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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = CCG
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272563 (11 seq.)
>WENV170624130
FUWD013175373
[FUWD] metagenome; unknown
8225
8301
+
Arg
CCG
[ENA]
¢þ
>WENV170632412
FUWD013381548
[FUWD] metagenome; unknown
8225
8301
+
Arg
CCG
[ENA]
¢þ
>SRA1030156
SRR035087.234854
454 Sequencing (SRP001808)
71
146
+
Arg
CCG
[SRA]
>SRA1033686
SRR035088.325679
454 Sequencing (SRP001809)
473
397
-
Arg
CCG
[SRA]
>SRA1034478
SRR035089.105695
454 Sequencing (SRP001810)
231
307
+
Arg
CCG
[SRA]
>SRA1035021
SRR035089.220716
454 Sequencing (SRP001810)
173
248
+
Arg
CCG
[SRA]
>SRA1047657
SRR035094.13338
454 Sequencing (SRP001815)
214
290
+
Arg
CCG
[SRA]
>SRA1047683
SRR035094.19607
454 Sequencing (SRP001815)
296
220
-
Arg
CCG
[SRA]
>SRA1048093
SRR035094.107205
454 Sequencing (SRP001815)
407
331
-
Arg
CCG
[SRA]
>SRA1048166
SRR035094.121140
454 Sequencing (SRP001815)
297
221
-
Arg
CCG
[SRA]
>SRA1049312
SRR035095.54840
454 Sequencing (SRP001816)
162
86
-
Arg
CCG
[SRA]
Identical group No.272879 (8 seq.)
>WENV170625174
FUWD013193127
[FUWD] metagenome; unknown
362
286
-
Arg
CCG
[ENA]
¢þ
>WENV170633430
FUWD013396202
[FUWD] metagenome; unknown
362
286
-
Arg
CCG
[ENA]
¢þ
>SRA1030496
SRR035087.288032
454 Sequencing (SRP001808)
449
373
-
Arg
CCG
[SRA]
>SRA1032668
SRR035088.75765
454 Sequencing (SRP001809)
23
99
+
Arg
CCG
[SRA]
>SRA1032861
SRR035088.117854
454 Sequencing (SRP001809)
466
390
-
Arg
CCG
[SRA]
>SRA1036331
SRR035089.496812
454 Sequencing (SRP001810)
294
218
-
Arg
CCG
[SRA]
>SRA1036540
SRR035089.544093
454 Sequencing (SRP001810)
63
139
+
Arg
CCG
[SRA]
>SRA1048486
SRR035094.184750
454 Sequencing (SRP001815)
254
178
-
Arg
CCG
[SRA]
Identical group No.358391 (3 seq.)
>WENV170612751
FUWD012679496
[FUWD] metagenome; unknown
280
204
-
Arg
CCG
[ENA]
¢þ
>SRA1048568
SRR035094.200932
454 Sequencing (SRP001815)
290
214
-
Arg
CCG
[SRA]
>SRA1048772
SRR035094.245333
454 Sequencing (SRP001815)
33
109
+
Arg
CCG
[SRA]
Identical group No.372126 (3 seq.)
>WENV170001102
AGBJ01004535
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
726
802
+
Arg
CCG
[ENA]
¢þ
>SRA1048731
SRR035094.236420
454 Sequencing (SRP001815)
157
233
+
Arg
CCG
[SRA]
>SRA1049158
SRR035095.30286
454 Sequencing (SRP001816)
172
248
+
Arg
CCG
[SRA]
Identical group No.415511 (1 seq.)
>SRA1047674
SRR035094.18161
454 Sequencing (SRP001815)
290
214
-
Arg
CCG
[SRA]
Identical group No.415540 (1 seq.)
>SRA1048078
SRR035094.104381
454 Sequencing (SRP001815)
24
100
+
Arg
CCG
[SRA]
Identical group No.415557 (1 seq.)
>SRA1048343
SRR035094.151542
454 Sequencing (SRP001815)
278
354
+
Arg
CCG
[SRA]
Identical group No.512644 (14 seq.)
>W131208420
ATHJ01000076
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [ATHJ]
172338
172413
+
Arg
CCG
[ENA]
¡û
>C171038086
CP015381
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP015381]
1405893
1405818
-
Arg
CCG
-
¡û
>C171100892
CP019913
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [CP019913]
1406246
1406171
-
Arg
CCG
-
¡û
>WENV180274928
OBHO01012281
[OBHO] metagenome; water
98
173
+
Arg
CCG
[ENA]
¢þ
>WENV180346141
OBLN01030328
[OBLN] sediment metagenome; sediment
585
660
+
Arg
CCG
[ENA]
¢þ
>WENV170623105
FUWD013136630
[FUWD] metagenome; unknown
695
770
+
Arg
CCG
[ENA]
¢þ
>WENV170697367
LGVF01122655
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
223
148
-
Arg
CCG
[ENA]
¢þ
>SRA1033684
SRR035088.324319
454 Sequencing (SRP001809)
45
120
+
Arg
CCG
[SRA]
>SRA1047772
SRR035094.38497
454 Sequencing (SRP001815)
396
321
-
Arg
CCG
[SRA]
>SRA1049146
SRR035095.28072
454 Sequencing (SRP001816)
351
426
+
Arg
CCG
[SRA]
>SRA1049192
SRR035095.35150
454 Sequencing (SRP001816)
211
286
+
Arg
CCG
[SRA]
>SRA1049631
SRR035095.108085
454 Sequencing (SRP001816)
211
286
+
Arg
CCG
[SRA]
>SRA1050312
SRR035095.235400
454 Sequencing (SRP001816)
212
287
+
Arg
CCG
[SRA]
>W1710600539
FUWN01000006
Thermodesulfobacteriota
Desulfococcus multivorans DSM 2059 [FUWN]
46476
46401
-
Arg
CCG
[ENA]
¡û
Identical group No.612555 (1 seq.)
>SRA1048301
SRR035094.141832
454 Sequencing (SRP001815)
216
291
+
Arg
CCG
[SRA]
Identical group No.672317 (5 seq.)
>WENV170621353
FUWD013056534
[FUWD] metagenome; unknown
171
99
-
Arg
CCG
[ENA]
¢þ
>WENV170629530
FUWD013272944
[FUWD] metagenome; unknown
171
99
-
Arg
CCG
[ENA]
¢þ
>SRA1017853
SRR035082.206712
454 Sequencing (SRP001803)
226
297
+
Arg
CCG
[SRA]
>SRA1029400
SRR035087.121458
454 Sequencing (SRP001808)
360
432
+
Arg
CCG
[SRA]
>SRA1048014
SRR035094.89016
454 Sequencing (SRP001815)
262
190
-
Arg
CCG
[SRA]
Identical group No.686056 (9 seq.)
>WENV170620081
FUWD013025463
[FUWD] metagenome; unknown
5538
5610
+
Arg
CCG
[ENA]
¢þ
>WENV170628206
FUWD013243365
[FUWD] metagenome; unknown
5538
5610
+
Arg
CCG
[ENA]
¢þ
>WENV170697211
LGVF01095749
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
116
44
-
Arg
CCG
[ENA]
¢þ
>SRA1037763
SRR035090.190053
454 Sequencing (SRP001811)
89
17
-
Arg
CCG
[SRA]
>SRA1048207
SRR035094.128915
454 Sequencing (SRP001815)
269
197
-
Arg
CCG
[SRA]
>SRA1049738
SRR035095.129731
454 Sequencing (SRP001816)
476
404
-
Arg
CCG
[SRA]
>SRA1050529
SRR035095.283404
454 Sequencing (SRP001816)
80
152
+
Arg
CCG
[SRA]
>SRA1054210
SRR035099.85080
454 Sequencing (SRP001820)
177
249
+
Arg
CCG
[SRA]
>SRA1054848
SRR035099.228940
454 Sequencing (SRP001820)
255
183
-
Arg
CCG
[SRA]
Identical group No.751694 (1 seq.)
>SRA1047951
SRR035094.74937
454 Sequencing (SRP001815)
126
200
+
Arg
CCG
[SRA]
Identical group No.751705 (1 seq.)
>SRA1048241
SRR035094.133104
454 Sequencing (SRP001815)
371
442
+
Arg
CCG
[SRA]
Identical group No.751728 (1 seq.)
>SRA1048804
SRR035094.253676
454 Sequencing (SRP001815)
363
289
-
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK