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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = GAG
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.72792 (5 seq.)
>WENV170618667
FUWD012981096
[FUWD] metagenome; unknown
90
2
-
Leu
GAG
[ENA]
¢þ
>WENV170626458
FUWD013223027
[FUWD] metagenome; unknown
2138
2050
-
Leu
GAG
[ENA]
¢þ
>SRA1035923
SRR035089.404310
454 Sequencing (SRP001810)
185
97
-
Leu
GAG
[SRA]
>SRA1048061
SRR035094.100384
454 Sequencing (SRP001815)
181
93
-
Leu
GAG
[SRA]
>SRA1048893
SRR035094.277792
454 Sequencing (SRP001815)
111
199
+
Leu
GAG
[SRA]
Identical group No.79276 (10 seq.)
>WENV170620587
FUWD013034587
[FUWD] metagenome; unknown
1092
1004
-
Leu
GAG
[ENA]
¢þ
>WENV170626721
FUWD013229103
[FUWD] metagenome; unknown
2289
2201
-
Leu
GAG
[ENA]
¢þ
>WENV170628727
FUWD013251961
[FUWD] metagenome; unknown
1092
1004
-
Leu
GAG
[ENA]
¢þ
>WENV170629211
FUWD013264420
[FUWD] metagenome; unknown
6251
6163
-
Leu
GAG
[ENA]
¢þ
>SRA1017261
SRR035082.107261
454 Sequencing (SRP001803)
298
210
-
Leu
GAG
[SRA]
>SRA1018772
SRR035082.345574
454 Sequencing (SRP001803)
36
124
+
Leu
GAG
[SRA]
>SRA1043860
SRR035092.186949
454 Sequencing (SRP001813)
168
256
+
Leu
GAG
[SRA]
>SRA1044121
SRR035092.227343
454 Sequencing (SRP001813)
71
159
+
Leu
GAG
[SRA]
>SRA1044245
SRR035092.247622
454 Sequencing (SRP001813)
148
60
-
Leu
GAG
[SRA]
>SRA1047749
SRR035094.34837
454 Sequencing (SRP001815)
40
128
+
Leu
GAG
[SRA]
Identical group No.83992 (1 seq.)
>SRA1048059
SRR035094.100224
454 Sequencing (SRP001815)
134
221
+
Leu
GAG
[SRA]
Identical group No.84000 (1 seq.)
>SRA1048533
SRR035094.194685
454 Sequencing (SRP001815)
428
516
+
Leu
GAG
[SRA]
Identical group No.84001 (1 seq.)
>SRA1048780
SRR035094.246994
454 Sequencing (SRP001815)
256
344
+
Leu
GAG
[SRA]
Identical group No.112556 (9 seq.)
>WENV170622218
FUWD013093293
[FUWD] metagenome; unknown
82
167
+
Leu
GAG
[ENA]
¢þ
>WENV170630421
FUWD013308169
[FUWD] metagenome; unknown
82
167
+
Leu
GAG
[ENA]
¢þ
>SRA1017213
SRR035082.99835
454 Sequencing (SRP001803)
82
167
+
Leu
GAG
[SRA]
>SRA1032697
SRR035088.81300
454 Sequencing (SRP001809)
78
163
+
Leu
GAG
[SRA]
>SRA1034297
SRR035089.51871
454 Sequencing (SRP001810)
127
42
-
Leu
GAG
[SRA]
>SRA1034959
SRR035089.206832
454 Sequencing (SRP001810)
290
375
+
Leu
GAG
[SRA]
>SRA1035167
SRR035089.251047
454 Sequencing (SRP001810)
454
369
-
Leu
GAG
[SRA]
>SRA1040872
SRR035091.162145
454 Sequencing (SRP001812)
24
109
+
Leu
GAG
[SRA]
>SRA1048373
SRR035094.159602
454 Sequencing (SRP001815)
136
221
+
Leu
GAG
[SRA]
Identical group No.112562 (8 seq.)
>WENV170627197
FUWD013231994
[FUWD] metagenome; unknown
14871
14785
-
Leu
GAG
[ENA]
¢þ
>WENV170632582
FUWD013384729
[FUWD] metagenome; unknown
14871
14785
-
Leu
GAG
[ENA]
¢þ
>SRA1029475
SRR035087.133174
454 Sequencing (SRP001808)
17
103
+
Leu
GAG
[SRA]
>SRA1031995
SRR035087.528302
454 Sequencing (SRP001808)
148
234
+
Leu
GAG
[SRA]
>SRA1034435
SRR035089.94062
454 Sequencing (SRP001810)
428
342
-
Leu
GAG
[SRA]
>SRA1034834
SRR035089.182807
454 Sequencing (SRP001810)
391
477
+
Leu
GAG
[SRA]
>SRA1048199
SRR035094.127835
454 Sequencing (SRP001815)
92
178
+
Leu
GAG
[SRA]
>SRA1048694
SRR035094.229126
454 Sequencing (SRP001815)
165
79
-
Leu
GAG
[SRA]
Identical group No.118379 (5 seq.)
>WENV170605125
FUWD010451742
[FUWD] metagenome; unknown
181
267
+
Leu
GAG
[ENA]
¢þ
>SRA1031935
SRR035087.515567
454 Sequencing (SRP001808)
164
78
-
Leu
GAG
[SRA]
>SRA1033321
SRR035088.223543
454 Sequencing (SRP001809)
234
148
-
Leu
GAG
[SRA]
>SRA1048997
SRR035094.307632
454 Sequencing (SRP001815)
132
46
-
Leu
GAG
[SRA]
>SRA1049993
SRR035095.173437
454 Sequencing (SRP001816)
57
143
+
Leu
GAG
[SRA]
Identical group No.131828 (8 seq.)
>WENV170624453
FUWD013181970
[FUWD] metagenome; unknown
3116
3030
-
Leu
GAG
[ENA]
¢þ
>WENV170632740
FUWD013386831
[FUWD] metagenome; unknown
3116
3030
-
Leu
GAG
[ENA]
¢þ
>SRA1048019
SRR035094.91215
454 Sequencing (SRP001815)
72
158
+
Leu
GAG
[SRA]
>SRA1048255
SRR035094.135450
454 Sequencing (SRP001815)
161
247
+
Leu
GAG
[SRA]
>SRA1049577
SRR035095.97396
454 Sequencing (SRP001816)
259
345
+
Leu
GAG
[SRA]
>SRA1049609
SRR035095.104519
454 Sequencing (SRP001816)
350
264
-
Leu
GAG
[SRA]
>SRA1049722
SRR035095.126938
454 Sequencing (SRP001816)
368
454
+
Leu
GAG
[SRA]
>SRA1050601
SRR035095.299655
454 Sequencing (SRP001816)
150
236
+
Leu
GAG
[SRA]
Identical group No.145021 (1 seq.)
>SRA1047648
SRR035094.6709
454 Sequencing (SRP001815)
387
301
-
Leu
GAG
[SRA]
Identical group No.145028 (1 seq.)
>SRA1048088
SRR035094.106676
454 Sequencing (SRP001815)
106
22
-
Leu
GAG
[SRA]
Identical group No.145040 (1 seq.)
>SRA1048702
SRR035094.230874
454 Sequencing (SRP001815)
102
17
-
Leu
GAG
[SRA]
Identical group No.145042 (1 seq.)
>SRA1049001
SRR035094.308997
454 Sequencing (SRP001815)
14
98
+
Leu
GAG
[SRA]
Identical group No.174314 (1 seq.)
>SRA1048989
SRR035094.305271
454 Sequencing (SRP001815)
339
254
-
Leu
GAG
[SRA]
Identical group No.189770 (7 seq.)
>WENV180346470
OBLN01110158
[OBLN] sediment metagenome; sediment
298
216
-
Leu
GAG
[ENA]
¢þ
>WENV170678153
LDZT01011564
[LDZT] terrestrial metagenome; oil reservoir sample SB1
18294
18377
+
Leu
GAG
[ENA]
¢þ
>WENV170679402
LDZU01010436
[LDZU] terrestrial metagenome; oil reservoir sample SB2
6100
6017
-
Leu
GAG
[ENA]
¢þ
>WENV170699365
LGVF01536975
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
347
264
-
Leu
GAG
[ENA]
¢þ
>SRA1047803
SRR035094.43937
454 Sequencing (SRP001815)
309
392
+
Leu
GAG
[SRA]
>W1610613387
LGFU01000004
Chloroflexota
Anaerolinea thermophila [LGFU]
18294
18377
+
Leu
GAG
[ENA]
¡û
>W1710734559
LGFU01000004
Chloroflexota
Anaerolinea thermophila [LGFU]
18294
18377
+
Leu
GAG
[ENA]
¡û
Identical group No.198106 (3 seq.)
>WENV170608216
FUWD010903174
[FUWD] metagenome; unknown
201
117
-
Leu
GAG
[ENA]
¢þ
>SRA1048538
SRR035094.196159
454 Sequencing (SRP001815)
211
127
-
Leu
GAG
[SRA]
>SRA1050011
SRR035095.176477
454 Sequencing (SRP001816)
60
144
+
Leu
GAG
[SRA]
Identical group No.198316 (5 seq.)
>WENV170627298
FUWD013232509
[FUWD] metagenome; unknown
9510
9428
-
Leu
GAG
[ENA]
¢þ
>SRA1018503
SRR035082.301683
454 Sequencing (SRP001803)
443
361
-
Leu
GAG
[SRA]
>SRA1040271
SRR035091.70396
454 Sequencing (SRP001812)
438
356
-
Leu
GAG
[SRA]
>SRA1041480
SRR035091.248411
454 Sequencing (SRP001812)
438
520
+
Leu
GAG
[SRA]
>SRA1048517
SRR035094.192067
454 Sequencing (SRP001815)
209
127
-
Leu
GAG
[SRA]
Identical group No.210169 (1 seq.)
>SRA1048012
SRR035094.87560
454 Sequencing (SRP001815)
119
35
-
Leu
GAG
[SRA]
Identical group No.210171 (1 seq.)
>SRA1048438
SRR035094.174266
454 Sequencing (SRP001815)
385
301
-
Leu
GAG
[SRA]
Identical group No.210176 (1 seq.)
>SRA1048595
SRR035094.205209
454 Sequencing (SRP001815)
292
376
+
Leu
GAG
[SRA]
Identical group No.226329 (1 seq.)
>SRA1047727
SRR035094.30891
454 Sequencing (SRP001815)
440
357
-
Leu
GAG
[SRA]
Identical group No.263992 (1 seq.)
>SRA1047914
SRR035094.67032
454 Sequencing (SRP001815)
353
276
-
Leu
GAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK