Home | tRNADB-CE : tRNA gene database curated manually by experts

This is the navigation skips to jump to main contents

Jump to main contents.

Top | Keyword | BLAST | Download | HOW TO USE

tRNA genes clustered and arranged according to each identical group

454 Sequencing (SRP001815)

Anticodon = GCA

HIT: 35 Group(s).

Download Sequence	Representative sequence of each cluster
View ClustalW result

Sort by Identical group No.

Sort by the number of tRNAs in the Identical group

Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision
Identical group No.264000 (1 seq.)
	>SRA1048104	SRR035094.109278	454 Sequencing (SRP001815)		132	209	+	Cys	GCA	[SRA]
Identical group No.358309 (3 seq.)
	>WENV170611809	FUWD012402463	[FUWD] metagenome; unknown		56	132	+	Cys	GCA	[ENA]	◯
	>SRA1024634	SRR035084.365273	454 Sequencing (SRP001805)		360	436	+	Cys	GCA	[SRA]
	>SRA1047967	SRR035094.77623	454 Sequencing (SRP001815)		66	142	+	Cys	GCA	[SRA]
Identical group No.453520 (14 seq.)
	>WENV170627200	FUWD013231996	[FUWD] metagenome; unknown		5992	6064	+	Cys	GCA	[ENA]	◯
	>WENV170632587	FUWD013384757	[FUWD] metagenome; unknown		5992	6064	+	Cys	GCA	[ENA]	◯
	>SRA1018909	SRR035082.368689	454 Sequencing (SRP001803)		370	298	-	Cys	GCA	[SRA]
	>SRA1032600	SRR035088.59759	454 Sequencing (SRP001809)		136	64	-	Cys	GCA	[SRA]
	>SRA1033791	SRR035088.356215	454 Sequencing (SRP001809)		112	184	+	Cys	GCA	[SRA]
	>SRA1034469	SRR035089.101875	454 Sequencing (SRP001810)		9	81	+	Cys	GCA	[SRA]
	>SRA1034475	SRR035089.103913	454 Sequencing (SRP001810)		305	233	-	Cys	GCA	[SRA]
	>SRA1039967	SRR035091.690	454 Sequencing (SRP001812)		158	86	-	Cys	GCA	[SRA]
	>SRA1041543	SRR035091.258346	454 Sequencing (SRP001812)		62	134	+	Cys	GCA	[SRA]
	>SRA1042158	SRR035091.347951	454 Sequencing (SRP001812)		216	288	+	Cys	GCA	[SRA]
	>SRA1043871	SRR035092.188451	454 Sequencing (SRP001813)		162	234	+	Cys	GCA	[SRA]
	>SRA1047669	SRR035094.17020	454 Sequencing (SRP001815)		57	129	+	Cys	GCA	[SRA]
	>SRA1047792	SRR035094.42075	454 Sequencing (SRP001815)		58	130	+	Cys	GCA	[SRA]
	>SRA1049725	SRR035095.127642	454 Sequencing (SRP001816)		244	172	-	Cys	GCA	[SRA]
Identical group No.548421 (4 seq.)
	>WENV170612771	FUWD012685169	[FUWD] metagenome; unknown		94	19	-	Cys	GCA	[ENA]	◯
	>SRA1048690	SRR035094.228454	454 Sequencing (SRP001815)		104	29	-	Cys	GCA	[SRA]
	>SRA1049004	SRR035094.311318	454 Sequencing (SRP001815)		104	29	-	Cys	GCA	[SRA]
	>SRA1049019	SRR035094.316028	454 Sequencing (SRP001815)		104	29	-	Cys	GCA	[SRA]
Identical group No.612525 (1 seq.)
	>SRA1047869	SRR035094.58949	454 Sequencing (SRP001815)		104	32	-	Cys	GCA	[SRA]
Identical group No.612557 (1 seq.)
	>SRA1048352	SRR035094.154142	454 Sequencing (SRP001815)		258	331	+	Cys	GCA	[SRA]
Identical group No.612565 (2 seq.)
	>SRA1048535	SRR035094.195644	454 Sequencing (SRP001815)		222	297	+	Cys	GCA	[SRA]
	>SRA1048927	SRR035094.288221	454 Sequencing (SRP001815)		222	297	+	Cys	GCA	[SRA]
Identical group No.612611 (1 seq.)
	>SRA1048219	SRR035094.130082	454 Sequencing (SRP001815)		243	316	+	Cys	GCA	[SRA]
Identical group No.654424 (11 seq.)
	>WENV170625935	FUWD013209829	[FUWD] metagenome; unknown		3135	3207	+	Cys	GCA	[ENA]	◯
	>WENV170634149	FUWD013411312	[FUWD] metagenome; unknown		3135	3207	+	Cys	GCA	[ENA]	◯
	>SRA1016721	SRR035082.13854	454 Sequencing (SRP001803)		127	55	-	Cys	GCA	[SRA]
	>SRA1018399	SRR035082.284301	454 Sequencing (SRP001803)		270	198	-	Cys	GCA	[SRA]
	>SRA1018719	SRR035082.337597	454 Sequencing (SRP001803)		211	283	+	Cys	GCA	[SRA]
	>SRA1019745	SRR035082.516989	454 Sequencing (SRP001803)		105	177	+	Cys	GCA	[SRA]
	>SRA1031561	SRR035087.450003	454 Sequencing (SRP001808)		311	239	-	Cys	GCA	[SRA]
	>SRA1034239	SRR035089.33060	454 Sequencing (SRP001810)		396	324	-	Cys	GCA	[SRA]
	>SRA1043282	SRR035092.89199	454 Sequencing (SRP001813)		21	93	+	Cys	GCA	[SRA]
	>SRA1044479	SRR035092.286516	454 Sequencing (SRP001813)		21	93	+	Cys	GCA	[SRA]
	>SRA1048590	SRR035094.204406	454 Sequencing (SRP001815)		219	147	-	Cys	GCA	[SRA]
Identical group No.654446 (3 seq.)
	>WENV170612244	FUWD012551382	[FUWD] metagenome; unknown		202	128	-	Cys	GCA	[ENA]	◯
	>SRA1034423	SRR035089.90255	454 Sequencing (SRP001810)		202	128	-	Cys	GCA	[SRA]
	>SRA1048289	SRR035094.139923	454 Sequencing (SRP001815)		257	331	+	Cys	GCA	[SRA]
Identical group No.686161 (19 seq.)
	>W1711315145	MAVQ01000046	Thermodesulfobacteriota	Desulfobacterales bacterium PC51MH44 [MAVQ]	3507	3433	-	Cys	GCA	[ENA]	○
	>W1711315163	MAVQ01000565	Thermodesulfobacteriota	Desulfobacterales bacterium PC51MH44 [MAVQ]	77	3	-	Cys	GCA	[ENA]	○
	>W1711317606	MAXL01000143	Thermodesulfobacteriota	Desulfobacterales bacterium S5133MH16 [MAXL]	1547	1621	+	Cys	GCA	[ENA]	○
	>W1711317644	MAXM01000134	Thermodesulfobacteriota	Desulfobacterales bacterium C00003106 [MAXM]	8450	8524	+	Cys	GCA	[ENA]	○
	>WENV180099284	NKAJ01001302	[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea		5067	4993	-	Cys	GCA	[ENA]	◯
	>WENV180297966	OBJA01125565	[OBJA] soil metagenome; sediment, water from around vicinity		95	21	-	Cys	GCA	[ENA]	◯
	>WENV183704468	PDWI01000280	[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z		69429	69503	+	Cys	GCA	[ENA]	◯
	>WENV170004747	AHKK01011807	[AHKK] sediment metagenome; Nyegga cold-seep field located at the mid-Norwegian margin on the northern edge of the Storegga		228	154	-	Cys	GCA	[ENA]	◯
	>WENV170692758	LGOV01026966	[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge		8450	8524	+	Cys	GCA	[ENA]	◯
	>WENV170693199	LGOV01139365	[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge		151	225	+	Cys	GCA	[ENA]	◯
	>WENV170693892	LGVD01000067	[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at		793	719	-	Cys	GCA	[ENA]	◯
	>WENV170695301	LGVE01073274	[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		2708	2782	+	Cys	GCA	[ENA]	◯
	>WENV170696846	LGVF01054448	[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		1520	1446	-	Cys	GCA	[ENA]	◯
	>WENV170697075	LGVF01078372	[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		68	142	+	Cys	GCA	[ENA]	◯
	>WENV170697283	LGVF01105765	[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		467	541	+	Cys	GCA	[ENA]	◯
	>WENV170697596	LGVF01159280	[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		605	679	+	Cys	GCA	[ENA]	◯
	>WENV170698415	LGVF01331920	[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		1788	1714	-	Cys	GCA	[ENA]	◯
	>WENV170699130	LGVF01486188	[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge		355	281	-	Cys	GCA	[ENA]	◯
	>SRA1047711	SRR035094.26380	454 Sequencing (SRP001815)		370	444	+	Cys	GCA	[SRA]
Identical group No.710777 (2 seq.)
	>WENV170607748	FUWD010853661	[FUWD] metagenome; unknown		328	401	+	Cys	GCA	[ENA]	◯
	>SRA1047853	SRR035094.54881	454 Sequencing (SRP001815)		136	63	-	Cys	GCA	[SRA]
Identical group No.711109 (3 seq.)
	>WENV170612660	FUWD012653062	[FUWD] metagenome; unknown		301	372	+	Cys	GCA	[ENA]	◯
	>SRA1044458	SRR035092.283205	454 Sequencing (SRP001813)		302	373	+	Cys	GCA	[SRA]
	>SRA1047799	SRR035094.43270	454 Sequencing (SRP001815)		358	429	+	Cys	GCA	[SRA]
Identical group No.711415 (5 seq.)
	>WENV170622554	FUWD013109371	[FUWD] metagenome; unknown		1179	1105	-	Cys	GCA	[ENA]	◯
	>WENV170630770	FUWD013323538	[FUWD] metagenome; unknown		1179	1105	-	Cys	GCA	[ENA]	◯
	>SRA1033943	SRR035088.417213	454 Sequencing (SRP001809)		164	238	+	Cys	GCA	[SRA]
	>SRA1041230	SRR035091.217643	454 Sequencing (SRP001812)		424	350	-	Cys	GCA	[SRA]
	>SRA1048795	SRR035094.250065	454 Sequencing (SRP001815)		337	263	-	Cys	GCA	[SRA]
Identical group No.711567 (6 seq.)
	>WENV170627233	FUWD013232291	[FUWD] metagenome; unknown		8115	8189	+	Cys	GCA	[ENA]	◯
	>WENV170633865	FUWD013404306	[FUWD] metagenome; unknown		8115	8189	+	Cys	GCA	[ENA]	◯
	>SRA1016704	SRR035082.8649	454 Sequencing (SRP001803)		141	215	+	Cys	GCA	[SRA]
	>SRA1047864	SRR035094.57677	454 Sequencing (SRP001815)		494	420	-	Cys	GCA	[SRA]
	>SRA1048052	SRR035094.98834	454 Sequencing (SRP001815)		106	32	-	Cys	GCA	[SRA]
	>SRA1048425	SRR035094.170666	454 Sequencing (SRP001815)		76	150	+	Cys	GCA	[SRA]
Identical group No.751693 (1 seq.)
	>SRA1047945	SRR035094.72674	454 Sequencing (SRP001815)		286	360	+	Cys	GCA	[SRA]
Identical group No.751697 (2 seq.)
	>SRA1048005	SRR035094.86814	454 Sequencing (SRP001815)		82	153	+	Cys	GCA	[SRA]
	>SRA1048267	SRR035094.136926	454 Sequencing (SRP001815)		82	153	+	Cys	GCA	[SRA]
Identical group No.751700 (1 seq.)
	>SRA1048039	SRR035094.96640	454 Sequencing (SRP001815)		202	276	+	Cys	GCA	[SRA]
Identical group No.751701 (1 seq.)
	>SRA1048045	SRR035094.97434	454 Sequencing (SRP001815)		117	191	+	Cys	GCA	[SRA]
Identical group No.751715 (1 seq.)
	>SRA1048550	SRR035094.197400	454 Sequencing (SRP001815)		43	117	+	Cys	GCA	[SRA]
Identical group No.751725 (1 seq.)
	>SRA1048768	SRR035094.243624	454 Sequencing (SRP001815)		361	435	+	Cys	GCA	[SRA]
Identical group No.779867 (3 seq.)
	>WENV170604997	FUWD010440757	[FUWD] metagenome; unknown		705	778	+	Cys	GCA	[ENA]	◯
	>SRA1034374	SRR035089.71970	454 Sequencing (SRP001810)		169	96	-	Cys	GCA	[SRA]
	>SRA1048962	SRR035094.297936	454 Sequencing (SRP001815)		215	142	-	Cys	GCA	[SRA]
Identical group No.782279 (11 seq.)
	>W131221895	AUAV01000017	Gammaproteobacteria	Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]	97570	97643	+	Cys	GCA	[ENA]	○
	>WENV181309934	OFIY01012754	[OFIY] marine metagenome; sea ice		56	129	+	Cys	GCA	[ENA]	◯
	>WENV181322270	OFKP01046645	[OFKP] marine metagenome; sea ice		270	343	+	Cys	GCA	[ENA]	◯
	>WENV181323768	OFKZ01004335	[OFKZ] marine metagenome; sea ice		452	379	-	Cys	GCA	[ENA]	◯
	>W141223966	BAEQ01000043	Gammaproteobacteria	Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]	36599	36526	-	Cys	GCA	[ENA]	○
	>WENV183621186	OOFT01015020	[OOFT] marine metagenome; sea ice		445	518	+	Cys	GCA	[ENA]	◯
	>WENV183625651	OOGG01005463	[OOGG] marine metagenome; sea ice		333	260	-	Cys	GCA	[ENA]	◯
	>WENV183628274	OOGN01002757	[OOGN] marine metagenome; sea ice		922	995	+	Cys	GCA	[ENA]	◯
	>WENV183631294	OOGU01070698	[OOGU] marine metagenome; sea ice		591	664	+	Cys	GCA	[ENA]	◯
	>W1810155432	PJAR01000044	Gammaproteobacteria	Glaciecola sp. 33A [PJAR]	691397	691324	-	Cys	GCA	[ENA]	○
	>SRA1048316	SRR035094.146069	454 Sequencing (SRP001815)		149	76	-	Cys	GCA	[SRA]
Identical group No.788234 (3 seq.)
	>WENV170612137	FUWD012510880	[FUWD] metagenome; unknown		58	131	+	Cys	GCA	[ENA]	◯
	>SRA1032311	SRR035087.600433	454 Sequencing (SRP001808)		298	371	+	Cys	GCA	[SRA]
	>SRA1048742	SRR035094.239193	454 Sequencing (SRP001815)		519	446	-	Cys	GCA	[SRA]
Identical group No.805098 (2 seq.)
	>WENV170607827	FUWD010859377	[FUWD] metagenome; unknown		409	480	+	Cys	GCA	[ENA]	◯
	>SRA1048691	SRR035094.229021	454 Sequencing (SRP001815)		120	191	+	Cys	GCA	[SRA]
Identical group No.805113 (3 seq.)
	>WENV170608119	FUWD010894975	[FUWD] metagenome; unknown		299	226	-	Cys	GCA	[ENA]	◯
	>SRA1040568	SRR035091.116019	454 Sequencing (SRP001812)		274	347	+	Cys	GCA	[SRA]
	>SRA1048257	SRR035094.135589	454 Sequencing (SRP001815)		474	401	-	Cys	GCA	[SRA]
Identical group No.805291 (3 seq.)
	>WENV170612711	FUWD012666268	[FUWD] metagenome; unknown		61	131	+	Cys	GCA	[ENA]	◯
	>SRA1047641	SRR035094.4308	454 Sequencing (SRP001815)		71	141	+	Cys	GCA	[SRA]
	>SRA1047666	SRR035094.16779	454 Sequencing (SRP001815)		72	142	+	Cys	GCA	[SRA]
Identical group No.805317 (2 seq.)
	>WENV170613105	FUWD012780655	[FUWD] metagenome; unknown		494	567	+	Cys	GCA	[ENA]	◯
	>SRA1048589	SRR035094.204355	454 Sequencing (SRP001815)		253	326	+	Cys	GCA	[SRA]
Identical group No.805514 (11 seq.)
	>WENV182579635	OJGS01035548	[OJGS] seawater metagenome; Sea water		587	516	-	Cys	GCA	[ENA]	◯
	>WENV170625303	FUWD013195648	[FUWD] metagenome; unknown		1137	1064	-	Cys	GCA	[ENA]	◯
	>WENV170633543	FUWD013398410	[FUWD] metagenome; unknown		1137	1064	-	Cys	GCA	[ENA]	◯
	>SRA1027609	SRR035086.159576	454 Sequencing (SRP001807)		343	416	+	Cys	GCA	[SRA]
	>SRA1028263	SRR035086.288242	454 Sequencing (SRP001807)		167	94	-	Cys	GCA	[SRA]
	>SRA1028362	SRR035086.308827	454 Sequencing (SRP001807)		357	284	-	Cys	GCA	[SRA]
	>SRA1028419	SRR035086.321991	454 Sequencing (SRP001807)		111	184	+	Cys	GCA	[SRA]
	>SRA1048465	SRR035094.180105	454 Sequencing (SRP001815)		389	316	-	Cys	GCA	[SRA]
	>SRA1050740	SRR035096.9803	454 Sequencing (SRP001817)		140	213	+	Cys	GCA	[SRA]
	>SRA1051016	SRR035096.69864	454 Sequencing (SRP001817)		89	162	+	Cys	GCA	[SRA]
	>SRA1051091	SRR035096.83859	454 Sequencing (SRP001817)		255	328	+	Cys	GCA	[SRA]
Identical group No.809542 (2 seq.)
	>SRA1044641	SRR035092.315469	454 Sequencing (SRP001813)		92	165	+	Cys	GCA	[SRA]
	>SRA1048340	SRR035094.150781	454 Sequencing (SRP001815)		413	486	+	Cys	GCA	[SRA]
Identical group No.824090 (1 seq.)
	>SRA1048250	SRR035094.134614	454 Sequencing (SRP001815)		258	329	+	Cys	GCA	[SRA]
Identical group No.824099 (1 seq.)
	>SRA1048551	SRR035094.197669	454 Sequencing (SRP001815)		332	259	-	Cys	GCA	[SRA]
Identical group No.824106 (1 seq.)
	>SRA1048766	SRR035094.243375	454 Sequencing (SRP001815)		254	325	+	Cys	GCA	[SRA]
Identical group No.824111 (1 seq.)
	>SRA1048942	SRR035094.292914	454 Sequencing (SRP001815)		246	319	+	Cys	GCA	[SRA]
Identical group No.824113 (1 seq.)
	>SRA1048949	SRR035094.295595	454 Sequencing (SRP001815)		192	119	-	Cys	GCA	[SRA]
Select	Sequence ID	Genome ID (or Accession No.)	Phylum/Class (Sample source for ENV)	Species	Start	End	Direction	AA	Anticodon	Genome/Seq. Info.	Decision

Download Sequence	Representative sequence of each cluster
View ClustalW result

BACK