tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001815)

Anticodon = CGC

HIT: 19 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.415559 (1 seq.)
>SRA1048405 SRR035094.166059 454 Sequencing (SRP001815) 205 129 - Ala CGC [SRA]
Identical group No.453289 (10 seq.)
>WENV170625508 FUWD013199465 [FUWD] metagenome; unknown 526 451 - Ala CGC [ENA] ¢þ
>WENV170633738 FUWD013401836 [FUWD] metagenome; unknown 526 451 - Ala CGC [ENA] ¢þ
>SRA1025818 SRR035085.88766 454 Sequencing (SRP001806) 190 265 + Ala CGC [SRA]
>SRA1034840 SRR035089.183711 454 Sequencing (SRP001810) 76 1 - Ala CGC [SRA]
>SRA1047742 SRR035094.32863 454 Sequencing (SRP001815) 323 248 - Ala CGC [SRA]
>SRA1048094 SRR035094.107319 454 Sequencing (SRP001815) 443 368 - Ala CGC [SRA]
>SRA1048909 SRR035094.283227 454 Sequencing (SRP001815) 277 352 + Ala CGC [SRA]
>SRA1050164 SRR035095.204107 454 Sequencing (SRP001816) 238 163 - Ala CGC [SRA]
>SRA1050314 SRR035095.235562 454 Sequencing (SRP001816) 258 183 - Ala CGC [SRA]
>SRA1050466 SRR035095.268840 454 Sequencing (SRP001816) 124 49 - Ala CGC [SRA]
Identical group No.453301 (18 seq.)
>WENV170599810 FUWD010093140 [FUWD] metagenome; unknown 98 23 - Ala CGC [ENA] ¢þ
>WENV170616607 FUWD012893975 [FUWD] metagenome; unknown 454 379 - Ala CGC [ENA] ¢þ
>WENV170624460 FUWD013182011 [FUWD] metagenome; unknown 297 222 - Ala CGC [ENA] ¢þ
>WENV170632745 FUWD013386866 [FUWD] metagenome; unknown 297 222 - Ala CGC [ENA] ¢þ
>WENV170698493 LGVF01347033 [LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge 340 415 + Ala CGC [ENA] ¢þ
>SRA1025895 SRR035085.104932 454 Sequencing (SRP001806) 291 216 - Ala CGC [SRA]
>SRA1029030 SRR035087.61205 454 Sequencing (SRP001808) 181 106 - Ala CGC [SRA]
>SRA1029222 SRR035087.94344 454 Sequencing (SRP001808) 248 173 - Ala CGC [SRA]
>SRA1029279 SRR035087.102080 454 Sequencing (SRP001808) 7 82 + Ala CGC [SRA]
>SRA1029387 SRR035087.119831 454 Sequencing (SRP001808) 181 106 - Ala CGC [SRA]
>SRA1029856 SRR035087.192688 454 Sequencing (SRP001808) 301 376 + Ala CGC [SRA]
>SRA1034771 SRR035089.169518 454 Sequencing (SRP001810) 444 519 + Ala CGC [SRA]
>SRA1035237 SRR035089.265471 454 Sequencing (SRP001810) 267 342 + Ala CGC [SRA]
>SRA1036282 SRR035089.487511 454 Sequencing (SRP001810) 267 342 + Ala CGC [SRA]
>SRA1048414 SRR035094.167855 454 Sequencing (SRP001815) 130 205 + Ala CGC [SRA]
>SRA1048502 SRR035094.187989 454 Sequencing (SRP001815) 137 212 + Ala CGC [SRA]
>SRA1048510 SRR035094.190647 454 Sequencing (SRP001815) 139 214 + Ala CGC [SRA]
>SRA1049159 SRR035095.30316 454 Sequencing (SRP001816) 283 358 + Ala CGC [SRA]
Identical group No.453429 (12 seq.)
>W131193769 ASPA01000029 Atribacterota Atribacteria bacterium SCGC AAA255-G05 OP9 bacterium SCGC AAA255-G05 [ASPA] 17936 17861 - Ala CGC [ENA] ¡û
>WENV170016864 BARS01021180 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 294 219 - Ala CGC [ENA] ¢þ
>WENV170017094 BARS01048951 [BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula 74 1 - Ala CGC [ENA] ¢þ
>WENV170617840 FUWD012938969 [FUWD] metagenome; unknown 768 693 - Ala CGC [ENA] ¢þ
>WENV170617841 FUWD012938970 [FUWD] metagenome; unknown 406 331 - Ala CGC [ENA] ¢þ
>WENV170694842 LGVE01012467 [LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge 265 190 - Ala CGC [ENA] ¢þ
>SRA1026662 SRR035085.252364 454 Sequencing (SRP001806) 155 230 + Ala CGC [SRA]
>SRA1028889 SRR035087.31535 454 Sequencing (SRP001808) 145 70 - Ala CGC [SRA]
>SRA1029428 SRR035087.125602 454 Sequencing (SRP001808) 146 221 + Ala CGC [SRA]
>SRA1030374 SRR035087.269840 454 Sequencing (SRP001808) 565 490 - Ala CGC [SRA]
>SRA1031184 SRR035087.388347 454 Sequencing (SRP001808) 482 407 - Ala CGC [SRA]
>SRA1048516 SRR035094.192054 454 Sequencing (SRP001815) 83 158 + Ala CGC [SRA]
Identical group No.453691 (24 seq.)
>C171072597 CP018091 Cyanobacteriota Synechococcus sp. SynAce01 [CP018091] 1645677 1645603 - Ala CGC - ¡û
>WENV180366570 OBOD01045463 [OBOD] marine metagenome; ENVO:00002010 378 304 - Ala CGC [ENA] ¢þ
>WENV170400872 CEUE01157349 [CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 149 223 + Ala CGC [ENA] ¢þ
>WENV170533142 CEWO01100313 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 242 168 - Ala CGC [ENA] ¢þ
>WENV170614692 FUWD012839547 [FUWD] metagenome; unknown 9300 9374 + Ala CGC [ENA] ¢þ
>W1810389456 PXXO01000008 Cyanobacteriota Cyanobium usitatum str. Tous [PXXO] 112230 112158 - Ala CGC [ENA] ¡û
>W1810529759 QCVA01000013 Cyanobacteriota Synechococcus sp. AG-683-A22 [QCVA] 8962 8889 - Ala CGC [ENA] ¡û
>W1810529784 QCVB01000104 Cyanobacteriota Synechococcus sp. AG-683-B03 [QCVB] 1281 1355 + Ala CGC [ENA] ¡û
>W1810529840 QCVD01000037 Cyanobacteriota Synechococcus sp. AG-683-C23 [QCVD] 9382 9455 + Ala CGC [ENA] ¡û
>W1810529992 QCVM01000023 Cyanobacteriota Synechococcus sp. AG-686-B21 [QCVM] 4485 4559 + Ala CGC [ENA] ¡û
>W1810530016 QCVN01000046 Cyanobacteriota Synechococcus sp. AG-686-C21 [QCVN] 1473 1547 + Ala CGC [ENA] ¡û
>SRA1027813 SRR035086.199157 454 Sequencing (SRP001807) 86 160 + Ala CGC [SRA]
>SRA1028238 SRR035086.281002 454 Sequencing (SRP001807) 364 438 + Ala CGC [SRA]
>SRA1035384 SRR035089.294654 454 Sequencing (SRP001810) 361 287 - Ala CGC [SRA]
>SRA1048468 SRR035094.180920 454 Sequencing (SRP001815) 386 312 - Ala CGC [SRA]
>SRA1051739 SRR035098.67882 454 Sequencing (SRP001819) 188 114 - Ala CGC [SRA]
>SRA1052467 SRR035098.209230 454 Sequencing (SRP001819) 306 380 + Ala CGC [SRA]
>SRA1052790 SRR035098.275929 454 Sequencing (SRP001819) 94 168 + Ala CGC [SRA]
>SRA1052840 SRR035098.283583 454 Sequencing (SRP001819) 85 11 - Ala CGC [SRA]
>SRA1053020 SRR035098.318820 454 Sequencing (SRP001819) 85 159 + Ala CGC [SRA]
>SRA1053198 SRR035098.360388 454 Sequencing (SRP001819) 94 168 + Ala CGC [SRA]
>SRA1053855 SRR035098.517092 454 Sequencing (SRP001819) 160 86 - Ala CGC [SRA]
>W1610626654 LICO01000129 Cyanobacteriota cyanobacterium BACL30 MAG-120619-bin27 [LICO] 3361 3289 - Ala CGC [ENA] ¡û
>W1710757781 LICO01000129 Cyanobacteriota cyanobacterium BACL30 MAG-120619-bin27 [LICO] 3361 3289 - Ala CGC [ENA] ¡û
Identical group No.453797 (4 seq.)
>W1711408545 MGMU01000006 Chloroflexota Chloroflexi bacterium RBG_13_52_12 [MGMU] 13038 13110 + Ala CGC [ENA] ¡û
>WENV170612324 FUWD012575543 [FUWD] metagenome; unknown 112 185 + Ala CGC [ENA] ¢þ
>SRA1036079 SRR035089.439471 454 Sequencing (SRP001810) 124 197 + Ala CGC [SRA]
>SRA1048154 SRR035094.118841 454 Sequencing (SRP001815) 289 216 - Ala CGC [SRA]
Identical group No.453840 (10 seq.)
>WENV170607702 FUWD010850342 [FUWD] metagenome; unknown 320 246 - Ala CGC [ENA] ¢þ
>WENV170612056 FUWD012491973 [FUWD] metagenome; unknown 99 173 + Ala CGC [ENA] ¢þ
>SRA1018627 SRR035082.324799 454 Sequencing (SRP001803) 323 249 - Ala CGC [SRA]
>SRA1028850 SRR035087.20391 454 Sequencing (SRP001808) 135 209 + Ala CGC [SRA]
>SRA1030746 SRR035087.325296 454 Sequencing (SRP001808) 129 203 + Ala CGC [SRA]
>SRA1032885 SRR035088.121820 454 Sequencing (SRP001809) 182 108 - Ala CGC [SRA]
>SRA1036361 SRR035089.501597 454 Sequencing (SRP001810) 131 55 - Ala CGC [SRA]
>SRA1036520 SRR035089.536623 454 Sequencing (SRP001810) 131 55 - Ala CGC [SRA]
>SRA1048668 SRR035094.221533 454 Sequencing (SRP001815) 119 193 + Ala CGC [SRA]
>SRA1049481 SRR035095.83546 454 Sequencing (SRP001816) 112 36 - Ala CGC [SRA]
Identical group No.457401 (33 seq.)
>W1711088353 LSYU01000057 Gammaproteobacteria Marichromatium gracile [LSYU] 10609 10684 + Ala CGC [ENA] ¡û
>WENV011294 AACY020307896 Marine microbial communities from Global Ocean Sampling (GOS) 1359 1284 - Ala CGC [ENA]
>WENV180254552 OBEQ010640460 [OBEQ] groundwater metagenome; groundwater 507 432 - Ala CGC [ENA] ¢þ
>WENV180320621 OBKQ01001764 [OBKQ] soil metagenome; Clay 923 848 - Ala CGC [ENA] ¢þ
>WENV180342154 OBLJ01000053 [OBLJ] soil metagenome; Clay 10417 10342 - Ala CGC [ENA] ¢þ
>W141055248 AONC01000057 Gammaproteobacteria Imhoffiella purpurea AK35 [AONC] 2170 2095 - Ala CGC [ENA] ¡û
>WENV181186007 OEMK01000829 [OEMK] metagenome; 1998 1775 1700 - Ala CGC [ENA] ¢þ
>WENV181192638 OEPS010859919 [OEPS] soil metagenome; soil 248 173 - Ala CGC [ENA] ¢þ
>WENV181286210 OFGV01004151 [OFGV] soil metagenome; Clay 696 621 - Ala CGC [ENA] ¢þ
>WENV181291850 OFHD01003196 [OFHD] soil metagenome; Clay 1625 1550 - Ala CGC [ENA] ¢þ
>WENV181292012 OFHD01019188 [OFHD] soil metagenome; Clay 788 863 + Ala CGC [ENA] ¢þ
>WENV181292541 OFHF01000231 [OFHF] soil metagenome; Clay 3811 3736 - Ala CGC [ENA] ¢þ
>WENV181293098 OFHG01000023 [OFHG] soil metagenome; Clay 75214 75289 + Ala CGC [ENA] ¢þ
>WENV181294372 OFHH01000795 [OFHH] soil metagenome; Clay 1093 1018 - Ala CGC [ENA] ¢þ
>WENV181295367 OFHI01027845 [OFHI] soil metagenome; Clay 753 678 - Ala CGC [ENA] ¢þ
>WENV181296796 OFHK01000318 [OFHK] soil metagenome; Clay 4195 4120 - Ala CGC [ENA] ¢þ
>WENV181297891 OFHL01003341 [OFHL] soil metagenome; Clay 342 417 + Ala CGC [ENA] ¢þ
>W141148486 AWXZ01000017 Alphaproteobacteria Lutibaculum baratangense AMV1 [AWXZ] 123844 123769 - Ala CGC [ENA] ¡û
>WENV183685254 ORMF010823191 [ORMF] groundwater metagenome; groundwater 16365 16440 + Ala CGC [ENA] ¢þ
>WENV170382696 CETX01038234 [CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 117 192 + Ala CGC [ENA] ¢þ
>WENV170668421 LADL02003699 [LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole 1837 1762 - Ala CGC [ENA] ¢þ
>WENV170964336 MRWG01008506 [MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell 937 1012 + Ala CGC [ENA] ¢þ
>W1810760172 QPJY01000002 Gammaproteobacteria Thioalbus denitrificans DSM 26407 [QPJY] 642973 642898 - Ala CGC [ENA] ¡û
>W1810789269 QRGC01000003 Alphaproteobacteria Oceanicella sp. SM1341 [QRGC] 78970 78895 - Ala CGC [ENA] ¡û
>C151016265 CP007031 Gammaproteobacteria Marichromatium purpuratum 984 [CP007031] 3418592 3418667 + Ala CGC [Ensembl] ¡û
>SRA1048133 SRR035094.114380 454 Sequencing (SRP001815) 182 107 - Ala CGC [SRA]
>W11176006 AFWS01000004 Gammaproteobacteria Thiorhodovibrio frisius 970 [AFWS] 120105 120030 - Ala CGC [ENA] ¡û
>W11176115 AFWU01000010 Gammaproteobacteria Marichromatium purpuratum 984 [AFWU] 3393 3318 - Ala CGC [ENA] ¡û
>C131001754 CP003051 Gammaproteobacteria Thioflavicoccus mobilis 8321 [CP003051] 2513402 2513477 + Ala CGC [Ensembl] ¡û
>W1610922892 LSYU01000057 Gammaproteobacteria Marichromatium gracile [LSYU] 10609 10684 + Ala CGC [ENA] ¡û
>W1710553278 FOHL01000010 Alphaproteobacteria Oceanicella actignis xiamenense [FOHL] 76716 76641 - Ala CGC [ENA] ¡û
>W1710564173 FOQH01000005 Alphaproteobacteria Albimonas pacifica [FOQH] 158224 158299 + Ala CGC [ENA] ¡û
>W1710593450 FRDL01000011 Alphaproteobacteria Oceanicella actignis xiamenense [FRDL] 76703 76628 - Ala CGC [ENA] ¡û
Identical group No.548413 (3 seq.)
>WENV170612732 FUWD012673226 [FUWD] metagenome; unknown 218 143 - Ala CGC [ENA] ¢þ
>SRA1048100 SRR035094.108183 454 Sequencing (SRP001815) 228 153 - Ala CGC [SRA]
>SRA1048275 SRR035094.138200 454 Sequencing (SRP001815) 228 153 - Ala CGC [SRA]
Identical group No.548728 (4 seq.)
>WENV170621629 FUWD013066572 [FUWD] metagenome; unknown 540 466 - Ala CGC [ENA] ¢þ
>WENV170629812 FUWD013282545 [FUWD] metagenome; unknown 540 466 - Ala CGC [ENA] ¢þ
>SRA1041499 SRR035091.250626 454 Sequencing (SRP001812) 136 210 + Ala CGC [SRA]
>SRA1049029 SRR035094.319301 454 Sequencing (SRP001815) 187 113 - Ala CGC [SRA]
Identical group No.548918 (4 seq.)
>WENV170625270 FUWD013194611 [FUWD] metagenome; unknown 2225 2297 + Ala CGC [ENA] ¢þ
>WENV170633512 FUWD013397488 [FUWD] metagenome; unknown 2225 2297 + Ala CGC [ENA] ¢þ
>SRA1048866 SRR035094.266604 454 Sequencing (SRP001815) 118 46 - Ala CGC [SRA]
>SRA1050360 SRR035095.243470 454 Sequencing (SRP001816) 369 297 - Ala CGC [SRA]
Identical group No.612582 (1 seq.)
>SRA1048722 SRR035094.234959 454 Sequencing (SRP001815) 80 155 + Ala CGC [SRA]
Identical group No.654380 (6 seq.)
>WENV170608318 FUWD010916230 [FUWD] metagenome; unknown 424 350 - Ala CGC [ENA] ¢þ
>WENV170623587 FUWD013159222 [FUWD] metagenome; unknown 782 856 + Ala CGC [ENA] ¢þ
>WENV170631864 FUWD013368724 [FUWD] metagenome; unknown 782 856 + Ala CGC [ENA] ¢þ
>SRA1019110 SRR035082.403511 454 Sequencing (SRP001803) 142 216 + Ala CGC [SRA]
>SRA1026539 SRR035085.223727 454 Sequencing (SRP001806) 253 327 + Ala CGC [SRA]
>SRA1048944 SRR035094.293078 454 Sequencing (SRP001815) 183 257 + Ala CGC [SRA]
Identical group No.804937 (3 seq.)
>WENV170600769 FUWD010142081 [FUWD] metagenome; unknown 327 400 + Ala CGC [ENA] ¢þ
>SRA1044197 SRR035092.239526 454 Sequencing (SRP001813) 205 132 - Ala CGC [SRA]
>SRA1048293 SRR035094.140973 454 Sequencing (SRP001815) 326 253 - Ala CGC [SRA]
Identical group No.805086 (3 seq.)
>WENV170607682 FUWD010848121 [FUWD] metagenome; unknown 394 465 + Ala CGC [ENA] ¢þ
>SRA1047835 SRR035094.51105 454 Sequencing (SRP001815) 266 337 + Ala CGC [SRA]
>SRA1048427 SRR035094.171305 454 Sequencing (SRP001815) 119 190 + Ala CGC [SRA]
Identical group No.805232 (3 seq.)
>WENV170611612 FUWD012357544 [FUWD] metagenome; unknown 151 78 - Ala CGC [ENA] ¢þ
>SRA1018437 SRR035082.291360 454 Sequencing (SRP001803) 237 164 - Ala CGC [SRA]
>SRA1047676 SRR035094.18496 454 Sequencing (SRP001815) 277 350 + Ala CGC [SRA]
Identical group No.805467 (6 seq.)
>WENV170623331 FUWD013145885 [FUWD] metagenome; unknown 1032 959 - Ala CGC [ENA] ¢þ
>WENV170631594 FUWD013357832 [FUWD] metagenome; unknown 1032 959 - Ala CGC [ENA] ¢þ
>SRA1041906 SRR035091.314389 454 Sequencing (SRP001812) 56 129 + Ala CGC [SRA]
>SRA1042085 SRR035091.335756 454 Sequencing (SRP001812) 151 224 + Ala CGC [SRA]
>SRA1047899 SRR035094.64167 454 Sequencing (SRP001815) 111 184 + Ala CGC [SRA]
>SRA1048886 SRR035094.274608 454 Sequencing (SRP001815) 112 185 + Ala CGC [SRA]
Identical group No.824105 (1 seq.)
>SRA1048751 SRR035094.240585 454 Sequencing (SRP001815) 162 89 - Ala CGC [SRA]
Identical group No.824107 (1 seq.)
>SRA1048775 SRR035094.245777 454 Sequencing (SRP001815) 329 257 - Ala CGC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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