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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = GCG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.358874 (19 seq.)
>WENV170624311
FUWD013179602
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>WENV170632598
FUWD013384921
[FUWD] metagenome; unknown
3430
3506
+
Arg
GCG
[ENA]
¢þ
>SRA1018549
SRR035082.308810
454 Sequencing (SRP001803)
361
437
+
Arg
GCG
[SRA]
>SRA1018615
SRR035082.322433
454 Sequencing (SRP001803)
293
217
-
Arg
GCG
[SRA]
>SRA1033830
SRR035088.368272
454 Sequencing (SRP001809)
288
212
-
Arg
GCG
[SRA]
>SRA1039979
SRR035091.8881
454 Sequencing (SRP001812)
20
96
+
Arg
GCG
[SRA]
>SRA1040335
SRR035091.80670
454 Sequencing (SRP001812)
410
334
-
Arg
GCG
[SRA]
>SRA1040364
SRR035091.85167
454 Sequencing (SRP001812)
239
315
+
Arg
GCG
[SRA]
>SRA1040753
SRR035091.143597
454 Sequencing (SRP001812)
206
130
-
Arg
GCG
[SRA]
>SRA1040866
SRR035091.160897
454 Sequencing (SRP001812)
144
68
-
Arg
GCG
[SRA]
>SRA1041203
SRR035091.213004
454 Sequencing (SRP001812)
157
81
-
Arg
GCG
[SRA]
>SRA1041844
SRR035091.303898
454 Sequencing (SRP001812)
80
4
-
Arg
GCG
[SRA]
>SRA1041896
SRR035091.312805
454 Sequencing (SRP001812)
47
123
+
Arg
GCG
[SRA]
>SRA1042949
SRR035091.472250
454 Sequencing (SRP001812)
100
176
+
Arg
GCG
[SRA]
>SRA1042989
SRR035092.15941
454 Sequencing (SRP001813)
363
287
-
Arg
GCG
[SRA]
>SRA1043930
SRR035092.196474
454 Sequencing (SRP001813)
209
285
+
Arg
GCG
[SRA]
>SRA1044761
SRR035092.335993
454 Sequencing (SRP001813)
344
420
+
Arg
GCG
[SRA]
>SRA1048063
SRR035094.101345
454 Sequencing (SRP001815)
183
107
-
Arg
GCG
[SRA]
>SRA1048648
SRR035094.216176
454 Sequencing (SRP001815)
89
13
-
Arg
GCG
[SRA]
Identical group No.415344 (2 seq.)
>SRA1033026
SRR035088.154199
454 Sequencing (SRP001809)
43
119
+
Arg
GCG
[SRA]
>SRA1047840
SRR035094.51705
454 Sequencing (SRP001815)
298
374
+
Arg
GCG
[SRA]
Identical group No.415513 (1 seq.)
>SRA1047693
SRR035094.22759
454 Sequencing (SRP001815)
52
128
+
Arg
GCG
[SRA]
Identical group No.415519 (2 seq.)
>SRA1047753
SRR035094.35380
454 Sequencing (SRP001815)
218
291
+
Arg
GCG
[SRA]
>SRA1048526
SRR035094.193625
454 Sequencing (SRP001815)
218
291
+
Arg
GCG
[SRA]
Identical group No.415545 (1 seq.)
>SRA1048120
SRR035094.112961
454 Sequencing (SRP001815)
307
383
+
Arg
GCG
[SRA]
Identical group No.415579 (1 seq.)
>SRA1048683
SRR035094.227263
454 Sequencing (SRP001815)
146
70
-
Arg
GCG
[SRA]
Identical group No.415587 (1 seq.)
>SRA1048799
SRR035094.251003
454 Sequencing (SRP001815)
190
263
+
Arg
GCG
[SRA]
Identical group No.612528 (1 seq.)
>SRA1047935
SRR035094.70097
454 Sequencing (SRP001815)
306
381
+
Arg
GCG
[SRA]
Identical group No.612556 (1 seq.)
>SRA1048338
SRR035094.150046
454 Sequencing (SRP001815)
488
415
-
Arg
GCG
[SRA]
Identical group No.711106 (5 seq.)
>WENV170612645
FUWD012650165
[FUWD] metagenome; unknown
163
235
+
Arg
GCG
[ENA]
¢þ
>SRA1018226
SRR035082.258337
454 Sequencing (SRP001803)
137
209
+
Arg
GCG
[SRA]
>SRA1041596
SRR035091.267892
454 Sequencing (SRP001812)
305
379
+
Arg
GCG
[SRA]
>SRA1044131
SRR035092.228757
454 Sequencing (SRP001813)
169
241
+
Arg
GCG
[SRA]
>SRA1047906
SRR035094.65164
454 Sequencing (SRP001815)
27
101
+
Arg
GCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK