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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = AAG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74730 (4 seq.)
>WENV170612226
FUWD012541889
[FUWD] metagenome; unknown
211
299
+
Leu
AAG
[ENA]
¢þ
>SRA1029758
SRR035087.177031
454 Sequencing (SRP001808)
302
390
+
Leu
AAG
[SRA]
>SRA1033987
SRR035088.433700
454 Sequencing (SRP001809)
211
299
+
Leu
AAG
[SRA]
>SRA1048420
SRR035094.169512
454 Sequencing (SRP001815)
124
36
-
Leu
AAG
[SRA]
Identical group No.107016 (1 seq.)
>SRA1048409
SRR035094.166735
454 Sequencing (SRP001815)
217
304
+
Leu
AAG
[SRA]
Identical group No.112514 (13 seq.)
>WENV170625884
FUWD013208279
[FUWD] metagenome; unknown
2570
2484
-
Leu
AAG
[ENA]
¢þ
>WENV170625886
FUWD013208280
[FUWD] metagenome; unknown
249
163
-
Leu
AAG
[ENA]
¢þ
>WENV170634101
FUWD013409898
[FUWD] metagenome; unknown
2570
2484
-
Leu
AAG
[ENA]
¢þ
>WENV170634103
FUWD013409899
[FUWD] metagenome; unknown
249
163
-
Leu
AAG
[ENA]
¢þ
>SRA1025516
SRR035085.30004
454 Sequencing (SRP001806)
124
210
+
Leu
AAG
[SRA]
>SRA1031203
SRR035087.390745
454 Sequencing (SRP001808)
166
252
+
Leu
AAG
[SRA]
>SRA1034030
SRR035088.458178
454 Sequencing (SRP001809)
116
30
-
Leu
AAG
[SRA]
>SRA1034349
SRR035089.63644
454 Sequencing (SRP001810)
177
91
-
Leu
AAG
[SRA]
>SRA1047774
SRR035094.39415
454 Sequencing (SRP001815)
46
132
+
Leu
AAG
[SRA]
>SRA1048182
SRR035094.123771
454 Sequencing (SRP001815)
306
392
+
Leu
AAG
[SRA]
>SRA1048586
SRR035094.203946
454 Sequencing (SRP001815)
307
393
+
Leu
AAG
[SRA]
>SRA1048852
SRR035094.263604
454 Sequencing (SRP001815)
306
392
+
Leu
AAG
[SRA]
>SRA1049016
SRR035094.314189
454 Sequencing (SRP001815)
124
38
-
Leu
AAG
[SRA]
Identical group No.112616 (10 seq.)
>WENV170617862
FUWD012940153
[FUWD] metagenome; unknown
599
514
-
Leu
AAG
[ENA]
¢þ
>SRA1017298
SRR035082.114491
454 Sequencing (SRP001803)
119
34
-
Leu
AAG
[SRA]
>SRA1035743
SRR035089.366761
454 Sequencing (SRP001810)
242
157
-
Leu
AAG
[SRA]
>SRA1039971
SRR035091.4467
454 Sequencing (SRP001812)
194
279
+
Leu
AAG
[SRA]
>SRA1041705
SRR035091.280525
454 Sequencing (SRP001812)
20
105
+
Leu
AAG
[SRA]
>SRA1042073
SRR035091.334758
454 Sequencing (SRP001812)
62
147
+
Leu
AAG
[SRA]
>SRA1043895
SRR035092.191664
454 Sequencing (SRP001813)
89
174
+
Leu
AAG
[SRA]
>SRA1045079
SRR035092.406716
454 Sequencing (SRP001813)
99
184
+
Leu
AAG
[SRA]
>SRA1048847
SRR035094.262502
454 Sequencing (SRP001815)
237
152
-
Leu
AAG
[SRA]
>SRA1050537
SRR035095.286014
454 Sequencing (SRP001816)
103
18
-
Leu
AAG
[SRA]
Identical group No.145041 (1 seq.)
>SRA1048865
SRR035094.266408
454 Sequencing (SRP001815)
360
277
-
Leu
AAG
[SRA]
Identical group No.174307 (1 seq.)
>SRA1048385
SRR035094.162120
454 Sequencing (SRP001815)
558
476
-
Leu
AAG
[SRA]
Identical group No.174313 (1 seq.)
>SRA1048966
SRR035094.298321
454 Sequencing (SRP001815)
230
145
-
Leu
AAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK