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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = CTC
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264004 (1 seq.)
>SRA1048321
SRR035094.146758
454 Sequencing (SRP001815)
508
434
-
Glu
CTC
[SRA]
Identical group No.453215 (4 seq.)
>WENV170605048
FUWD010443699
[FUWD] metagenome; unknown
285
360
+
Glu
CTC
[ENA]
¢þ
>SRA1025492
SRR035085.24301
454 Sequencing (SRP001806)
156
231
+
Glu
CTC
[SRA]
>SRA1025495
SRR035085.24960
454 Sequencing (SRP001806)
286
211
-
Glu
CTC
[SRA]
>SRA1047691
SRR035094.21848
454 Sequencing (SRP001815)
373
298
-
Glu
CTC
[SRA]
Identical group No.547696 (3 seq.)
>WENV170603360
FUWD010305329
[FUWD] metagenome; unknown
610
685
+
Glu
CTC
[ENA]
¢þ
>SRA1047991
SRR035094.83422
454 Sequencing (SRP001815)
84
11
-
Glu
CTC
[SRA]
>SRA1049395
SRR035095.70031
454 Sequencing (SRP001816)
128
203
+
Glu
CTC
[SRA]
Identical group No.612548 (1 seq.)
>SRA1048180
SRR035094.123554
454 Sequencing (SRP001815)
406
482
+
Glu
CTC
[SRA]
Identical group No.654278 (13 seq.)
>WENV181412628
OGCK01003108
[OGCK] hot springs metagenome; hot spring sediment
2979
3053
+
Glu
CTC
[ENA]
¢þ
>WENV183514318
OMKS01015995
[OMKS] sediment metagenome; hot spring sediment
3103
3029
-
Glu
CTC
[ENA]
¢þ
>WENV170619704
FUWD013019407
[FUWD] metagenome; unknown
5232
5306
+
Glu
CTC
[ENA]
¢þ
>WENV170627825
FUWD013237795
[FUWD] metagenome; unknown
5232
5306
+
Glu
CTC
[ENA]
¢þ
>SRA1025802
SRR035085.86401
454 Sequencing (SRP001806)
227
301
+
Glu
CTC
[SRA]
>SRA1030947
SRR035087.353014
454 Sequencing (SRP001808)
120
46
-
Glu
CTC
[SRA]
>SRA1031109
SRR035087.375194
454 Sequencing (SRP001808)
94
20
-
Glu
CTC
[SRA]
>SRA1048190
SRR035094.125621
454 Sequencing (SRP001815)
89
15
-
Glu
CTC
[SRA]
>SRA1048357
SRR035094.155999
454 Sequencing (SRP001815)
516
442
-
Glu
CTC
[SRA]
>SRA1048631
SRR035094.212526
454 Sequencing (SRP001815)
379
305
-
Glu
CTC
[SRA]
>SRA1049850
SRR035095.147453
454 Sequencing (SRP001816)
400
326
-
Glu
CTC
[SRA]
>SRA1050150
SRR035095.201207
454 Sequencing (SRP001816)
401
327
-
Glu
CTC
[SRA]
>SRA1050206
SRR035095.212049
454 Sequencing (SRP001816)
514
440
-
Glu
CTC
[SRA]
Identical group No.654284 (10 seq.)
>WENV170598591
FUWD010040546
[FUWD] metagenome; unknown
321
395
+
Glu
CTC
[ENA]
¢þ
>WENV170598592
FUWD010040550
[FUWD] metagenome; unknown
10
84
+
Glu
CTC
[ENA]
¢þ
>WENV170616594
FUWD012893040
[FUWD] metagenome; unknown
471
397
-
Glu
CTC
[ENA]
¢þ
>SRA1025834
SRR035085.91894
454 Sequencing (SRP001806)
223
149
-
Glu
CTC
[SRA]
>SRA1026100
SRR035085.143267
454 Sequencing (SRP001806)
221
147
-
Glu
CTC
[SRA]
>SRA1034596
SRR035089.131205
454 Sequencing (SRP001810)
323
397
+
Glu
CTC
[SRA]
>SRA1035262
SRR035089.269882
454 Sequencing (SRP001810)
481
407
-
Glu
CTC
[SRA]
>SRA1036298
SRR035089.490077
454 Sequencing (SRP001810)
129
55
-
Glu
CTC
[SRA]
>SRA1036515
SRR035089.535963
454 Sequencing (SRP001810)
10
84
+
Glu
CTC
[SRA]
>SRA1047731
SRR035094.31259
454 Sequencing (SRP001815)
285
211
-
Glu
CTC
[SRA]
Identical group No.654334 (11 seq.)
>WENV170626729
FUWD013229137
[FUWD] metagenome; unknown
6667
6741
+
Glu
CTC
[ENA]
¢þ
>WENV170629676
FUWD013277285
[FUWD] metagenome; unknown
9164
9238
+
Glu
CTC
[ENA]
¢þ
>SRA1018606
SRR035082.320645
454 Sequencing (SRP001803)
223
297
+
Glu
CTC
[SRA]
>SRA1026222
SRR035085.165819
454 Sequencing (SRP001806)
226
300
+
Glu
CTC
[SRA]
>SRA1026255
SRR035085.172990
454 Sequencing (SRP001806)
226
300
+
Glu
CTC
[SRA]
>SRA1032115
SRR035087.555403
454 Sequencing (SRP001808)
232
306
+
Glu
CTC
[SRA]
>SRA1032632
SRR035088.67648
454 Sequencing (SRP001809)
40
114
+
Glu
CTC
[SRA]
>SRA1034123
SRR035088.498464
454 Sequencing (SRP001809)
169
243
+
Glu
CTC
[SRA]
>SRA1043553
SRR035092.137396
454 Sequencing (SRP001813)
189
263
+
Glu
CTC
[SRA]
>SRA1047824
SRR035094.48858
454 Sequencing (SRP001815)
356
430
+
Glu
CTC
[SRA]
>SRA1048978
SRR035094.301169
454 Sequencing (SRP001815)
182
108
-
Glu
CTC
[SRA]
Identical group No.654599 (27 seq.)
>WENV170626768
FUWD013229350
[FUWD] metagenome; unknown
2293
2367
+
Glu
CTC
[ENA]
¢þ
>SRA1017537
SRR035082.158122
454 Sequencing (SRP001803)
71
145
+
Glu
CTC
[SRA]
>SRA1019306
SRR035082.433029
454 Sequencing (SRP001803)
127
198
+
Glu
CTC
[SRA]
>SRA1036177
SRR035089.463450
454 Sequencing (SRP001810)
136
210
+
Glu
CTC
[SRA]
>SRA1036623
SRR035089.565542
454 Sequencing (SRP001810)
254
180
-
Glu
CTC
[SRA]
>SRA1040560
SRR035091.115345
454 Sequencing (SRP001812)
371
297
-
Glu
CTC
[SRA]
>SRA1040982
SRR035091.177378
454 Sequencing (SRP001812)
31
105
+
Glu
CTC
[SRA]
>SRA1041075
SRR035091.192644
454 Sequencing (SRP001812)
143
217
+
Glu
CTC
[SRA]
>SRA1041829
SRR035091.301289
454 Sequencing (SRP001812)
18
92
+
Glu
CTC
[SRA]
>SRA1042238
SRR035091.360315
454 Sequencing (SRP001812)
230
156
-
Glu
CTC
[SRA]
>SRA1042439
SRR035091.386795
454 Sequencing (SRP001812)
95
21
-
Glu
CTC
[SRA]
>SRA1042825
SRR035091.451214
454 Sequencing (SRP001812)
151
77
-
Glu
CTC
[SRA]
>SRA1042898
SRR035091.463246
454 Sequencing (SRP001812)
351
277
-
Glu
CTC
[SRA]
>SRA1043171
SRR035092.63100
454 Sequencing (SRP001813)
166
240
+
Glu
CTC
[SRA]
>SRA1048461
SRR035094.178337
454 Sequencing (SRP001815)
22
96
+
Glu
CTC
[SRA]
>SRA1048582
SRR035094.203213
454 Sequencing (SRP001815)
169
243
+
Glu
CTC
[SRA]
>SRA1048947
SRR035094.295108
454 Sequencing (SRP001815)
254
328
+
Glu
CTC
[SRA]
>SRA1048965
SRR035094.298170
454 Sequencing (SRP001815)
255
329
+
Glu
CTC
[SRA]
>SRA1049717
SRR035095.124322
454 Sequencing (SRP001816)
397
323
-
Glu
CTC
[SRA]
>SRA1049941
SRR035095.163761
454 Sequencing (SRP001816)
252
326
+
Glu
CTC
[SRA]
>SRA1049970
SRR035095.170264
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050172
SRR035095.205889
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050396
SRR035095.252523
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050481
SRR035095.271638
454 Sequencing (SRP001816)
200
126
-
Glu
CTC
[SRA]
>SRA1050530
SRR035095.283863
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050547
SRR035095.289269
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
>SRA1050646
SRR035095.312598
454 Sequencing (SRP001816)
117
43
-
Glu
CTC
[SRA]
Identical group No.681553 (2 seq.)
>WENV183512439
OMKS01000479
[OMKS] sediment metagenome; hot spring sediment
36079
36153
+
Glu
CTC
[ENA]
¢þ
>SRA1048545
SRR035094.197029
454 Sequencing (SRP001815)
182
256
+
Glu
CTC
[SRA]
Identical group No.710662 (2 seq.)
>WENV170605100
FUWD010449297
[FUWD] metagenome; unknown
675
601
-
Glu
CTC
[ENA]
¢þ
>SRA1048291
SRR035094.140707
454 Sequencing (SRP001815)
293
219
-
Glu
CTC
[SRA]
Identical group No.710785 (6 seq.)
>WENV170607832
FUWD010859498
[FUWD] metagenome; unknown
80
6
-
Glu
CTC
[ENA]
¢þ
>SRA1033678
SRR035088.321108
454 Sequencing (SRP001809)
338
264
-
Glu
CTC
[SRA]
>SRA1047996
SRR035094.84833
454 Sequencing (SRP001815)
417
343
-
Glu
CTC
[SRA]
>SRA1048423
SRR035094.170493
454 Sequencing (SRP001815)
420
346
-
Glu
CTC
[SRA]
>SRA1048562
SRR035094.199087
454 Sequencing (SRP001815)
411
337
-
Glu
CTC
[SRA]
>SRA1053064
SRR035098.328902
454 Sequencing (SRP001819)
366
292
-
Glu
CTC
[SRA]
Identical group No.711162 (2 seq.)
>WENV170613078
FUWD012779358
[FUWD] metagenome; unknown
96
170
+
Glu
CTC
[ENA]
¢þ
>SRA1047783
SRR035094.41080
454 Sequencing (SRP001815)
218
292
+
Glu
CTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK