
[FUWD] metagenome; unknown
549
636
+
Leu
TAA
[ENA]
¢þ
>SRA1029787
SRR035087.181107
454 Sequencing (SRP001808)
115
28
-
Leu
TAA
[SRA]
>SRA1044551
SRR035092.299184
454 Sequencing (SRP001813)
222
135
-
Leu
TAA
[SRA]
Identical group No.90574 (4 seq.)
>WENV170612084
FUWD012499380
[FUWD] metagenome; unknown
119
32
-
Leu
TAA
[ENA]
¢þ
>SRA1030823
SRR035087.334912
454 Sequencing (SRP001808)
119
32
-
Leu
TAA
[SRA]
>SRA1031363
SRR035087.419820
454 Sequencing (SRP001808)
119
32
-
Leu
TAA
[SRA]
>SRA1043210
SRR035092.73825
454 Sequencing (SRP001813)
12
99
+
Leu
TAA
[SRA]
Identical group No.98559 (2 seq.)
>WENV170613275
FUWD012793190
[FUWD] metagenome; unknown
582
496
-
Leu
TAA
[ENA]
¢þ
>SRA1044497
SRR035092.290309
454 Sequencing (SRP001813)
101
15
-
Leu
TAA
[SRA]
Identical group No.98598 (4 seq.)
>WENV170620898
FUWD013042400
[FUWD] metagenome; unknown
78
165
+
Leu
TAA
[ENA]
¢þ
>WENV170629054
FUWD013259430
[FUWD] metagenome; unknown
78
165
+
Leu
TAA
[ENA]
¢þ
>SRA1040782
SRR035091.149589
454 Sequencing (SRP001812)
159
72
-
Leu
TAA
[SRA]
>SRA1045133
SRR035092.417519
454 Sequencing (SRP001813)
5
92
+
Leu
TAA
[SRA]
Identical group No.100523 (1 seq.)
>SRA1043076
SRR035092.37521
454 Sequencing (SRP001813)
429
342
-
Leu
TAA
[SRA]
Identical group No.100526 (1 seq.)
>SRA1043301
SRR035092.91645
454 Sequencing (SRP001813)
221
134
-
Leu
TAA
[SRA]
Identical group No.100527 (1 seq.)
>SRA1043339
SRR035092.98197
454 Sequencing (SRP001813)
311
396
+
Leu
TAA
[SRA]
Identical group No.100535 (1 seq.)
>SRA1043984
SRR035092.206205
454 Sequencing (SRP001813)
107
20
-
Leu
TAA
[SRA]
Identical group No.100544 (1 seq.)
>SRA1044675
SRR035092.320541
454 Sequencing (SRP001813)
95
9
-
Leu
TAA
[SRA]
Identical group No.100548 (1 seq.)
>SRA1044772
SRR035092.340302
454 Sequencing (SRP001813)
246
159
-
Leu
TAA
[SRA]
Identical group No.100555 (1 seq.)
>SRA1044996
SRR035092.388843
454 Sequencing (SRP001813)
284
197
-
Leu
TAA
[SRA]
Identical group No.100558 (1 seq.)
>SRA1045094
SRR035092.409980
454 Sequencing (SRP001813)
305
221
-
Leu
TAA
[SRA]
Identical group No.112537 (4 seq.)
>WENV170613139
FUWD012782154
[FUWD] metagenome; unknown
597
681
+
Leu
TAA
[ENA]
¢þ
>SRA1026196
SRR035085.161694
454 Sequencing (SRP001806)
246
162
-
Leu
TAA
[SRA]
>SRA1042339
SRR035091.374555
454 Sequencing (SRP001812)
367
451
+
Leu
TAA
[SRA]
>SRA1043763
SRR035092.171700
454 Sequencing (SRP001813)
131
215
+
Leu
TAA
[SRA]
Identical group No.112573 (9 seq.)
>WENV170624527
FUWD013182687
[FUWD] metagenome; unknown
31627
31544
-
Leu
TAA
[ENA]
¢þ
>WENV170632813
FUWD013387402
[FUWD] metagenome; unknown
31627
31544
-
Leu
TAA
[ENA]
¢þ
>SRA1034654
SRR035089.145997
454 Sequencing (SRP001810)
95
12
-
Leu
TAA
[SRA]
>SRA1034739
SRR035089.163740
454 Sequencing (SRP001810)
254
171
-
Leu
TAA
[SRA]
>SRA1035019
SRR035089.220217
454 Sequencing (SRP001810)
254
171
-
Leu
TAA
[SRA]
>SRA1044125
SRR035092.227865
454 Sequencing (SRP001813)
190
107
-
Leu
TAA
[SRA]
>SRA1047946
SRR035094.72878
454 Sequencing (SRP001815)
193
276
+
Leu
TAA
[SRA]
>SRA1050269
SRR035095.226114
454 Sequencing (SRP001816)
176
93
-
Leu
TAA
[SRA]
>SRA1050617
SRR035095.308058
454 Sequencing (SRP001816)
86
169
+
Leu
TAA
[SRA]
Identical group No.112630 (5 seq.)
>WENV170599742
FUWD010089989
[FUWD] metagenome; unknown
323
409
+
Leu
TAA
[ENA]
¢þ
>WENV170626784
FUWD013229466
[FUWD] metagenome; unknown
8728
8812
+
Leu
TAA
[ENA]
¢þ
>SRA1031248
SRR035087.399575
454 Sequencing (SRP001808)
155
241
+
Leu
TAA
[SRA]
>SRA1036205
SRR035089.471261
454 Sequencing (SRP001810)
401
315
-
Leu
TAA
[SRA]
>SRA1043330
SRR035092.97490
454 Sequencing (SRP001813)
377
293
-
Leu
TAA
[SRA]
Identical group No.118312 (3 seq.)
>WENV170612001
FUWD012479674
[FUWD] metagenome; unknown
192
106
-
Leu
TAA
[ENA]
¢þ
>SRA1029802
SRR035087.183852
454 Sequencing (SRP001808)
246
160
-
Leu
TAA
[SRA]
>SRA1043445
SRR035092.115909
454 Sequencing (SRP001813)
339
425
+
Leu
TAA
[SRA]
Identical group No.131700 (5 seq.)
>WENV170612477
FUWD012620206
[FUWD] metagenome; unknown
22
107
+
Leu
TAA
[ENA]
¢þ
>SRA1040307
SRR035091.75685
454 Sequencing (SRP001812)
128
213
+
Leu
TAA
[SRA]
>SRA1041425
SRR035091.240050
454 Sequencing (SRP001812)
128
213
+
Leu
TAA
[SRA]
>SRA1041889
SRR035091.310982
454 Sequencing (SRP001812)
126
41
-
Leu
TAA
[SRA]
>SRA1045097
SRR035092.410062
454 Sequencing (SRP001813)
400
315
-
Leu
TAA
[SRA]
Identical group No.131816 (4 seq.)
>WENV170623240
FUWD013142819
[FUWD] metagenome; unknown
488
404
-
Leu
TAA
[ENA]
¢þ
>WENV170631497
FUWD013355018
[FUWD] metagenome; unknown
488
404
-
Leu
TAA
[ENA]
¢þ
>SRA1017967
SRR035082.223022
454 Sequencing (SRP001803)
458
374
-
Leu
TAA
[SRA]
>SRA1044302
SRR035092.256576
454 Sequencing (SRP001813)
489
405
-
Leu
TAA
[SRA]
Identical group No.131836 (4 seq.)
>WENV170625936
FUWD013209829
[FUWD] metagenome; unknown
3760
3846
+
Leu
TAA
[ENA]
¢þ
>WENV170634150
FUWD013411312
[FUWD] metagenome; unknown
3760
3846
+
Leu
TAA
[ENA]
¢þ
>SRA1040750
SRR035091.143159
454 Sequencing (SRP001812)
458
544
+
Leu
TAA
[SRA]
>SRA1043777
SRR035092.173862
454 Sequencing (SRP001813)
342
256
-
Leu
TAA
[SRA]
Identical group No.134797 (1 seq.)
>SRA1043045
SRR035092.28911
454 Sequencing (SRP001813)
98
184
+
Leu
TAA
[SRA]
Identical group No.134798 (1 seq.)
>SRA1043055
SRR035092.31166
454 Sequencing (SRP001813)
106
190
+
Leu
TAA
[SRA]
Identical group No.134813 (1 seq.)
>SRA1043691
SRR035092.161836
454 Sequencing (SRP001813)
430
344
-
Leu
TAA
[SRA]
Identical group No.134816 (1 seq.)
>SRA1043773
SRR035092.172856
454 Sequencing (SRP001813)
609
524
-
Leu
TAA
[SRA]
Identical group No.134827 (1 seq.)
>SRA1044273
SRR035092.251290
454 Sequencing (SRP001813)
377
291
-
Leu
TAA
[SRA]
Identical group No.134829 (1 seq.)
>SRA1044330
SRR035092.261270
454 Sequencing (SRP001813)
256
342
+
Leu
TAA
[SRA]
Identical group No.134830 (1 seq.)
>SRA1044338
SRR035092.262286
454 Sequencing (SRP001813)
344
259
-
Leu
TAA
[SRA]
Identical group No.134843 (1 seq.)
>SRA1044733
SRR035092.330813
454 Sequencing (SRP001813)
183
269
+
Leu
TAA
[SRA]
Identical group No.134844 (1 seq.)
>SRA1044781
SRR035092.341997
454 Sequencing (SRP001813)
308
222
-
Leu
TAA
[SRA]
Identical group No.134845 (1 seq.)
>SRA1044813
SRR035092.349883
454 Sequencing (SRP001813)
193
107
-
Leu
TAA
[SRA]
Identical group No.134846 (1 seq.)
>SRA1044830
SRR035092.353237
454 Sequencing (SRP001813)
491
406
-
Leu
TAA
[SRA]
Identical group No.134852 (1 seq.)
>SRA1045085
SRR035092.407439
454 Sequencing (SRP001813)
423
339
-
Leu
TAA
[SRA]
Identical group No.134884 (1 seq.)
>SRA1044627
SRR035092.312716
454 Sequencing (SRP001813)
110
25
-
Leu
TAA
[SRA]
Identical group No.134885 (1 seq.)
>SRA1044881
SRR035092.365187
454 Sequencing (SRP001813)
71
155
+
Leu
TAA
[SRA]
Identical group No.167751 (1 seq.)
>SRA1043723
SRR035092.165719
454 Sequencing (SRP001813)
519
434
-
Leu
TAA
[SRA]
Identical group No.167760 (1 seq.)
>SRA1044319
SRR035092.258551
454 Sequencing (SRP001813)
175
259
+
Leu
TAA
[SRA]
Identical group No.167763 (1 seq.)
>SRA1044663
SRR035092.319531
454 Sequencing (SRP001813)
193
277
+
Leu
TAA
[SRA]
Identical group No.167769 (1 seq.)
>SRA1045107
SRR035092.411534
454 Sequencing (SRP001813)
64
147
+
Leu
TAA
[SRA]
Identical group No.180249 (4 seq.)
>WENV170622487
FUWD013106980
[FUWD] metagenome; unknown
1185
1101
-
Leu
TAA
[ENA]
¢þ
>WENV170630711
FUWD013321327
[FUWD] metagenome; unknown
1185
1101
-
Leu
TAA
[ENA]
¢þ
>SRA1035759
SRR035089.370090
454 Sequencing (SRP001810)
189
273
+
Leu
TAA
[SRA]
>SRA1043414
SRR035092.110466
454 Sequencing (SRP001813)
387
303
-
Leu
TAA
[SRA]
Identical group No.180250 (11 seq.)
>WENV170617916
FUWD012943521
[FUWD] metagenome; unknown
212
129
-
Leu
TAA
[ENA]
¢þ
>WENV170626577
FUWD013225820
[FUWD] metagenome; unknown
410
494
+
Leu
TAA
[ENA]
¢þ
>WENV170626702
FUWD013228986
[FUWD] metagenome; unknown
210
293
+
Leu
TAA
[ENA]
¢þ
>SRA1017842
SRR035082.205560
454 Sequencing (SRP001803)
144
228
+
Leu
TAA
[SRA]
>SRA1018245
SRR035082.261628
454 Sequencing (SRP001803)
33
117
+
Leu
TAA
[SRA]
>SRA1019220
SRR035082.420261
454 Sequencing (SRP001803)
102
19
-
Leu
TAA
[SRA]
>SRA1031330
SRR035087.413588
454 Sequencing (SRP001808)
165
249
+
Leu
TAA
[SRA]
>SRA1035765
SRR035089.372103
454 Sequencing (SRP001810)
251
168
-
Leu
TAA
[SRA]
>SRA1041509
SRR035091.252859
454 Sequencing (SRP001812)
311
228
-
Leu
TAA
[SRA]
>SRA1044404
SRR035092.274740
454 Sequencing (SRP001813)
109
25
-
Leu
TAA
[SRA]
>SRA1046852
SRR035093.398638
454 Sequencing (SRP001814)
338
421
+
Leu
TAA
[SRA]
Identical group No.201074 (1 seq.)
>SRA1043190
SRR035092.67183
454 Sequencing (SRP001813)
166
82
-
Leu
TAA
[SRA]
Identical group No.201080 (1 seq.)
>SRA1043524
SRR035092.132075
454 Sequencing (SRP001813)
491
408
-
Leu
TAA
[SRA]
Identical group No.201082 (1 seq.)
>SRA1043634
SRR035092.152330
454 Sequencing (SRP001813)
83
-1
-
Leu
TAA
[SRA]
Identical group No.201089 (1 seq.)
>SRA1044142
SRR035092.230630
454 Sequencing (SRP001813)
216
133
-
Leu
TAA
[SRA]
Identical group No.201093 (1 seq.)
>SRA1044436
SRR035092.279453
454 Sequencing (SRP001813)
176
94
-
Leu
TAA
[SRA]
Identical group No.201094 (1 seq.)
>SRA1044507
SRR035092.290730
454 Sequencing (SRP001813)
151
232
+
Leu
TAA
[SRA]
Identical group No.237684 (1 seq.)
>SRA1043325
SRR035092.96889
454 Sequencing (SRP001813)
301
379
+
Leu
TAA
[SRA]
Identical group No.237703 (1 seq.)
>SRA1045126
SRR035092.416411
454 Sequencing (SRP001813)
352
429
+
Leu
TAA
[SRA]
Identical group No.254153 (2 seq.)
>WENV170612401
FUWD012603362
[FUWD] metagenome; unknown
154
228
+
Leu
TAA
[ENA]
¢þ
>SRA1043244
SRR035092.80379
454 Sequencing (SRP001813)
158
232
+
Leu
TAA
[SRA]
Identical group No.371989 (1 seq.)
>SRA1043695
SRR035092.161946
454 Sequencing (SRP001813)
403
328
-
Leu
TAA
[SRA]
Identical group No.372060 (1 seq.)
>SRA1044491
SRR035092.288258
454 Sequencing (SRP001813)
330
403
+
Leu
TAA
[SRA]
Identical group No.563023 (1 seq.)
>SRA1044800
SRR035092.347487
454 Sequencing (SRP001813)
308
233
-
Leu
TAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK