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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = TAG
HIT:
50 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.98494 (4 seq.)
>WENV170608173
FUWD010898999
[FUWD] metagenome; unknown
50
134
+
Leu
TAG
[ENA]
¢þ
>SRA1043476
SRR035092.121976
454 Sequencing (SRP001813)
432
516
+
Leu
TAG
[SRA]
>SRA1043939
SRR035092.198693
454 Sequencing (SRP001813)
30
114
+
Leu
TAG
[SRA]
>SRA1044472
SRR035092.285539
454 Sequencing (SRP001813)
278
194
-
Leu
TAG
[SRA]
Identical group No.100554 (1 seq.)
>SRA1044957
SRR035092.380738
454 Sequencing (SRP001813)
323
407
+
Leu
TAG
[SRA]
Identical group No.112531 (4 seq.)
>WENV170612647
FUWD012650262
[FUWD] metagenome; unknown
241
155
-
Leu
TAG
[ENA]
¢þ
>SRA1026051
SRR035085.132335
454 Sequencing (SRP001806)
220
134
-
Leu
TAG
[SRA]
>SRA1029695
SRR035087.165971
454 Sequencing (SRP001808)
348
262
-
Leu
TAG
[SRA]
>SRA1044141
SRR035092.230527
454 Sequencing (SRP001813)
241
155
-
Leu
TAG
[SRA]
Identical group No.112580 (3 seq.)
>WENV170626895
FUWD013229998
[FUWD] metagenome; unknown
3178
3262
+
Leu
TAG
[ENA]
¢þ
>SRA1034735
SRR035089.163202
454 Sequencing (SRP001810)
91
175
+
Leu
TAG
[SRA]
>SRA1043062
SRR035092.33378
454 Sequencing (SRP001813)
204
288
+
Leu
TAG
[SRA]
Identical group No.131699 (3 seq.)
>WENV170612463
FUWD012616687
[FUWD] metagenome; unknown
158
244
+
Leu
TAG
[ENA]
¢þ
>SRA1041123
SRR035091.200448
454 Sequencing (SRP001812)
288
374
+
Leu
TAG
[SRA]
>SRA1044073
SRR035092.219544
454 Sequencing (SRP001813)
379
293
-
Leu
TAG
[SRA]
Identical group No.131709 (3 seq.)
>WENV170612651
FUWD012650610
[FUWD] metagenome; unknown
447
362
-
Leu
TAG
[ENA]
¢þ
>SRA1042232
SRR035091.359627
454 Sequencing (SRP001812)
157
242
+
Leu
TAG
[SRA]
>SRA1044176
SRR035092.236673
454 Sequencing (SRP001813)
455
370
-
Leu
TAG
[SRA]
Identical group No.131712 (2 seq.)
>WENV170612689
FUWD012658289
[FUWD] metagenome; unknown
225
308
+
Leu
TAG
[ENA]
¢þ
>SRA1045118
SRR035092.414858
454 Sequencing (SRP001813)
225
308
+
Leu
TAG
[SRA]
Identical group No.131805 (4 seq.)
>WENV170622839
FUWD013123197
[FUWD] metagenome; unknown
1382
1296
-
Leu
TAG
[ENA]
¢þ
>WENV170631057
FUWD013336755
[FUWD] metagenome; unknown
1382
1296
-
Leu
TAG
[ENA]
¢þ
>SRA1018484
SRR035082.298768
454 Sequencing (SRP001803)
377
291
-
Leu
TAG
[SRA]
>SRA1043931
SRR035092.196509
454 Sequencing (SRP001813)
379
293
-
Leu
TAG
[SRA]
Identical group No.131847 (13 seq.)
>WENV170627201
FUWD013231996
[FUWD] metagenome; unknown
1789
1704
-
Leu
TAG
[ENA]
¢þ
>WENV170632588
FUWD013384757
[FUWD] metagenome; unknown
1789
1704
-
Leu
TAG
[ENA]
¢þ
>SRA1021330
SRR035083.243374
454 Sequencing (SRP001804)
232
317
+
Leu
TAG
[SRA]
>SRA1032525
SRR035088.38294
454 Sequencing (SRP001809)
29
114
+
Leu
TAG
[SRA]
>SRA1042745
SRR035091.439336
454 Sequencing (SRP001812)
106
191
+
Leu
TAG
[SRA]
>SRA1042801
SRR035091.449133
454 Sequencing (SRP001812)
49
134
+
Leu
TAG
[SRA]
>SRA1042911
SRR035091.466299
454 Sequencing (SRP001812)
69
154
+
Leu
TAG
[SRA]
>SRA1043905
SRR035092.192247
454 Sequencing (SRP001813)
40
125
+
Leu
TAG
[SRA]
>SRA1044807
SRR035092.348371
454 Sequencing (SRP001813)
327
242
-
Leu
TAG
[SRA]
>SRA1047830
SRR035094.49965
454 Sequencing (SRP001815)
169
254
+
Leu
TAG
[SRA]
>SRA1049553
SRR035095.95045
454 Sequencing (SRP001816)
489
404
-
Leu
TAG
[SRA]
>SRA1049617
SRR035095.105209
454 Sequencing (SRP001816)
135
50
-
Leu
TAG
[SRA]
>SRA1050424
SRR035095.259770
454 Sequencing (SRP001816)
313
228
-
Leu
TAG
[SRA]
Identical group No.134795 (1 seq.)
>SRA1042976
SRR035092.11128
454 Sequencing (SRP001813)
203
120
-
Leu
TAG
[SRA]
Identical group No.134807 (1 seq.)
>SRA1043436
SRR035092.115072
454 Sequencing (SRP001813)
248
334
+
Leu
TAG
[SRA]
Identical group No.134823 (1 seq.)
>SRA1044158
SRR035092.232983
454 Sequencing (SRP001813)
86
3
-
Leu
TAG
[SRA]
Identical group No.134834 (1 seq.)
>SRA1044471
SRR035092.285521
454 Sequencing (SRP001813)
292
376
+
Leu
TAG
[SRA]
Identical group No.134837 (1 seq.)
>SRA1044588
SRR035092.306866
454 Sequencing (SRP001813)
272
186
-
Leu
TAG
[SRA]
Identical group No.134841 (1 seq.)
>SRA1044698
SRR035092.323753
454 Sequencing (SRP001813)
124
210
+
Leu
TAG
[SRA]
Identical group No.165736 (3 seq.)
>WENV170612191
FUWD012528443
[FUWD] metagenome; unknown
120
205
+
Leu
TAG
[ENA]
¢þ
>SRA1033314
SRR035088.222452
454 Sequencing (SRP001809)
213
298
+
Leu
TAG
[SRA]
>SRA1043111
SRR035092.49797
454 Sequencing (SRP001813)
120
205
+
Leu
TAG
[SRA]
Identical group No.167747 (1 seq.)
>SRA1043386
SRR035092.106318
454 Sequencing (SRP001813)
124
209
+
Leu
TAG
[SRA]
Identical group No.167762 (1 seq.)
>SRA1044558
SRR035092.301300
454 Sequencing (SRP001813)
55
139
+
Leu
TAG
[SRA]
Identical group No.167800 (1 seq.)
>SRA1044177
SRR035092.236760
454 Sequencing (SRP001813)
293
208
-
Leu
TAG
[SRA]
Identical group No.180205 (7 seq.)
>WENV170623245
FUWD013142859
[FUWD] metagenome; unknown
1065
981
-
Leu
TAG
[ENA]
¢þ
>WENV170631502
FUWD013355056
[FUWD] metagenome; unknown
1065
981
-
Leu
TAG
[ENA]
¢þ
>SRA1026333
SRR035085.187229
454 Sequencing (SRP001806)
266
350
+
Leu
TAG
[SRA]
>SRA1026629
SRR035085.245395
454 Sequencing (SRP001806)
266
350
+
Leu
TAG
[SRA]
>SRA1029034
SRR035087.62399
454 Sequencing (SRP001808)
251
335
+
Leu
TAG
[SRA]
>SRA1035651
SRR035089.349652
454 Sequencing (SRP001810)
14
98
+
Leu
TAG
[SRA]
>SRA1043214
SRR035092.74271
454 Sequencing (SRP001813)
22
106
+
Leu
TAG
[SRA]
Identical group No.186080 (3 seq.)
>WENV170612025
FUWD012484912
[FUWD] metagenome; unknown
123
39
-
Leu
TAG
[ENA]
¢þ
>SRA1030198
SRR035087.240963
454 Sequencing (SRP001808)
123
39
-
Leu
TAG
[SRA]
>SRA1044526
SRR035092.294209
454 Sequencing (SRP001813)
343
259
-
Leu
TAG
[SRA]
Identical group No.186133 (2 seq.)
>SRA1043673
SRR035092.157770
454 Sequencing (SRP001813)
196
112
-
Leu
TAG
[SRA]
>SRA1045798
SRR035093.172325
454 Sequencing (SRP001814)
174
90
-
Leu
TAG
[SRA]
Identical group No.198037 (3 seq.)
>WENV170602340
FUWD010228928
[FUWD] metagenome; unknown
433
349
-
Leu
TAG
[ENA]
¢þ
>SRA1043655
SRR035092.155552
454 Sequencing (SRP001813)
177
261
+
Leu
TAG
[SRA]
>SRA1044366
SRR035092.266450
454 Sequencing (SRP001813)
433
349
-
Leu
TAG
[SRA]
Identical group No.198193 (3 seq.)
>WENV170612584
FUWD012640493
[FUWD] metagenome; unknown
1
83
+
Leu
TAG
[ENA]
¢þ
>SRA1043229
SRR035092.77475
454 Sequencing (SRP001813)
291
375
+
Leu
TAG
[SRA]
>SRA1044015
SRR035092.209743
454 Sequencing (SRP001813)
293
377
+
Leu
TAG
[SRA]
Identical group No.198194 (4 seq.)
>WENV170612668
FUWD012654587
[FUWD] metagenome; unknown
261
179
-
Leu
TAG
[ENA]
¢þ
>WENV170613104
FUWD012780438
[FUWD] metagenome; unknown
531
447
-
Leu
TAG
[ENA]
¢þ
>SRA1044639
SRR035092.315173
454 Sequencing (SRP001813)
261
179
-
Leu
TAG
[SRA]
>SRA1049894
SRR035095.155684
454 Sequencing (SRP001816)
152
234
+
Leu
TAG
[SRA]
Identical group No.198268 (5 seq.)
>WENV170621632
FUWD013066713
[FUWD] metagenome; unknown
3080
3164
+
Leu
TAG
[ENA]
¢þ
>WENV170629821
FUWD013282672
[FUWD] metagenome; unknown
3080
3164
+
Leu
TAG
[ENA]
¢þ
>SRA1043563
SRR035092.138505
454 Sequencing (SRP001813)
355
271
-
Leu
TAG
[SRA]
>SRA1043809
SRR035092.179091
454 Sequencing (SRP001813)
378
462
+
Leu
TAG
[SRA]
>SRA1048383
SRR035094.161915
454 Sequencing (SRP001815)
324
240
-
Leu
TAG
[SRA]
Identical group No.198286 (3 seq.)
>WENV170622794
FUWD013121141
[FUWD] metagenome; unknown
1499
1417
-
Leu
TAG
[ENA]
¢þ
>WENV170631007
FUWD013334893
[FUWD] metagenome; unknown
1499
1417
-
Leu
TAG
[ENA]
¢þ
>SRA1044421
SRR035092.277058
454 Sequencing (SRP001813)
532
450
-
Leu
TAG
[SRA]
Identical group No.198318 (3 seq.)
>WENV170627438
FUWD013232788
[FUWD] metagenome; unknown
168360
168444
+
Leu
TAG
[ENA]
¢þ
>SRA1043531
SRR035092.133548
454 Sequencing (SRP001813)
287
371
+
Leu
TAG
[SRA]
>SRA1053800
SRR035098.499257
454 Sequencing (SRP001819)
132
216
+
Leu
TAG
[SRA]
Identical group No.201076 (1 seq.)
>SRA1043298
SRR035092.91503
454 Sequencing (SRP001813)
24
108
+
Leu
TAG
[SRA]
Identical group No.201077 (1 seq.)
>SRA1043433
SRR035092.113914
454 Sequencing (SRP001813)
88
172
+
Leu
TAG
[SRA]
Identical group No.201085 (2 seq.)
>SRA1037356
SRR035090.121277
454 Sequencing (SRP001811)
116
32
-
Leu
TAG
[SRA]
>SRA1043953
SRR035092.200345
454 Sequencing (SRP001813)
365
281
-
Leu
TAG
[SRA]
Identical group No.201087 (1 seq.)
>SRA1044028
SRR035092.211466
454 Sequencing (SRP001813)
236
320
+
Leu
TAG
[SRA]
Identical group No.201088 (1 seq.)
>SRA1044060
SRR035092.216152
454 Sequencing (SRP001813)
149
65
-
Leu
TAG
[SRA]
Identical group No.201090 (1 seq.)
>SRA1044373
SRR035092.268818
454 Sequencing (SRP001813)
126
42
-
Leu
TAG
[SRA]
Identical group No.201097 (1 seq.)
>SRA1044690
SRR035092.322980
454 Sequencing (SRP001813)
357
273
-
Leu
TAG
[SRA]
Identical group No.201099 (1 seq.)
>SRA1044856
SRR035092.359470
454 Sequencing (SRP001813)
47
131
+
Leu
TAG
[SRA]
Identical group No.223676 (1 seq.)
>SRA1043732
SRR035092.166937
454 Sequencing (SRP001813)
278
360
+
Leu
TAG
[SRA]
Identical group No.223682 (1 seq.)
>SRA1043807
SRR035092.179055
454 Sequencing (SRP001813)
10
90
+
Leu
TAG
[SRA]
Identical group No.233770 (1 seq.)
>SRA1044017
SRR035092.210381
454 Sequencing (SRP001813)
137
56
-
Leu
TAG
[SRA]
Identical group No.237698 (1 seq.)
>SRA1044847
SRR035092.355955
454 Sequencing (SRP001813)
147
71
-
Leu
TAG
[SRA]
Identical group No.256249 (1 seq.)
>SRA1043759
SRR035092.171470
454 Sequencing (SRP001813)
333
410
+
Leu
TAG
[SRA]
Identical group No.256293 (1 seq.)
>SRA1044924
SRR035092.374087
454 Sequencing (SRP001813)
174
100
-
Leu
TAG
[SRA]
Identical group No.256339 (1 seq.)
>SRA1045125
SRR035092.416411
454 Sequencing (SRP001813)
264
340
+
Leu
TAG
[SRA]
Identical group No.300685 (3 seq.)
>WENV170607956
FUWD010874196
[FUWD] metagenome; unknown
234
161
-
Leu
TAG
[ENA]
¢þ
>SRA1031478
SRR035087.437091
454 Sequencing (SRP001808)
177
104
-
Leu
TAG
[SRA]
>SRA1044514
SRR035092.292680
454 Sequencing (SRP001813)
238
165
-
Leu
TAG
[SRA]
Identical group No.372031 (1 seq.)
>SRA1044167
SRR035092.234667
454 Sequencing (SRP001813)
373
449
+
Leu
TAG
[SRA]
Identical group No.372043 (1 seq.)
>SRA1044315
SRR035092.257680
454 Sequencing (SRP001813)
93
17
-
Leu
TAG
[SRA]
Identical group No.372057 (1 seq.)
>SRA1044437
SRR035092.279453
454 Sequencing (SRP001813)
92
16
-
Leu
TAG
[SRA]
Identical group No.372064 (1 seq.)
>SRA1044566
SRR035092.301956
454 Sequencing (SRP001813)
487
562
+
Leu
TAG
[SRA]
Identical group No.372118 (1 seq.)
>SRA1045103
SRR035092.410645
454 Sequencing (SRP001813)
84
8
-
Leu
TAG
[SRA]
Identical group No.562963 (1 seq.)
>SRA1044181
SRR035092.237088
454 Sequencing (SRP001813)
182
107
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK