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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = GGA
HIT:
22 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7683 (1 seq.)
>SRA1048140
SRR035094.115064
454 Sequencing (SRP001815)
218
124
-
Ser
GGA
[SRA]
Identical group No.8246 (5 seq.)
>SRA1025784
SRR035085.82861
454 Sequencing (SRP001806)
500
407
-
Ser
GGA
[SRA]
>SRA1025924
SRR035085.111062
454 Sequencing (SRP001806)
500
407
-
Ser
GGA
[SRA]
>SRA1026756
SRR035085.280550
454 Sequencing (SRP001806)
153
246
+
Ser
GGA
[SRA]
>SRA1032294
SRR035087.596928
454 Sequencing (SRP001808)
288
195
-
Ser
GGA
[SRA]
>SRA1048138
SRR035094.114951
454 Sequencing (SRP001815)
419
326
-
Ser
GGA
[SRA]
Identical group No.8249 (10 seq.)
>WENV170616561
FUWD012891147
[FUWD] metagenome; unknown
3385
3292
-
Ser
GGA
[ENA]
¢þ
>SRA1025941
SRR035085.113912
454 Sequencing (SRP001806)
28
121
+
Ser
GGA
[SRA]
>SRA1026399
SRR035085.201684
454 Sequencing (SRP001806)
293
200
-
Ser
GGA
[SRA]
>SRA1026450
SRR035085.208930
454 Sequencing (SRP001806)
379
472
+
Ser
GGA
[SRA]
>SRA1029043
SRR035087.64489
454 Sequencing (SRP001808)
300
207
-
Ser
GGA
[SRA]
>SRA1030539
SRR035087.292265
454 Sequencing (SRP001808)
355
262
-
Ser
GGA
[SRA]
>SRA1030849
SRR035087.338799
454 Sequencing (SRP001808)
68
161
+
Ser
GGA
[SRA]
>SRA1035835
SRR035089.384851
454 Sequencing (SRP001810)
122
29
-
Ser
GGA
[SRA]
>SRA1048013
SRR035094.88403
454 Sequencing (SRP001815)
62
155
+
Ser
GGA
[SRA]
>SRA1049989
SRR035095.172233
454 Sequencing (SRP001816)
224
317
+
Ser
GGA
[SRA]
Identical group No.10004 (3 seq.)
>WENV170624458
FUWD013181995
[FUWD] metagenome; unknown
3867
3774
-
Ser
GGA
[ENA]
¢þ
>WENV170632743
FUWD013386851
[FUWD] metagenome; unknown
3867
3774
-
Ser
GGA
[ENA]
¢þ
>SRA1048518
SRR035094.192397
454 Sequencing (SRP001815)
21
114
+
Ser
GGA
[SRA]
Identical group No.10005 (7 seq.)
>WENV170624556
FUWD013183389
[FUWD] metagenome; unknown
5489
5396
-
Ser
GGA
[ENA]
¢þ
>WENV170632845
FUWD013387975
[FUWD] metagenome; unknown
5489
5396
-
Ser
GGA
[ENA]
¢þ
>SRA1018875
SRR035082.361910
454 Sequencing (SRP001803)
377
284
-
Ser
GGA
[SRA]
>SRA1032979
SRR035088.142468
454 Sequencing (SRP001809)
173
266
+
Ser
GGA
[SRA]
>SRA1033887
SRR035088.395251
454 Sequencing (SRP001809)
59
152
+
Ser
GGA
[SRA]
>SRA1048258
SRR035094.135602
454 Sequencing (SRP001815)
30
123
+
Ser
GGA
[SRA]
>SRA1048501
SRR035094.187787
454 Sequencing (SRP001815)
229
136
-
Ser
GGA
[SRA]
Identical group No.19934 (5 seq.)
>WENV170625514
FUWD013199648
[FUWD] metagenome; unknown
1443
1352
-
Ser
GGA
[ENA]
¢þ
>WENV170633743
FUWD013402004
[FUWD] metagenome; unknown
1443
1352
-
Ser
GGA
[ENA]
¢þ
>SRA1033354
SRR035088.233740
454 Sequencing (SRP001809)
288
197
-
Ser
GGA
[SRA]
>SRA1036543
SRR035089.545408
454 Sequencing (SRP001810)
197
288
+
Ser
GGA
[SRA]
>SRA1048022
SRR035094.91994
454 Sequencing (SRP001815)
183
92
-
Ser
GGA
[SRA]
Identical group No.28081 (1 seq.)
>SRA1049033
SRR035094.320246
454 Sequencing (SRP001815)
122
212
+
Ser
GGA
[SRA]
Identical group No.32936 (7 seq.)
>WENV170607966
FUWD010875186
[FUWD] metagenome; unknown
106
16
-
Ser
GGA
[ENA]
¢þ
>WENV170607991
FUWD010879643
[FUWD] metagenome; unknown
190
100
-
Ser
GGA
[ENA]
¢þ
>SRA1031966
SRR035087.521950
454 Sequencing (SRP001808)
208
118
-
Ser
GGA
[SRA]
>SRA1032348
SRR035087.610085
454 Sequencing (SRP001808)
357
267
-
Ser
GGA
[SRA]
>SRA1033201
SRR035088.196248
454 Sequencing (SRP001809)
190
100
-
Ser
GGA
[SRA]
>SRA1033318
SRR035088.223238
454 Sequencing (SRP001809)
190
100
-
Ser
GGA
[SRA]
>SRA1048367
SRR035094.158545
454 Sequencing (SRP001815)
267
357
+
Ser
GGA
[SRA]
Identical group No.37792 (2 seq.)
>WENV170612030
FUWD012486022
[FUWD] metagenome; unknown
80
170
+
Ser
GGA
[ENA]
¢þ
>SRA1047700
SRR035094.24450
454 Sequencing (SRP001815)
226
136
-
Ser
GGA
[SRA]
Identical group No.42658 (1 seq.)
>SRA1048560
SRR035094.198481
454 Sequencing (SRP001815)
191
281
+
Ser
GGA
[SRA]
Identical group No.42659 (1 seq.)
>SRA1048757
SRR035094.241999
454 Sequencing (SRP001815)
229
318
+
Ser
GGA
[SRA]
Identical group No.45885 (5 seq.)
>WENV170603277
FUWD010298262
[FUWD] metagenome; unknown
358
269
-
Ser
GGA
[ENA]
¢þ
>WENV170608222
FUWD010903480
[FUWD] metagenome; unknown
365
454
+
Ser
GGA
[ENA]
¢þ
>SRA1018302
SRR035082.270134
454 Sequencing (SRP001803)
154
243
+
Ser
GGA
[SRA]
>SRA1036087
SRR035089.443181
454 Sequencing (SRP001810)
132
221
+
Ser
GGA
[SRA]
>SRA1048975
SRR035094.300391
454 Sequencing (SRP001815)
136
225
+
Ser
GGA
[SRA]
Identical group No.52744 (5 seq.)
>WENV170601384
FUWD010170490
[FUWD] metagenome; unknown
135
46
-
Ser
GGA
[ENA]
¢þ
>WENV170626603
FUWD013226594
[FUWD] metagenome; unknown
570
482
-
Ser
GGA
[ENA]
¢þ
>SRA1032464
SRR035088.17863
454 Sequencing (SRP001809)
165
77
-
Ser
GGA
[SRA]
>SRA1047922
SRR035094.68507
454 Sequencing (SRP001815)
179
267
+
Ser
GGA
[SRA]
>SRA1053951
SRR035099.14992
454 Sequencing (SRP001820)
119
30
-
Ser
GGA
[SRA]
Identical group No.57974 (3 seq.)
>WENV170611610
FUWD012357436
[FUWD] metagenome; unknown
231
320
+
Ser
GGA
[ENA]
¢þ
>SRA1018429
SRR035082.290262
454 Sequencing (SRP001803)
241
330
+
Ser
GGA
[SRA]
>SRA1048498
SRR035094.187500
454 Sequencing (SRP001815)
162
73
-
Ser
GGA
[SRA]
Identical group No.66813 (1 seq.)
>SRA1048721
SRR035094.234571
454 Sequencing (SRP001815)
331
244
-
Ser
GGA
[SRA]
Identical group No.98453 (3 seq.)
>WENV170603394
FUWD010307435
[FUWD] metagenome; unknown
113
198
+
Ser
GGA
[ENA]
¢þ
>SRA1044183
SRR035092.237678
454 Sequencing (SRP001813)
113
198
+
Ser
GGA
[SRA]
>SRA1047687
SRR035094.21043
454 Sequencing (SRP001815)
19
104
+
Ser
GGA
[SRA]
Identical group No.98554 (2 seq.)
>WENV170612744
FUWD012676738
[FUWD] metagenome; unknown
298
213
-
Ser
GGA
[ENA]
¢þ
>SRA1048366
SRR035094.158204
454 Sequencing (SRP001815)
389
304
-
Ser
GGA
[SRA]
Identical group No.107012 (1 seq.)
>SRA1048169
SRR035094.121694
454 Sequencing (SRP001815)
385
298
-
Ser
GGA
[SRA]
Identical group No.107021 (1 seq.)
>SRA1048984
SRR035094.303760
454 Sequencing (SRP001815)
109
194
+
Ser
GGA
[SRA]
Identical group No.131781 (5 seq.)
>WENV170621242
FUWD013053543
[FUWD] metagenome; unknown
1601
1687
+
Ser
GGA
[ENA]
¢þ
>WENV170629422
FUWD013270042
[FUWD] metagenome; unknown
1601
1687
+
Ser
GGA
[ENA]
¢þ
>SRA1044389
SRR035092.272490
454 Sequencing (SRP001813)
238
324
+
Ser
GGA
[SRA]
>SRA1047661
SRR035094.14553
454 Sequencing (SRP001815)
167
81
-
Ser
GGA
[SRA]
>SRA1048306
SRR035094.144593
454 Sequencing (SRP001815)
155
69
-
Ser
GGA
[SRA]
Identical group No.165730 (8 seq.)
>WENV170611702
FUWD012377980
[FUWD] metagenome; unknown
327
242
-
Ser
GGA
[ENA]
¢þ
>WENV170620844
FUWD013041032
[FUWD] metagenome; unknown
847
764
-
Ser
GGA
[ENA]
¢þ
>WENV170628999
FUWD013258122
[FUWD] metagenome; unknown
847
764
-
Ser
GGA
[ENA]
¢þ
>SRA1033375
SRR035088.238270
454 Sequencing (SRP001809)
289
206
-
Ser
GGA
[SRA]
>SRA1038630
SRR035090.339386
454 Sequencing (SRP001811)
193
278
+
Ser
GGA
[SRA]
>SRA1041330
SRR035091.228416
454 Sequencing (SRP001812)
295
378
+
Ser
GGA
[SRA]
>SRA1042498
SRR035091.397804
454 Sequencing (SRP001812)
376
293
-
Ser
GGA
[SRA]
>SRA1048115
SRR035094.112207
454 Sequencing (SRP001815)
360
277
-
Ser
GGA
[SRA]
Identical group No.165812 (3 seq.)
>WENV170623468
FUWD013152386
[FUWD] metagenome; unknown
1037
954
-
Ser
GGA
[ENA]
¢þ
>WENV170631733
FUWD013363303
[FUWD] metagenome; unknown
1037
954
-
Ser
GGA
[ENA]
¢þ
>SRA1048695
SRR035094.229300
454 Sequencing (SRP001815)
424
341
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK