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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001813)
Anticodon = TTT
HIT:
41 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80320 (1 seq.)
>SRA1043083
SRR035092.41549
454 Sequencing (SRP001813)
167
79
-
Lys
TTT
[SRA]
Identical group No.100524 (1 seq.)
>SRA1043113
SRR035092.50026
454 Sequencing (SRP001813)
436
352
-
Lys
TTT
[SRA]
Identical group No.240912 (3 seq.)
>WENV170612665
FUWD012654240
[FUWD] metagenome; unknown
56
132
+
Lys
TTT
[ENA]
¢þ
>SRA1035882
SRR035089.394859
454 Sequencing (SRP001810)
235
159
-
Lys
TTT
[SRA]
>SRA1044594
SRR035092.307903
454 Sequencing (SRP001813)
56
132
+
Lys
TTT
[SRA]
Identical group No.256246 (1 seq.)
>SRA1043697
SRR035092.162164
454 Sequencing (SRP001813)
172
248
+
Lys
TTT
[SRA]
Identical group No.256268 (1 seq.)
>SRA1044255
SRR035092.248847
454 Sequencing (SRP001813)
182
107
-
Lys
TTT
[SRA]
Identical group No.256283 (1 seq.)
>SRA1044682
SRR035092.322096
454 Sequencing (SRP001813)
36
112
+
Lys
TTT
[SRA]
Identical group No.300572 (5 seq.)
>WENV170612057
FUWD012492663
[FUWD] metagenome; unknown
86
11
-
Lys
TTT
[ENA]
¢þ
>SRA1030791
SRR035087.332267
454 Sequencing (SRP001808)
86
11
-
Lys
TTT
[SRA]
>SRA1030811
SRR035087.333486
454 Sequencing (SRP001808)
86
11
-
Lys
TTT
[SRA]
>SRA1043116
SRR035092.50810
454 Sequencing (SRP001813)
65
140
+
Lys
TTT
[SRA]
>SRA1043750
SRR035092.170282
454 Sequencing (SRP001813)
66
141
+
Lys
TTT
[SRA]
Identical group No.316323 (8 seq.)
>WENV183805991
PVBE011073310
[PVBE] marine metagenome; water
1847
1774
-
Lys
TTT
[ENA]
¢þ
>WENV170213818
CEPX01052169
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
16553
16478
-
Lys
TTT
[ENA]
¢þ
>WENV170216860
CEPX01285945
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
74
+
Lys
TTT
[ENA]
¢þ
>WENV170219165
CEPZ01045817
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
178
251
+
Lys
TTT
[ENA]
¢þ
>WENV170224854
CEQE01090380
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2862
2787
-
Lys
TTT
[ENA]
¢þ
>WENV170604996
FUWD010440656
[FUWD] metagenome; unknown
693
766
+
Lys
TTT
[ENA]
¢þ
>SRA1043141
SRR035092.57323
454 Sequencing (SRP001813)
273
346
+
Lys
TTT
[SRA]
>SRA1044944
SRR035092.378145
454 Sequencing (SRP001813)
438
365
-
Lys
TTT
[SRA]
Identical group No.357523 (7 seq.)
>WENV170598839
FUWD010051030
[FUWD] metagenome; unknown
108
33
-
Lys
TTT
[ENA]
¢þ
>WENV170624528
FUWD013182687
[FUWD] metagenome; unknown
179
104
-
Lys
TTT
[ENA]
¢þ
>WENV170632814
FUWD013387402
[FUWD] metagenome; unknown
179
104
-
Lys
TTT
[ENA]
¢þ
>SRA1040426
SRR035091.95882
454 Sequencing (SRP001812)
90
165
+
Lys
TTT
[SRA]
>SRA1042428
SRR035091.385690
454 Sequencing (SRP001812)
108
33
-
Lys
TTT
[SRA]
>SRA1043819
SRR035092.180089
454 Sequencing (SRP001813)
186
111
-
Lys
TTT
[SRA]
>SRA1049050
SRR035095.7343
454 Sequencing (SRP001816)
145
220
+
Lys
TTT
[SRA]
Identical group No.357798 (2 seq.)
>WENV170605177
FUWD010456434
[FUWD] metagenome; unknown
31
106
+
Lys
TTT
[ENA]
¢þ
>SRA1043427
SRR035092.112899
454 Sequencing (SRP001813)
100
23
-
Lys
TTT
[SRA]
Identical group No.358375 (3 seq.)
>WENV170612630
FUWD012647905
[FUWD] metagenome; unknown
168
244
+
Lys
TTT
[ENA]
¢þ
>SRA1043880
SRR035092.189853
454 Sequencing (SRP001813)
168
244
+
Lys
TTT
[SRA]
>SRA1044310
SRR035092.257085
454 Sequencing (SRP001813)
168
244
+
Lys
TTT
[SRA]
Identical group No.371927 (1 seq.)
>SRA1043049
SRR035092.30175
454 Sequencing (SRP001813)
174
251
+
Lys
TTT
[SRA]
Identical group No.371929 (1 seq.)
>SRA1043079
SRR035092.39521
454 Sequencing (SRP001813)
93
167
+
Lys
TTT
[SRA]
Identical group No.371967 (1 seq.)
>SRA1043517
SRR035092.130528
454 Sequencing (SRP001813)
306
230
-
Lys
TTT
[SRA]
Identical group No.372010 (1 seq.)
>SRA1043933
SRR035092.196631
454 Sequencing (SRP001813)
159
84
-
Lys
TTT
[SRA]
Identical group No.372011 (1 seq.)
>SRA1043948
SRR035092.200151
454 Sequencing (SRP001813)
275
350
+
Lys
TTT
[SRA]
Identical group No.372048 (1 seq.)
>SRA1044391
SRR035092.272789
454 Sequencing (SRP001813)
180
256
+
Lys
TTT
[SRA]
Identical group No.453666 (11 seq.)
>WENV170621002
FUWD013045630
[FUWD] metagenome; unknown
296
371
+
Lys
TTT
[ENA]
¢þ
>WENV170629159
FUWD013262525
[FUWD] metagenome; unknown
296
371
+
Lys
TTT
[ENA]
¢þ
>SRA1019360
SRR035082.441958
454 Sequencing (SRP001803)
266
341
+
Lys
TTT
[SRA]
>SRA1035279
SRR035089.274142
454 Sequencing (SRP001810)
320
395
+
Lys
TTT
[SRA]
>SRA1040609
SRR035091.122403
454 Sequencing (SRP001812)
307
232
-
Lys
TTT
[SRA]
>SRA1041196
SRR035091.212361
454 Sequencing (SRP001812)
398
323
-
Lys
TTT
[SRA]
>SRA1042463
SRR035091.390753
454 Sequencing (SRP001812)
92
167
+
Lys
TTT
[SRA]
>SRA1042632
SRR035091.419678
454 Sequencing (SRP001812)
225
150
-
Lys
TTT
[SRA]
>SRA1044364
SRR035092.266317
454 Sequencing (SRP001813)
470
395
-
Lys
TTT
[SRA]
>SRA1049453
SRR035095.80167
454 Sequencing (SRP001816)
309
234
-
Lys
TTT
[SRA]
>SRA1050391
SRR035095.250939
454 Sequencing (SRP001816)
378
303
-
Lys
TTT
[SRA]
Identical group No.484077 (5 seq.)
>WENV170607900
FUWD010869555
[FUWD] metagenome; unknown
26
99
+
Lys
TTT
[ENA]
¢þ
>SRA1029023
SRR035087.60108
454 Sequencing (SRP001808)
92
19
-
Lys
TTT
[SRA]
>SRA1029481
SRR035087.134756
454 Sequencing (SRP001808)
92
19
-
Lys
TTT
[SRA]
>SRA1031586
SRR035087.454664
454 Sequencing (SRP001808)
92
19
-
Lys
TTT
[SRA]
>SRA1042999
SRR035092.18135
454 Sequencing (SRP001813)
272
199
-
Lys
TTT
[SRA]
Identical group No.484714 (6 seq.)
>WENV170616069
FUWD012876372
[FUWD] metagenome; unknown
220
146
-
Lys
TTT
[ENA]
¢þ
>SRA1019217
SRR035082.420261
454 Sequencing (SRP001803)
395
321
-
Lys
TTT
[SRA]
>SRA1044487
SRR035092.287975
454 Sequencing (SRP001813)
280
354
+
Lys
TTT
[SRA]
>SRA1046849
SRR035093.398638
454 Sequencing (SRP001814)
45
119
+
Lys
TTT
[SRA]
>SRA1047489
SRR035093.555008
454 Sequencing (SRP001814)
134
60
-
Lys
TTT
[SRA]
>SRA1050895
SRR035096.45632
454 Sequencing (SRP001817)
408
482
+
Lys
TTT
[SRA]
Identical group No.547796 (5 seq.)
>WENV170605028
FUWD010442008
[FUWD] metagenome; unknown
49
122
+
Lys
TTT
[ENA]
¢þ
>WENV170613238
FUWD012791419
[FUWD] metagenome; unknown
528
603
+
Lys
TTT
[ENA]
¢þ
>SRA1020317
SRR035083.96350
454 Sequencing (SRP001804)
49
122
+
Lys
TTT
[SRA]
>SRA1021930
SRR035083.329004
454 Sequencing (SRP001804)
49
122
+
Lys
TTT
[SRA]
>SRA1044977
SRR035092.383955
454 Sequencing (SRP001813)
80
5
-
Lys
TTT
[SRA]
Identical group No.548505 (2 seq.)
>WENV170613422
FUWD012802908
[FUWD] metagenome; unknown
546
471
-
Lys
TTT
[ENA]
¢þ
>SRA1043098
SRR035092.46453
454 Sequencing (SRP001813)
97
22
-
Lys
TTT
[SRA]
Identical group No.548751 (4 seq.)
>WENV170621822
FUWD013074397
[FUWD] metagenome; unknown
2229
2302
+
Lys
TTT
[ENA]
¢þ
>WENV170629223
FUWD013264554
[FUWD] metagenome; unknown
9155
9228
+
Lys
TTT
[ENA]
¢þ
>SRA1024464
SRR035084.331523
454 Sequencing (SRP001805)
296
369
+
Lys
TTT
[SRA]
>SRA1044431
SRR035092.279380
454 Sequencing (SRP001813)
78
151
+
Lys
TTT
[SRA]
Identical group No.562968 (1 seq.)
>SRA1044267
SRR035092.250419
454 Sequencing (SRP001813)
180
107
-
Lys
TTT
[SRA]
Identical group No.562979 (1 seq.)
>SRA1044409
SRR035092.275344
454 Sequencing (SRP001813)
77
152
+
Lys
TTT
[SRA]
Identical group No.562995 (1 seq.)
>SRA1044565
SRR035092.301956
454 Sequencing (SRP001813)
404
478
+
Lys
TTT
[SRA]
Identical group No.563005 (1 seq.)
>SRA1044643
SRR035092.315795
454 Sequencing (SRP001813)
51
124
+
Lys
TTT
[SRA]
Identical group No.563015 (1 seq.)
>SRA1044751
SRR035092.333467
454 Sequencing (SRP001813)
179
104
-
Lys
TTT
[SRA]
Identical group No.563042 (1 seq.)
>SRA1045044
SRR035092.398555
454 Sequencing (SRP001813)
117
191
+
Lys
TTT
[SRA]
Identical group No.711104 (2 seq.)
>WENV170612629
FUWD012647889
[FUWD] metagenome; unknown
45
119
+
Lys
TTT
[ENA]
¢þ
>SRA1043879
SRR035092.189699
454 Sequencing (SRP001813)
45
119
+
Lys
TTT
[SRA]
Identical group No.711561 (5 seq.)
>WENV170626914
FUWD013230047
[FUWD] metagenome; unknown
4339
4265
-
Lys
TTT
[ENA]
¢þ
>WENV170629813
FUWD013282546
[FUWD] metagenome; unknown
7699
7773
+
Lys
TTT
[ENA]
¢þ
>SRA1041494
SRR035091.249833
454 Sequencing (SRP001812)
128
56
-
Lys
TTT
[SRA]
>SRA1044168
SRR035092.234778
454 Sequencing (SRP001813)
407
333
-
Lys
TTT
[SRA]
>SRA1044611
SRR035092.309201
454 Sequencing (SRP001813)
406
332
-
Lys
TTT
[SRA]
Identical group No.720193 (2 seq.)
>SRA1043041
SRR035092.28570
454 Sequencing (SRP001813)
106
32
-
Lys
TTT
[SRA]
>SRA1043236
SRR035092.78229
454 Sequencing (SRP001813)
106
32
-
Lys
TTT
[SRA]
Identical group No.720273 (1 seq.)
>SRA1043957
SRR035092.201188
454 Sequencing (SRP001813)
234
308
+
Lys
TTT
[SRA]
Identical group No.720325 (1 seq.)
>SRA1044569
SRR035092.302713
454 Sequencing (SRP001813)
205
131
-
Lys
TTT
[SRA]
Identical group No.720356 (1 seq.)
>SRA1044828
SRR035092.353179
454 Sequencing (SRP001813)
336
262
-
Lys
TTT
[SRA]
Identical group No.720374 (1 seq.)
>SRA1044962
SRR035092.380890
454 Sequencing (SRP001813)
155
81
-
Lys
TTT
[SRA]
Identical group No.720385 (1 seq.)
>SRA1045090
SRR035092.409063
454 Sequencing (SRP001813)
244
172
-
Lys
TTT
[SRA]
Identical group No.805448 (15 seq.)
>WENV170622865
FUWD013124413
[FUWD] metagenome; unknown
1588
1661
+
Lys
TTT
[ENA]
¢þ
>WENV170624357
FUWD013180374
[FUWD] metagenome; unknown
8287
8360
+
Lys
TTT
[ENA]
¢þ
>WENV170627823
FUWD013237777
[FUWD] metagenome; unknown
11473
11546
+
Lys
TTT
[ENA]
¢þ
>WENV170631084
FUWD013337946
[FUWD] metagenome; unknown
1588
1661
+
Lys
TTT
[ENA]
¢þ
>SRA1017421
SRR035082.136504
454 Sequencing (SRP001803)
83
10
-
Lys
TTT
[SRA]
>SRA1033243
SRR035088.204515
454 Sequencing (SRP001809)
132
59
-
Lys
TTT
[SRA]
>SRA1040082
SRR035091.34537
454 Sequencing (SRP001812)
202
129
-
Lys
TTT
[SRA]
>SRA1040294
SRR035091.73472
454 Sequencing (SRP001812)
81
8
-
Lys
TTT
[SRA]
>SRA1040649
SRR035091.127285
454 Sequencing (SRP001812)
279
352
+
Lys
TTT
[SRA]
>SRA1041005
SRR035091.180668
454 Sequencing (SRP001812)
48
121
+
Lys
TTT
[SRA]
>SRA1041521
SRR035091.255238
454 Sequencing (SRP001812)
236
163
-
Lys
TTT
[SRA]
>SRA1041735
SRR035091.284316
454 Sequencing (SRP001812)
11
84
+
Lys
TTT
[SRA]
>SRA1042824
SRR035091.451197
454 Sequencing (SRP001812)
294
221
-
Lys
TTT
[SRA]
>SRA1045087
SRR035092.407544
454 Sequencing (SRP001813)
178
251
+
Lys
TTT
[SRA]
>SRA1050437
SRR035095.262629
454 Sequencing (SRP001816)
269
196
-
Lys
TTT
[SRA]
Identical group No.809526 (1 seq.)
>SRA1044331
SRR035092.261270
454 Sequencing (SRP001813)
463
535
+
Lys
TTT
[SRA]
Identical group No.809528 (1 seq.)
>SRA1044390
SRR035092.272789
454 Sequencing (SRP001813)
70
143
+
Lys
TTT
[SRA]
Identical group No.809535 (1 seq.)
>SRA1044490
SRR035092.287977
454 Sequencing (SRP001813)
3
76
+
Lys
TTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK