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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = CAG
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.66806 (1 seq.)
>SRA1048233
SRR035094.131802
454 Sequencing (SRP001815)
341
254
-
Leu
CAG
[SRA]
Identical group No.66808 (1 seq.)
>SRA1048259
SRR035094.136114
454 Sequencing (SRP001815)
190
277
+
Leu
CAG
[SRA]
Identical group No.72761 (4 seq.)
>WENV170622822
FUWD013122436
[FUWD] metagenome; unknown
837
922
+
Leu
CAG
[ENA]
¢þ
>WENV170631040
FUWD013336006
[FUWD] metagenome; unknown
837
922
+
Leu
CAG
[ENA]
¢þ
>SRA1025490
SRR035085.23845
454 Sequencing (SRP001806)
106
191
+
Leu
CAG
[SRA]
>SRA1048299
SRR035094.141542
454 Sequencing (SRP001815)
60
145
+
Leu
CAG
[SRA]
Identical group No.79285 (4 seq.)
>WENV170622768
FUWD013120800
[FUWD] metagenome; unknown
1037
951
-
Leu
CAG
[ENA]
¢þ
>WENV170630981
FUWD013334571
[FUWD] metagenome; unknown
1037
951
-
Leu
CAG
[ENA]
¢þ
>SRA1041975
SRR035091.321861
454 Sequencing (SRP001812)
306
220
-
Leu
CAG
[SRA]
>SRA1048703
SRR035094.230992
454 Sequencing (SRP001815)
449
363
-
Leu
CAG
[SRA]
Identical group No.83995 (1 seq.)
>SRA1048153
SRR035094.118579
454 Sequencing (SRP001815)
340
254
-
Leu
CAG
[SRA]
Identical group No.87109 (9 seq.)
>WENV170605163
FUWD010455351
[FUWD] metagenome; unknown
19
104
+
Leu
CAG
[ENA]
¢þ
>WENV170618666
FUWD012981096
[FUWD] metagenome; unknown
180
95
-
Leu
CAG
[ENA]
¢þ
>WENV170626457
FUWD013223027
[FUWD] metagenome; unknown
2228
2143
-
Leu
CAG
[ENA]
¢þ
>SRA1035922
SRR035089.404310
454 Sequencing (SRP001810)
275
190
-
Leu
CAG
[SRA]
>SRA1036256
SRR035089.481805
454 Sequencing (SRP001810)
44
129
+
Leu
CAG
[SRA]
>SRA1040155
SRR035091.49523
454 Sequencing (SRP001812)
33
118
+
Leu
CAG
[SRA]
>SRA1048060
SRR035094.100384
454 Sequencing (SRP001815)
271
186
-
Leu
CAG
[SRA]
>SRA1048532
SRR035094.194685
454 Sequencing (SRP001815)
338
423
+
Leu
CAG
[SRA]
>SRA1048892
SRR035094.277792
454 Sequencing (SRP001815)
21
106
+
Leu
CAG
[SRA]
Identical group No.92379 (2 seq.)
>WENV183513073
OMKS01002567
[OMKS] sediment metagenome; hot spring sediment
773
687
-
Leu
CAG
[ENA]
¢þ
>SRA1048335
SRR035094.149733
454 Sequencing (SRP001815)
327
414
+
Leu
CAG
[SRA]
Identical group No.107011 (1 seq.)
>SRA1048145
SRR035094.116122
454 Sequencing (SRP001815)
505
417
-
Leu
CAG
[SRA]
Identical group No.107017 (1 seq.)
>SRA1048471
SRR035094.181316
454 Sequencing (SRP001815)
455
370
-
Leu
CAG
[SRA]
Identical group No.107019 (1 seq.)
>SRA1048882
SRR035094.273366
454 Sequencing (SRP001815)
80
167
+
Leu
CAG
[SRA]
Identical group No.112522 (13 seq.)
>WENV170598342
FUWD010032533
[FUWD] metagenome; unknown
357
271
-
Leu
CAG
[ENA]
¢þ
>WENV170624074
FUWD013174706
[FUWD] metagenome; unknown
263
177
-
Leu
CAG
[ENA]
¢þ
>WENV170632361
FUWD013381008
[FUWD] metagenome; unknown
263
177
-
Leu
CAG
[ENA]
¢þ
>SRA1025730
SRR035085.71774
454 Sequencing (SRP001806)
300
214
-
Leu
CAG
[SRA]
>SRA1026570
SRR035085.229940
454 Sequencing (SRP001806)
343
257
-
Leu
CAG
[SRA]
>SRA1026603
SRR035085.238086
454 Sequencing (SRP001806)
343
257
-
Leu
CAG
[SRA]
>SRA1030207
SRR035087.242421
454 Sequencing (SRP001808)
153
239
+
Leu
CAG
[SRA]
>SRA1031344
SRR035087.415108
454 Sequencing (SRP001808)
302
216
-
Leu
CAG
[SRA]
>SRA1034089
SRR035088.482101
454 Sequencing (SRP001809)
123
37
-
Leu
CAG
[SRA]
>SRA1034637
SRR035089.142166
454 Sequencing (SRP001810)
220
306
+
Leu
CAG
[SRA]
>SRA1035176
SRR035089.253535
454 Sequencing (SRP001810)
134
220
+
Leu
CAG
[SRA]
>SRA1035250
SRR035089.267821
454 Sequencing (SRP001810)
48
134
+
Leu
CAG
[SRA]
>SRA1048777
SRR035094.246258
454 Sequencing (SRP001815)
273
187
-
Leu
CAG
[SRA]
Identical group No.112581 (3 seq.)
>WENV183721382
PDWJ01066410
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1472
1556
+
Leu
CAG
[ENA]
¢þ
>SRA1034753
SRR035089.167258
454 Sequencing (SRP001810)
255
169
-
Leu
CAG
[SRA]
>SRA1048398
SRR035094.164890
454 Sequencing (SRP001815)
259
173
-
Leu
CAG
[SRA]
Identical group No.123095 (4 seq.)
>WENV170612965
FUWD012766933
[FUWD] metagenome; unknown
255
169
-
Leu
CAG
[ENA]
¢þ
>SRA1048537
SRR035094.195974
454 Sequencing (SRP001815)
309
395
+
Leu
CAG
[SRA]
>SRA1054773
SRR035099.209613
454 Sequencing (SRP001820)
347
261
-
Leu
CAG
[SRA]
>SRA1054824
SRR035099.223009
454 Sequencing (SRP001820)
103
189
+
Leu
CAG
[SRA]
Identical group No.131760 (4 seq.)
>WENV170619079
FUWD012998754
[FUWD] metagenome; unknown
490
404
-
Leu
CAG
[ENA]
¢þ
>SRA1016980
SRR035082.63103
454 Sequencing (SRP001803)
372
286
-
Leu
CAG
[SRA]
>SRA1018219
SRR035082.257249
454 Sequencing (SRP001803)
138
224
+
Leu
CAG
[SRA]
>SRA1048185
SRR035094.123926
454 Sequencing (SRP001815)
358
272
-
Leu
CAG
[SRA]
Identical group No.131788 (5 seq.)
>WENV170621654
FUWD013067561
[FUWD] metagenome; unknown
843
929
+
Leu
CAG
[ENA]
¢þ
>WENV170629845
FUWD013283404
[FUWD] metagenome; unknown
843
929
+
Leu
CAG
[ENA]
¢þ
>SRA1048131
SRR035094.113892
454 Sequencing (SRP001815)
161
247
+
Leu
CAG
[SRA]
>SRA1048374
SRR035094.159642
454 Sequencing (SRP001815)
162
248
+
Leu
CAG
[SRA]
>SRA1049094
SRR035095.18489
454 Sequencing (SRP001816)
187
273
+
Leu
CAG
[SRA]
Identical group No.145029 (1 seq.)
>SRA1048098
SRR035094.108002
454 Sequencing (SRP001815)
533
447
-
Leu
CAG
[SRA]
Identical group No.145032 (1 seq.)
>SRA1048251
SRR035094.134642
454 Sequencing (SRP001815)
309
223
-
Leu
CAG
[SRA]
Identical group No.145034 (1 seq.)
>SRA1048404
SRR035094.166059
454 Sequencing (SRP001815)
437
351
-
Leu
CAG
[SRA]
Identical group No.145039 (1 seq.)
>SRA1048660
SRR035094.218962
454 Sequencing (SRP001815)
173
259
+
Leu
CAG
[SRA]
Identical group No.157509 (3 seq.)
>WENV170612055
FUWD012491343
[FUWD] metagenome; unknown
206
289
+
Leu
CAG
[ENA]
¢þ
>SRA1030706
SRR035087.317281
454 Sequencing (SRP001808)
267
350
+
Leu
CAG
[SRA]
>SRA1047936
SRR035094.70137
454 Sequencing (SRP001815)
216
299
+
Leu
CAG
[SRA]
Identical group No.174311 (1 seq.)
>SRA1048824
SRR035094.257944
454 Sequencing (SRP001815)
246
328
+
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK