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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = TCG
HIT:
26 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254154 (3 seq.)
>WENV170612413
FUWD012605426
[FUWD] metagenome; unknown
183
106
-
Arg
TCG
[ENA]
¢þ
>SRA1040324
SRR035091.78844
454 Sequencing (SRP001812)
335
258
-
Arg
TCG
[SRA]
>SRA1043848
SRR035092.185320
454 Sequencing (SRP001813)
183
106
-
Arg
TCG
[SRA]
Identical group No.256258 (1 seq.)
>SRA1044029
SRR035092.211547
454 Sequencing (SRP001813)
389
315
-
Arg
TCG
[SRA]
Identical group No.272300 (7 seq.)
>WENV170621492
FUWD013061040
[FUWD] metagenome; unknown
1638
1564
-
Arg
TCG
[ENA]
¢þ
>WENV170629674
FUWD013277251
[FUWD] metagenome; unknown
1638
1564
-
Arg
TCG
[ENA]
¢þ
>SRA1025744
SRR035085.74740
454 Sequencing (SRP001806)
311
237
-
Arg
TCG
[SRA]
>SRA1025947
SRR035085.114996
454 Sequencing (SRP001806)
335
261
-
Arg
TCG
[SRA]
>SRA1042195
SRR035091.352397
454 Sequencing (SRP001812)
157
83
-
Arg
TCG
[SRA]
>SRA1042317
SRR035091.371473
454 Sequencing (SRP001812)
402
476
+
Arg
TCG
[SRA]
>SRA1044190
SRR035092.238943
454 Sequencing (SRP001813)
162
236
+
Arg
TCG
[SRA]
Identical group No.357801 (2 seq.)
>WENV170605203
FUWD010457849
[FUWD] metagenome; unknown
258
182
-
Arg
TCG
[ENA]
¢þ
>SRA1044459
SRR035092.283398
454 Sequencing (SRP001813)
244
168
-
Arg
TCG
[SRA]
Identical group No.358823 (3 seq.)
>WENV170623338
FUWD013146011
[FUWD] metagenome; unknown
734
810
+
Arg
TCG
[ENA]
¢þ
>WENV170631601
FUWD013357945
[FUWD] metagenome; unknown
683
607
-
Arg
TCG
[ENA]
¢þ
>SRA1044147
SRR035092.231643
454 Sequencing (SRP001813)
278
354
+
Arg
TCG
[SRA]
Identical group No.372015 (1 seq.)
>SRA1043971
SRR035092.203754
454 Sequencing (SRP001813)
265
341
+
Arg
TCG
[SRA]
Identical group No.372034 (1 seq.)
>SRA1044240
SRR035092.246875
454 Sequencing (SRP001813)
67
143
+
Arg
TCG
[SRA]
Identical group No.372107 (1 seq.)
>SRA1045022
SRR035092.394265
454 Sequencing (SRP001813)
6
81
+
Arg
TCG
[SRA]
Identical group No.372114 (2 seq.)
>SRA1041186
SRR035091.210720
454 Sequencing (SRP001812)
270
196
-
Arg
TCG
[SRA]
>SRA1045061
SRR035092.403110
454 Sequencing (SRP001813)
303
229
-
Arg
TCG
[SRA]
Identical group No.562843 (1 seq.)
>SRA1043219
SRR035092.75348
454 Sequencing (SRP001813)
142
215
+
Arg
TCG
[SRA]
Identical group No.562892 (1 seq.)
>SRA1043537
SRR035092.134307
454 Sequencing (SRP001813)
285
210
-
Arg
TCG
[SRA]
Identical group No.562946 (1 seq.)
>SRA1044019
SRR035092.210542
454 Sequencing (SRP001813)
470
544
+
Arg
TCG
[SRA]
Identical group No.563007 (1 seq.)
>SRA1044661
SRR035092.318319
454 Sequencing (SRP001813)
120
195
+
Arg
TCG
[SRA]
Identical group No.654644 (3 seq.)
>SRA1036613
SRR035089.562762
454 Sequencing (SRP001810)
326
252
-
Arg
TCG
[SRA]
>SRA1044405
SRR035092.274748
454 Sequencing (SRP001813)
46
120
+
Arg
TCG
[SRA]
>SRA1048633
SRR035094.213243
454 Sequencing (SRP001815)
358
432
+
Arg
TCG
[SRA]
Identical group No.672490 (7 seq.)
>WENV170620937
FUWD013043832
[FUWD] metagenome; unknown
4243
4169
-
Arg
TCG
[ENA]
¢þ
>WENV170629093
FUWD013260810
[FUWD] metagenome; unknown
4243
4169
-
Arg
TCG
[ENA]
¢þ
>SRA1030862
SRR035087.341141
454 Sequencing (SRP001808)
321
395
+
Arg
TCG
[SRA]
>SRA1032069
SRR035087.544670
454 Sequencing (SRP001808)
280
206
-
Arg
TCG
[SRA]
>SRA1032188
SRR035087.572145
454 Sequencing (SRP001808)
303
377
+
Arg
TCG
[SRA]
>SRA1043744
SRR035092.168360
454 Sequencing (SRP001813)
86
158
+
Arg
TCG
[SRA]
>SRA1044133
SRR035092.229364
454 Sequencing (SRP001813)
87
159
+
Arg
TCG
[SRA]
Identical group No.710592 (3 seq.)
>WENV170603285
FUWD010298744
[FUWD] metagenome; unknown
807
879
+
Arg
TCG
[ENA]
¢þ
>SRA1045026
SRR035092.394809
454 Sequencing (SRP001813)
95
23
-
Arg
TCG
[SRA]
>SRA1048432
SRR035094.172619
454 Sequencing (SRP001815)
326
252
-
Arg
TCG
[SRA]
Identical group No.711081 (3 seq.)
>WENV170612456
FUWD012614452
[FUWD] metagenome; unknown
78
4
-
Arg
TCG
[ENA]
¢þ
>SRA1040961
SRR035091.175129
454 Sequencing (SRP001812)
107
33
-
Arg
TCG
[SRA]
>SRA1044691
SRR035092.323107
454 Sequencing (SRP001813)
154
228
+
Arg
TCG
[SRA]
Identical group No.711094 (2 seq.)
>WENV170612583
FUWD012640356
[FUWD] metagenome; unknown
123
49
-
Arg
TCG
[ENA]
¢þ
>SRA1043221
SRR035092.75418
454 Sequencing (SRP001813)
391
317
-
Arg
TCG
[SRA]
Identical group No.711114 (5 seq.)
>WENV170612685
FUWD012657873
[FUWD] metagenome; unknown
295
367
+
Arg
TCG
[ENA]
¢þ
>SRA1042155
SRR035091.347302
454 Sequencing (SRP001812)
82
10
-
Arg
TCG
[SRA]
>SRA1045050
SRR035092.400076
454 Sequencing (SRP001813)
297
369
+
Arg
TCG
[SRA]
>SRA1047849
SRR035094.54558
454 Sequencing (SRP001815)
55
127
+
Arg
TCG
[SRA]
>SRA1048076
SRR035094.104130
454 Sequencing (SRP001815)
55
127
+
Arg
TCG
[SRA]
Identical group No.711212 (2 seq.)
>WENV170613485
FUWD012808224
[FUWD] metagenome; unknown
220
147
-
Arg
TCG
[ENA]
¢þ
>SRA1044018
SRR035092.210386
454 Sequencing (SRP001813)
179
108
-
Arg
TCG
[SRA]
Identical group No.711357 (4 seq.)
>WENV170621634
FUWD013066713
[FUWD] metagenome; unknown
2937
2865
-
Arg
TCG
[ENA]
¢þ
>WENV170629823
FUWD013282672
[FUWD] metagenome; unknown
2937
2865
-
Arg
TCG
[ENA]
¢þ
>SRA1043811
SRR035092.179091
454 Sequencing (SRP001813)
235
163
-
Arg
TCG
[SRA]
>SRA1048382
SRR035094.161915
454 Sequencing (SRP001815)
466
538
+
Arg
TCG
[SRA]
Identical group No.720214 (1 seq.)
>SRA1043286
SRR035092.89493
454 Sequencing (SRP001813)
461
390
-
Arg
TCG
[SRA]
Identical group No.720310 (1 seq.)
>SRA1044408
SRR035092.275344
454 Sequencing (SRP001813)
1
75
+
Arg
TCG
[SRA]
Identical group No.720339 (1 seq.)
>SRA1044695
SRR035092.323646
454 Sequencing (SRP001813)
205
279
+
Arg
TCG
[SRA]
Identical group No.720469 (1 seq.)
>SRA1044806
SRR035092.348268
454 Sequencing (SRP001813)
189
118
-
Arg
TCG
[SRA]
Identical group No.809478 (1 seq.)
>SRA1043512
SRR035092.129036
454 Sequencing (SRP001813)
322
249
-
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK