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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = TGA
HIT:
35 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8265 (6 seq.)
>WENV170626453
FUWD013222906
[FUWD] metagenome; unknown
441
351
-
Ser
TGA
[ENA]
¢þ
>SRA1023132
SRR035084.14522
454 Sequencing (SRP001805)
420
330
-
Ser
TGA
[SRA]
>SRA1023411
SRR035084.92956
454 Sequencing (SRP001805)
423
333
-
Ser
TGA
[SRA]
>SRA1033922
SRR035088.409426
454 Sequencing (SRP001809)
145
55
-
Ser
TGA
[SRA]
>SRA1034704
SRR035089.156117
454 Sequencing (SRP001810)
160
70
-
Ser
TGA
[SRA]
>SRA1043942
SRR035092.199362
454 Sequencing (SRP001813)
204
114
-
Ser
TGA
[SRA]
Identical group No.8756 (3 seq.)
>WENV170612083
FUWD012498981
[FUWD] metagenome; unknown
193
101
-
Ser
TGA
[ENA]
¢þ
>SRA1031336
SRR035087.414606
454 Sequencing (SRP001808)
193
101
-
Ser
TGA
[SRA]
>SRA1043006
SRR035092.19696
454 Sequencing (SRP001813)
208
300
+
Ser
TGA
[SRA]
Identical group No.21416 (6 seq.)
>WENV170607899
FUWD010869408
[FUWD] metagenome; unknown
374
465
+
Ser
TGA
[ENA]
¢þ
>SRA1029297
SRR035087.104545
454 Sequencing (SRP001808)
11
102
+
Ser
TGA
[SRA]
>SRA1029386
SRR035087.119820
454 Sequencing (SRP001808)
295
204
-
Ser
TGA
[SRA]
>SRA1044477
SRR035092.286144
454 Sequencing (SRP001813)
308
399
+
Ser
TGA
[SRA]
>SRA1048160
SRR035094.120113
454 Sequencing (SRP001815)
122
212
+
Ser
TGA
[SRA]
>SRA1048831
SRR035094.259234
454 Sequencing (SRP001815)
130
39
-
Ser
TGA
[SRA]
Identical group No.25442 (1 seq.)
>SRA1042993
SRR035092.17086
454 Sequencing (SRP001813)
175
84
-
Ser
TGA
[SRA]
Identical group No.25446 (1 seq.)
>SRA1044435
SRR035092.279453
454 Sequencing (SRP001813)
352
261
-
Ser
TGA
[SRA]
Identical group No.38964 (1 seq.)
>SRA1044320
SRR035092.259144
454 Sequencing (SRP001813)
58
148
+
Ser
TGA
[SRA]
Identical group No.45881 (4 seq.)
>WENV170620840
FUWD013041031
[FUWD] metagenome; unknown
296
383
+
Ser
TGA
[ENA]
¢þ
>WENV170628995
FUWD013258121
[FUWD] metagenome; unknown
3554
3467
-
Ser
TGA
[ENA]
¢þ
>SRA1035981
SRR035089.419496
454 Sequencing (SRP001810)
112
25
-
Ser
TGA
[SRA]
>SRA1044646
SRR035092.316048
454 Sequencing (SRP001813)
137
224
+
Ser
TGA
[SRA]
Identical group No.45890 (6 seq.)
>WENV170622796
FUWD013121141
[FUWD] metagenome; unknown
1188
1101
-
Ser
TGA
[ENA]
¢þ
>WENV170631009
FUWD013334893
[FUWD] metagenome; unknown
1188
1101
-
Ser
TGA
[ENA]
¢þ
>SRA1017165
SRR035082.92167
454 Sequencing (SRP001803)
59
146
+
Ser
TGA
[SRA]
>SRA1029777
SRR035087.180138
454 Sequencing (SRP001808)
170
257
+
Ser
TGA
[SRA]
>SRA1036603
SRR035089.560196
454 Sequencing (SRP001810)
105
192
+
Ser
TGA
[SRA]
>SRA1044423
SRR035092.277058
454 Sequencing (SRP001813)
220
133
-
Ser
TGA
[SRA]
Identical group No.49603 (5 seq.)
>WENV170627114
FUWD013231456
[FUWD] metagenome; unknown
415
326
-
Ser
TGA
[ENA]
¢þ
>WENV170628994
FUWD013258121
[FUWD] metagenome; unknown
4284
4195
-
Ser
TGA
[ENA]
¢þ
>SRA1030691
SRR035087.314962
454 Sequencing (SRP001808)
193
104
-
Ser
TGA
[SRA]
>SRA1043028
SRR035092.24035
454 Sequencing (SRP001813)
454
365
-
Ser
TGA
[SRA]
>SRA1044297
SRR035092.254816
454 Sequencing (SRP001813)
111
200
+
Ser
TGA
[SRA]
Identical group No.57911 (3 seq.)
>WENV170604992
FUWD010440309
[FUWD] metagenome; unknown
760
671
-
Ser
TGA
[ENA]
¢þ
>SRA1040084
SRR035091.35589
454 Sequencing (SRP001812)
45
134
+
Ser
TGA
[SRA]
>SRA1044287
SRR035092.253042
454 Sequencing (SRP001813)
395
306
-
Ser
TGA
[SRA]
Identical group No.58047 (4 seq.)
>WENV170622242
FUWD013093928
[FUWD] metagenome; unknown
1147
1058
-
Ser
TGA
[ENA]
¢þ
>WENV170630454
FUWD013308770
[FUWD] metagenome; unknown
1147
1058
-
Ser
TGA
[ENA]
¢þ
>SRA1032547
SRR035088.43579
454 Sequencing (SRP001809)
299
210
-
Ser
TGA
[SRA]
>SRA1043172
SRR035092.63256
454 Sequencing (SRP001813)
323
234
-
Ser
TGA
[SRA]
Identical group No.60053 (1 seq.)
>SRA1043419
SRR035092.111477
454 Sequencing (SRP001813)
264
175
-
Ser
TGA
[SRA]
Identical group No.60056 (1 seq.)
>SRA1043592
SRR035092.143834
454 Sequencing (SRP001813)
300
389
+
Ser
TGA
[SRA]
Identical group No.60057 (1 seq.)
>SRA1043803
SRR035092.178317
454 Sequencing (SRP001813)
367
278
-
Ser
TGA
[SRA]
Identical group No.60060 (1 seq.)
>SRA1044081
SRR035092.221292
454 Sequencing (SRP001813)
210
298
+
Ser
TGA
[SRA]
Identical group No.60061 (1 seq.)
>SRA1044098
SRR035092.224281
454 Sequencing (SRP001813)
272
362
+
Ser
TGA
[SRA]
Identical group No.60066 (1 seq.)
>SRA1044556
SRR035092.300774
454 Sequencing (SRP001813)
186
97
-
Ser
TGA
[SRA]
Identical group No.80321 (1 seq.)
>SRA1043125
SRR035092.53581
454 Sequencing (SRP001813)
308
221
-
Ser
TGA
[SRA]
Identical group No.80329 (1 seq.)
>SRA1044020
SRR035092.210608
454 Sequencing (SRP001813)
132
44
-
Ser
TGA
[SRA]
Identical group No.87095 (3 seq.)
>SRA1036211
SRR035089.472164
454 Sequencing (SRP001810)
91
4
-
Ser
TGA
[SRA]
>SRA1036634
SRR035089.567749
454 Sequencing (SRP001810)
91
4
-
Ser
TGA
[SRA]
>SRA1044300
SRR035092.256077
454 Sequencing (SRP001813)
359
448
+
Ser
TGA
[SRA]
Identical group No.98545 (4 seq.)
>WENV170612395
FUWD012599139
[FUWD] metagenome; unknown
59
146
+
Ser
TGA
[ENA]
¢þ
>SRA1039981
SRR035091.9447
454 Sequencing (SRP001812)
59
146
+
Ser
TGA
[SRA]
>SRA1040116
SRR035091.41550
454 Sequencing (SRP001812)
101
14
-
Ser
TGA
[SRA]
>SRA1045123
SRR035092.416205
454 Sequencing (SRP001813)
509
422
-
Ser
TGA
[SRA]
Identical group No.98550 (3 seq.)
>WENV170612592
FUWD012642002
[FUWD] metagenome; unknown
352
267
-
Ser
TGA
[ENA]
¢þ
>SRA1032526
SRR035088.38812
454 Sequencing (SRP001809)
2
89
+
Ser
TGA
[SRA]
>SRA1043350
SRR035092.99390
454 Sequencing (SRP001813)
352
267
-
Ser
TGA
[SRA]
Identical group No.100537 (1 seq.)
>SRA1044149
SRR035092.231699
454 Sequencing (SRP001813)
31
118
+
Ser
TGA
[SRA]
Identical group No.112646 (3 seq.)
>WENV170605015
FUWD010441434
[FUWD] metagenome; unknown
44
130
+
Ser
TGA
[ENA]
¢þ
>SRA1036704
SRR035089.588253
454 Sequencing (SRP001810)
344
258
-
Ser
TGA
[SRA]
>SRA1044000
SRR035092.208509
454 Sequencing (SRP001813)
44
130
+
Ser
TGA
[SRA]
Identical group No.126281 (2 seq.)
>WENV170571173
FLOH01000084
[FLOH] marine metagenome; water
246216
246132
-
Ser
TGA
[ENA]
¢þ
>SRA1043635
SRR035092.152505
454 Sequencing (SRP001813)
106
22
-
Ser
TGA
[SRA]
Identical group No.131612 (2 seq.)
>WENV170608175
FUWD010899182
[FUWD] metagenome; unknown
467
553
+
Ser
TGA
[ENA]
¢þ
>SRA1044117
SRR035092.226854
454 Sequencing (SRP001813)
116
202
+
Ser
TGA
[SRA]
Identical group No.131707 (3 seq.)
>WENV170612617
FUWD012646236
[FUWD] metagenome; unknown
58
144
+
Ser
TGA
[ENA]
¢þ
>SRA1018419
SRR035082.289150
454 Sequencing (SRP001803)
142
56
-
Ser
TGA
[SRA]
>SRA1043710
SRR035092.163927
454 Sequencing (SRP001813)
58
144
+
Ser
TGA
[SRA]
Identical group No.134815 (1 seq.)
>SRA1043743
SRR035092.168310
454 Sequencing (SRP001813)
115
201
+
Ser
TGA
[SRA]
Identical group No.134818 (1 seq.)
>SRA1043908
SRR035092.192525
454 Sequencing (SRP001813)
224
310
+
Ser
TGA
[SRA]
Identical group No.165815 (10 seq.)
>WENV170624310
FUWD013179602
[FUWD] metagenome; unknown
2549
2634
+
Ser
TGA
[ENA]
¢þ
>WENV170632597
FUWD013384921
[FUWD] metagenome; unknown
2549
2634
+
Ser
TGA
[ENA]
¢þ
>SRA1018590
SRR035082.316718
454 Sequencing (SRP001803)
153
68
-
Ser
TGA
[SRA]
>SRA1040960
SRR035091.175064
454 Sequencing (SRP001812)
241
326
+
Ser
TGA
[SRA]
>SRA1041428
SRR035091.240508
454 Sequencing (SRP001812)
384
299
-
Ser
TGA
[SRA]
>SRA1042176
SRR035091.350118
454 Sequencing (SRP001812)
96
11
-
Ser
TGA
[SRA]
>SRA1042296
SRR035091.369113
454 Sequencing (SRP001812)
123
38
-
Ser
TGA
[SRA]
>SRA1043320
SRR035092.95911
454 Sequencing (SRP001813)
280
195
-
Ser
TGA
[SRA]
>SRA1048497
SRR035094.187192
454 Sequencing (SRP001815)
281
196
-
Ser
TGA
[SRA]
>SRA1048528
SRR035094.193742
454 Sequencing (SRP001815)
105
20
-
Ser
TGA
[SRA]
Identical group No.167744 (1 seq.)
>SRA1043184
SRR035092.65524
454 Sequencing (SRP001813)
262
344
+
Ser
TGA
[SRA]
Identical group No.167797 (1 seq.)
>SRA1042981
SRR035092.12299
454 Sequencing (SRP001813)
81
167
+
Ser
TGA
[SRA]
Identical group No.201096 (1 seq.)
>SRA1044599
SRR035092.308625
454 Sequencing (SRP001813)
369
452
+
Ser
TGA
[SRA]
Identical group No.218074 (13 seq.)
>WENV170627211
FUWD013232075
[FUWD] metagenome; unknown
6788
6706
-
Ser
TGA
[ENA]
¢þ
>WENV170632828
FUWD013387521
[FUWD] metagenome; unknown
6788
6706
-
Ser
TGA
[ENA]
¢þ
>SRA1017799
SRR035082.197761
454 Sequencing (SRP001803)
311
229
-
Ser
TGA
[SRA]
>SRA1032424
SRR035088.1266
454 Sequencing (SRP001809)
85
167
+
Ser
TGA
[SRA]
>SRA1034447
SRR035089.98275
454 Sequencing (SRP001810)
126
208
+
Ser
TGA
[SRA]
>SRA1035986
SRR035089.421345
454 Sequencing (SRP001810)
197
115
-
Ser
TGA
[SRA]
>SRA1040967
SRR035091.175459
454 Sequencing (SRP001812)
142
224
+
Ser
TGA
[SRA]
>SRA1041636
SRR035091.271809
454 Sequencing (SRP001812)
19
101
+
Ser
TGA
[SRA]
>SRA1041864
SRR035091.306505
454 Sequencing (SRP001812)
47
129
+
Ser
TGA
[SRA]
>SRA1042503
SRR035091.399118
454 Sequencing (SRP001812)
117
199
+
Ser
TGA
[SRA]
>SRA1043403
SRR035092.109105
454 Sequencing (SRP001813)
112
194
+
Ser
TGA
[SRA]
>SRA1050205
SRR035095.211988
454 Sequencing (SRP001816)
130
48
-
Ser
TGA
[SRA]
>SRA1050316
SRR035095.236031
454 Sequencing (SRP001816)
213
131
-
Ser
TGA
[SRA]
Identical group No.222869 (4 seq.)
>WENV170612637
FUWD012648995
[FUWD] metagenome; unknown
32
114
+
Ser
TGA
[ENA]
¢þ
>SRA1044004
SRR035092.208634
454 Sequencing (SRP001813)
32
114
+
Ser
TGA
[SRA]
>SRA1044239
SRR035092.246810
454 Sequencing (SRP001813)
374
456
+
Ser
TGA
[SRA]
>SRA1044939
SRR035092.376839
454 Sequencing (SRP001813)
31
113
+
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK