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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = CTT
HIT:
18 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272298 (11 seq.)
>WENV170617549
FUWD012929501
[FUWD] metagenome; unknown
212
288
+
Lys
CTT
[ENA]
¢þ
>WENV170620356
FUWD013030264
[FUWD] metagenome; unknown
1893
1817
-
Lys
CTT
[ENA]
¢þ
>WENV170625248
FUWD013194035
[FUWD] metagenome; unknown
2729
2805
+
Lys
CTT
[ENA]
¢þ
>WENV170628493
FUWD013247842
[FUWD] metagenome; unknown
1893
1817
-
Lys
CTT
[ENA]
¢þ
>WENV170633493
FUWD013396979
[FUWD] metagenome; unknown
2729
2805
+
Lys
CTT
[ENA]
¢þ
>SRA1025739
SRR035085.73644
454 Sequencing (SRP001806)
108
184
+
Lys
CTT
[SRA]
>SRA1036771
SRR035089.611671
454 Sequencing (SRP001810)
43
119
+
Lys
CTT
[SRA]
>SRA1048205
SRR035094.128844
454 Sequencing (SRP001815)
346
422
+
Lys
CTT
[SRA]
>SRA1049070
SRR035095.14204
454 Sequencing (SRP001816)
250
326
+
Lys
CTT
[SRA]
>SRA1049560
SRR035095.95725
454 Sequencing (SRP001816)
222
298
+
Lys
CTT
[SRA]
>SRA1050309
SRR035095.234825
454 Sequencing (SRP001816)
78
154
+
Lys
CTT
[SRA]
Identical group No.272302 (13 seq.)
>WENV170616053
FUWD012875755
[FUWD] metagenome; unknown
560
484
-
Lys
CTT
[ENA]
¢þ
>WENV170616589
FUWD012892690
[FUWD] metagenome; unknown
266
342
+
Lys
CTT
[ENA]
¢þ
>WENV170624203
FUWD013177659
[FUWD] metagenome; unknown
97
21
-
Lys
CTT
[ENA]
¢þ
>WENV170632486
FUWD013383366
[FUWD] metagenome; unknown
97
21
-
Lys
CTT
[ENA]
¢þ
>SRA1017973
SRR035082.223176
454 Sequencing (SRP001803)
129
53
-
Lys
CTT
[SRA]
>SRA1018287
SRR035082.269545
454 Sequencing (SRP001803)
266
342
+
Lys
CTT
[SRA]
>SRA1025773
SRR035085.80455
454 Sequencing (SRP001806)
172
248
+
Lys
CTT
[SRA]
>SRA1026215
SRR035085.164453
454 Sequencing (SRP001806)
200
276
+
Lys
CTT
[SRA]
>SRA1026422
SRR035085.204921
454 Sequencing (SRP001806)
201
277
+
Lys
CTT
[SRA]
>SRA1029870
SRR035087.194931
454 Sequencing (SRP001808)
159
235
+
Lys
CTT
[SRA]
>SRA1032585
SRR035088.54066
454 Sequencing (SRP001809)
37
113
+
Lys
CTT
[SRA]
>SRA1034441
SRR035089.96844
454 Sequencing (SRP001810)
355
279
-
Lys
CTT
[SRA]
>SRA1048627
SRR035094.211844
454 Sequencing (SRP001815)
336
260
-
Lys
CTT
[SRA]
Identical group No.272365 (2 seq.)
>SRA1026161
SRR035085.156162
454 Sequencing (SRP001806)
66
141
+
Lys
CTT
[SRA]
>SRA1048734
SRR035094.237316
454 Sequencing (SRP001815)
183
256
+
Lys
CTT
[SRA]
Identical group No.358862 (3 seq.)
>WENV170623716
FUWD013169678
[FUWD] metagenome; unknown
1264
1190
-
Lys
CTT
[ENA]
¢þ
>WENV170631738
FUWD013363628
[FUWD] metagenome; unknown
2491
2565
+
Lys
CTT
[ENA]
¢þ
>SRA1048712
SRR035094.233532
454 Sequencing (SRP001815)
99
175
+
Lys
CTT
[SRA]
Identical group No.415577 (1 seq.)
>SRA1048658
SRR035094.218819
454 Sequencing (SRP001815)
203
279
+
Lys
CTT
[SRA]
Identical group No.415581 (1 seq.)
>SRA1048714
SRR035094.233699
454 Sequencing (SRP001815)
81
156
+
Lys
CTT
[SRA]
Identical group No.453503 (9 seq.)
>WENV170620367
FUWD013030490
[FUWD] metagenome; unknown
7479
7551
+
Lys
CTT
[ENA]
¢þ
>WENV170628504
FUWD013248060
[FUWD] metagenome; unknown
7479
7551
+
Lys
CTT
[ENA]
¢þ
>SRA1029385
SRR035087.119778
454 Sequencing (SRP001808)
428
354
-
Lys
CTT
[SRA]
>SRA1034409
SRR035089.84085
454 Sequencing (SRP001810)
255
327
+
Lys
CTT
[SRA]
>SRA1040406
SRR035091.92908
454 Sequencing (SRP001812)
313
241
-
Lys
CTT
[SRA]
>SRA1040663
SRR035091.129589
454 Sequencing (SRP001812)
313
241
-
Lys
CTT
[SRA]
>SRA1040958
SRR035091.174396
454 Sequencing (SRP001812)
186
114
-
Lys
CTT
[SRA]
>SRA1042781
SRR035091.446419
454 Sequencing (SRP001812)
278
350
+
Lys
CTT
[SRA]
>SRA1048236
SRR035094.132370
454 Sequencing (SRP001815)
225
153
-
Lys
CTT
[SRA]
Identical group No.463827 (18 seq.)
>W131157516
AQSJ01000194
Unclassified
Aminicenantes bacterium SCGC AAA252-F08 OP8 bacterium SCGC AAA252-F08 [AQSJ]
2221
2147
-
Lys
CTT
[ENA]
¡û
>W131157727
AQSP01000140
Unclassified
Aminicenantes bacterium SCGC AAA252-A02 OP8 bacterium SCGC AAA252-A02 [AQSP]
75497
75571
+
Lys
CTT
[ENA]
¡û
>W131192438
ASLI01000010
Unclassified
Aminicenantes bacterium SCGC AAA252-L02 OP8 bacterium SCGC AAA252-L02 [ASLI]
25731
25805
+
Lys
CTT
[ENA]
¡û
>W131192461
ASLJ01000040
Unclassified
Aminicenantes bacterium SCGC AAA252-O09 OP8 bacterium SCGC AAA252-O09 [ASLJ]
791
717
-
Lys
CTT
[ENA]
¡û
>W131192508
ASLM01000038
Unclassified
Aminicenantes bacterium SCGC AAA252-O19 OP8 bacterium SCGC AAA252-O19 [ASLM]
1862
1936
+
Lys
CTT
[ENA]
¡û
>W131193382
ASOD01000075
Unclassified
Aminicenantes bacterium SCGC AAA252-O03 OP8 bacterium SCGC AAA252-O03 [ASOD]
592
518
-
Lys
CTT
[ENA]
¡û
>W131193465
ASOJ01000044
Unclassified
Aminicenantes bacterium SCGC AAA252-G06 OP8 bacterium SCGC AAA252-G06 [ASOJ]
9897
9971
+
Lys
CTT
[ENA]
¡û
>W131193487
ASOK01000086
Unclassified
Aminicenantes bacterium SCGC AAA252-P13 OP8 bacterium SCGC AAA252-P13 [ASOK]
3963
4037
+
Lys
CTT
[ENA]
¡û
>W131193524
ASOM01000066
Unclassified
Aminicenantes bacterium SCGC AAA252-I14 OP8 bacterium SCGC AAA252-I14 [ASOM]
2461
2387
-
Lys
CTT
[ENA]
¡û
>W131193564
ASOO01000007
Unclassified
Aminicenantes bacterium SCGC AAA252-J21 OP8 bacterium SCGC AAA252-J21 [ASOO]
32583
32509
-
Lys
CTT
[ENA]
¡û
>W131193588
ASOP01000024
Unclassified
Aminicenantes bacterium SCGC AAA252-K06 OP8 bacterium SCGC AAA252-K06 [ASOP]
864
792
-
Lys
CTT
[ENA]
¡û
>W131193614
ASOQ01000025
Unclassified
Aminicenantes bacterium SCGC AAA252-K07 OP8 bacterium SCGC AAA252-K07 [ASOQ]
2268
2194
-
Lys
CTT
[ENA]
¡û
>W131193628
ASOR01000014
Unclassified
Aminicenantes bacterium SCGC AAA252-K18 OP8 bacterium SCGC AAA252-K18 [ASOR]
8313
8239
-
Lys
CTT
[ENA]
¡û
>W131193637
ASOS01000005
Unclassified
Aminicenantes bacterium SCGC AAA252-D06 OP8 bacterium SCGC AAA252-D06 [ASOS]
74142
74216
+
Lys
CTT
[ENA]
¡û
>W131193680
ASOT01000026
Unclassified
Aminicenantes bacterium SCGC AAA252-L10 OP8 bacterium SCGC AAA252-L10 [ASOT]
23210
23284
+
Lys
CTT
[ENA]
¡û
>W141139564
AWNU01000020
Unclassified
Aminicenantes bacterium JGI OTU-2 [AWNU]
2221
2147
-
Lys
CTT
[ENA]
¡û
>W141139590
AWNV01000005
Unclassified
Candidatus Aminicenans sakinawicola sakinawicola JGI OTU-1 [AWNV]
75497
75571
+
Lys
CTT
[ENA]
¡û
>SRA1048603
SRR035094.208439
454 Sequencing (SRP001815)
106
33
-
Lys
CTT
[SRA]
Identical group No.548417 (3 seq.)
>WENV170612754
FUWD012680159
[FUWD] metagenome; unknown
136
211
+
Lys
CTT
[ENA]
¢þ
>SRA1048624
SRR035094.211485
454 Sequencing (SRP001815)
415
490
+
Lys
CTT
[SRA]
>SRA1050010
SRR035095.176157
454 Sequencing (SRP001816)
363
288
-
Lys
CTT
[SRA]
Identical group No.548627 (2 seq.)
>WENV170619367
FUWD013011507
[FUWD] metagenome; unknown
153
78
-
Lys
CTT
[ENA]
¢þ
>SRA1048443
SRR035094.174644
454 Sequencing (SRP001815)
204
129
-
Lys
CTT
[SRA]
Identical group No.573515 (2 seq.)
>SRA1040662
SRR035091.129477
454 Sequencing (SRP001812)
299
374
+
Lys
CTT
[SRA]
>SRA1047980
SRR035094.80629
454 Sequencing (SRP001815)
205
130
-
Lys
CTT
[SRA]
Identical group No.612540 (1 seq.)
>SRA1048096
SRR035094.107766
454 Sequencing (SRP001815)
57
132
+
Lys
CTT
[SRA]
Identical group No.612550 (1 seq.)
>SRA1048203
SRR035094.128791
454 Sequencing (SRP001815)
144
219
+
Lys
CTT
[SRA]
Identical group No.612574 (2 seq.)
>SRA1048643
SRR035094.215335
454 Sequencing (SRP001815)
138
211
+
Lys
CTT
[SRA]
>SRA1048650
SRR035094.216300
454 Sequencing (SRP001815)
138
211
+
Lys
CTT
[SRA]
Identical group No.612580 (1 seq.)
>SRA1048713
SRR035094.233542
454 Sequencing (SRP001815)
250
323
+
Lys
CTT
[SRA]
Identical group No.779878 (10 seq.)
>WENV170626804
FUWD013229616
[FUWD] metagenome; unknown
3201
3128
-
Lys
CTT
[ENA]
¢þ
>SRA1034702
SRR035089.155824
454 Sequencing (SRP001810)
442
369
-
Lys
CTT
[SRA]
>SRA1040139
SRR035091.46446
454 Sequencing (SRP001812)
206
279
+
Lys
CTT
[SRA]
>SRA1040963
SRR035091.175134
454 Sequencing (SRP001812)
159
232
+
Lys
CTT
[SRA]
>SRA1041104
SRR035091.196976
454 Sequencing (SRP001812)
159
232
+
Lys
CTT
[SRA]
>SRA1041683
SRR035091.277877
454 Sequencing (SRP001812)
316
243
-
Lys
CTT
[SRA]
>SRA1041936
SRR035091.316663
454 Sequencing (SRP001812)
159
232
+
Lys
CTT
[SRA]
>SRA1042093
SRR035091.337114
454 Sequencing (SRP001812)
501
428
-
Lys
CTT
[SRA]
>SRA1047861
SRR035094.56725
454 Sequencing (SRP001815)
122
49
-
Lys
CTT
[SRA]
>SRA1048226
SRR035094.130390
454 Sequencing (SRP001815)
121
48
-
Lys
CTT
[SRA]
Identical group No.804939 (11 seq.)
>WENV170600780
FUWD010142391
[FUWD] metagenome; unknown
73
2
-
Lys
CTT
[ENA]
¢þ
>SRA1041852
SRR035091.304846
454 Sequencing (SRP001812)
130
57
-
Lys
CTT
[SRA]
>SRA1047839
SRR035094.51526
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1047857
SRR035094.56510
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048016
SRR035094.89414
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048248
SRR035094.134307
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048419
SRR035094.169337
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048512
SRR035094.190976
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048594
SRR035094.205125
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048728
SRR035094.235954
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
>SRA1048748
SRR035094.239901
454 Sequencing (SRP001815)
148
75
-
Lys
CTT
[SRA]
Identical group No.805395 (4 seq.)
>WENV170620743
FUWD013038065
[FUWD] metagenome; unknown
72
1
-
Lys
CTT
[ENA]
¢þ
>WENV170628884
FUWD013255263
[FUWD] metagenome; unknown
72
1
-
Lys
CTT
[ENA]
¢þ
>SRA1044406
SRR035092.274748
454 Sequencing (SRP001813)
124
195
+
Lys
CTT
[SRA]
>SRA1048634
SRR035094.213243
454 Sequencing (SRP001815)
436
507
+
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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