This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = GTG
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264007 (1 seq.)
>SRA1048441
SRR035094.174623
454 Sequencing (SRP001815)
184
109
-
His
GTG
[SRA]
Identical group No.272403 (9 seq.)
>WENV170605145
FUWD010454268
[FUWD] metagenome; unknown
118
192
+
His
GTG
[ENA]
¢þ
>WENV170626300
FUWD013218587
[FUWD] metagenome; unknown
802
876
+
His
GTG
[ENA]
¢þ
>SRA1026411
SRR035085.202914
454 Sequencing (SRP001806)
119
45
-
His
GTG
[SRA]
>SRA1031571
SRR035087.451590
454 Sequencing (SRP001808)
245
171
-
His
GTG
[SRA]
>SRA1033696
SRR035088.327954
454 Sequencing (SRP001809)
112
186
+
His
GTG
[SRA]
>SRA1036485
SRR035089.531912
454 Sequencing (SRP001810)
139
65
-
His
GTG
[SRA]
>SRA1047893
SRR035094.62961
454 Sequencing (SRP001815)
322
248
-
His
GTG
[SRA]
>SRA1048796
SRR035094.250534
454 Sequencing (SRP001815)
145
219
+
His
GTG
[SRA]
>SRA1054568
SRR035099.165828
454 Sequencing (SRP001820)
352
278
-
His
GTG
[SRA]
Identical group No.272670 (10 seq.)
>WENV170624531
FUWD013182761
[FUWD] metagenome; unknown
1782
1706
-
His
GTG
[ENA]
¢þ
>WENV170632818
FUWD013387462
[FUWD] metagenome; unknown
1782
1706
-
His
GTG
[ENA]
¢þ
>SRA1030053
SRR035087.221600
454 Sequencing (SRP001808)
291
215
-
His
GTG
[SRA]
>SRA1031423
SRR035087.427513
454 Sequencing (SRP001808)
150
226
+
His
GTG
[SRA]
>SRA1032208
SRR035087.575656
454 Sequencing (SRP001808)
340
264
-
His
GTG
[SRA]
>SRA1035049
SRR035089.226932
454 Sequencing (SRP001810)
440
364
-
His
GTG
[SRA]
>SRA1035335
SRR035089.285654
454 Sequencing (SRP001810)
94
18
-
His
GTG
[SRA]
>SRA1035609
SRR035089.339383
454 Sequencing (SRP001810)
274
350
+
His
GTG
[SRA]
>SRA1035854
SRR035089.388937
454 Sequencing (SRP001810)
236
312
+
His
GTG
[SRA]
>SRA1048163
SRR035094.120353
454 Sequencing (SRP001815)
282
206
-
His
GTG
[SRA]
Identical group No.272672 (4 seq.)
>WENV170612339
FUWD012579873
[FUWD] metagenome; unknown
289
213
-
His
GTG
[ENA]
¢þ
>SRA1035065
SRR035089.230186
454 Sequencing (SRP001810)
41
117
+
His
GTG
[SRA]
>SRA1036427
SRR035089.519876
454 Sequencing (SRP001810)
286
210
-
His
GTG
[SRA]
>SRA1048530
SRR035094.194327
454 Sequencing (SRP001815)
244
168
-
His
GTG
[SRA]
Identical group No.272854 (9 seq.)
>WENV170623991
FUWD013173811
[FUWD] metagenome; unknown
5732
5808
+
His
GTG
[ENA]
¢þ
>WENV170632280
FUWD013380305
[FUWD] metagenome; unknown
5732
5808
+
His
GTG
[ENA]
¢þ
>SRA1033765
SRR035088.348001
454 Sequencing (SRP001809)
115
39
-
His
GTG
[SRA]
>SRA1036230
SRR035089.475583
454 Sequencing (SRP001810)
103
27
-
His
GTG
[SRA]
>SRA1047828
SRR035094.49506
454 Sequencing (SRP001815)
131
207
+
His
GTG
[SRA]
>SRA1049006
SRR035094.311325
454 Sequencing (SRP001815)
145
69
-
His
GTG
[SRA]
>SRA1049393
SRR035095.69912
454 Sequencing (SRP001816)
346
422
+
His
GTG
[SRA]
>SRA1049475
SRR035095.82838
454 Sequencing (SRP001816)
165
89
-
His
GTG
[SRA]
>SRA1050221
SRR035095.214480
454 Sequencing (SRP001816)
111
35
-
His
GTG
[SRA]
Identical group No.300642 (3 seq.)
>WENV170607998
FUWD010880723
[FUWD] metagenome; unknown
292
368
+
His
GTG
[ENA]
¢þ
>SRA1031219
SRR035087.393597
454 Sequencing (SRP001808)
122
200
+
His
GTG
[SRA]
>SRA1048861
SRR035094.265914
454 Sequencing (SRP001815)
95
19
-
His
GTG
[SRA]
Identical group No.358010 (2 seq.)
>WENV170608232
FUWD010905322
[FUWD] metagenome; unknown
29
105
+
His
GTG
[ENA]
¢þ
>SRA1048836
SRR035094.260145
454 Sequencing (SRP001815)
411
335
-
His
GTG
[SRA]
Identical group No.358376 (2 seq.)
>WENV170612638
FUWD012649027
[FUWD] metagenome; unknown
278
354
+
His
GTG
[ENA]
¢þ
>SRA1048577
SRR035094.202299
454 Sequencing (SRP001815)
402
478
+
His
GTG
[SRA]
Identical group No.415520 (1 seq.)
>SRA1047770
SRR035094.38370
454 Sequencing (SRP001815)
414
488
+
His
GTG
[SRA]
Identical group No.415563 (1 seq.)
>SRA1048484
SRR035094.184512
454 Sequencing (SRP001815)
144
218
+
His
GTG
[SRA]
Identical group No.415576 (1 seq.)
>SRA1048657
SRR035094.218382
454 Sequencing (SRP001815)
231
157
-
His
GTG
[SRA]
Identical group No.415597 (1 seq.)
>SRA1048951
SRR035094.295739
454 Sequencing (SRP001815)
413
338
-
His
GTG
[SRA]
Identical group No.453203 (8 seq.)
>WENV170603402
FUWD010307766
[FUWD] metagenome; unknown
28
102
+
His
GTG
[ENA]
¢þ
>WENV170621792
FUWD013073442
[FUWD] metagenome; unknown
604
678
+
His
GTG
[ENA]
¢þ
>WENV170629981
FUWD013289096
[FUWD] metagenome; unknown
604
678
+
His
GTG
[ENA]
¢þ
>SRA1025455
SRR035085.10284
454 Sequencing (SRP001806)
38
112
+
His
GTG
[SRA]
>SRA1041215
SRR035091.214387
454 Sequencing (SRP001812)
243
169
-
His
GTG
[SRA]
>SRA1043451
SRR035092.118403
454 Sequencing (SRP001813)
234
160
-
His
GTG
[SRA]
>SRA1048392
SRR035094.162668
454 Sequencing (SRP001815)
289
363
+
His
GTG
[SRA]
>SRA1049372
SRR035095.65924
454 Sequencing (SRP001816)
409
335
-
His
GTG
[SRA]
Identical group No.547686 (6 seq.)
>WENV170603269
FUWD010297728
[FUWD] metagenome; unknown
59
133
+
His
GTG
[ENA]
¢þ
>WENV170622866
FUWD013124415
[FUWD] metagenome; unknown
1500
1426
-
His
GTG
[ENA]
¢þ
>WENV170631085
FUWD013337948
[FUWD] metagenome; unknown
1500
1426
-
His
GTG
[ENA]
¢þ
>SRA1017160
SRR035082.90554
454 Sequencing (SRP001803)
59
133
+
His
GTG
[SRA]
>SRA1041742
SRR035091.285786
454 Sequencing (SRP001812)
301
227
-
His
GTG
[SRA]
>SRA1048198
SRR035094.127666
454 Sequencing (SRP001815)
239
164
-
His
GTG
[SRA]
Identical group No.547812 (2 seq.)
>WENV170605209
FUWD010458420
[FUWD] metagenome; unknown
238
163
-
His
GTG
[ENA]
¢þ
>SRA1048188
SRR035094.125130
454 Sequencing (SRP001815)
24
99
+
His
GTG
[SRA]
Identical group No.547960 (3 seq.)
>WENV170607660
FUWD010845721
[FUWD] metagenome; unknown
85
10
-
His
GTG
[ENA]
¢þ
>SRA1017258
SRR035082.106644
454 Sequencing (SRP001803)
123
48
-
His
GTG
[SRA]
>SRA1048580
SRR035094.203085
454 Sequencing (SRP001815)
95
20
-
His
GTG
[SRA]
Identical group No.612527 (1 seq.)
>SRA1047897
SRR035094.63864
454 Sequencing (SRP001815)
247
172
-
His
GTG
[SRA]
Identical group No.612553 (1 seq.)
>SRA1048286
SRR035094.139469
454 Sequencing (SRP001815)
11
86
+
His
GTG
[SRA]
Identical group No.612570 (1 seq.)
>SRA1048569
SRR035094.201385
454 Sequencing (SRP001815)
145
218
+
His
GTG
[SRA]
Identical group No.654454 (23 seq.)
>W131157553
AQSK01000187
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
7532
7606
+
His
GTG
[ENA]
¡û
>W131157622
AQSM01000134
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
7571
7645
+
His
GTG
[ENA]
¡û
>W131157674
AQSO01000150
Unclassified
Cloacimonetes bacterium SCGC AAA252-D03 KSB1 bacterium SCGC AAA252-D03 [AQSO]
19033
19107
+
His
GTG
[ENA]
¡û
>W131192109
ASKM01000010
Unclassified
Cloacimonetes bacterium SCGC AAA252-N05 KSB1 bacterium SCGC AAA252-N05 [ASKM]
8195
8121
-
His
GTG
[ENA]
¡û
>W131192115
ASKN01000007
Unclassified
Cloacimonetes bacterium SCGC AAA252-F02 KSB1 bacterium SCGC AAA252-F02 [ASKN]
19757
19831
+
His
GTG
[ENA]
¡û
>W131192143
ASKO01000040
Unclassified
Cloacimonetes bacterium SCGC AAA252-M08 KSB1 bacterium SCGC AAA252-M08 [ASKO]
7657
7731
+
His
GTG
[ENA]
¡û
>W131192955
ASNH01000081
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
2547
2621
+
His
GTG
[ENA]
¡û
>W131192991
ASNI01000033
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
22884
22810
-
His
GTG
[ENA]
¡û
>W131193049
ASNL01000036
Unclassified
Cloacimonetes bacterium SCGC AAA252-P14 KSB1 bacterium SCGC AAA252-P14 [ASNL]
2426
2500
+
His
GTG
[ENA]
¡û
>W131193097
ASNN01000082
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
2547
2621
+
His
GTG
[ENA]
¡û
>W131193130
ASNP01000007
Unclassified
Cloacimonetes bacterium SCGC AAA252-G07 KSB1 bacterium SCGC AAA252-G07 [ASNP]
16460
16534
+
His
GTG
[ENA]
¡û
>W131193160
ASNR01000021
Unclassified
Cloacimonetes bacterium SCGC AAA252-L13 KSB1 bacterium SCGC AAA252-L13 [ASNR]
6997
6923
-
His
GTG
[ENA]
¡û
>W131193168
ASNS01000011
Unclassified
Cloacimonetes bacterium SCGC AAA252-P02 KSB1 bacterium SCGC AAA252-P02 [ASNS]
16946
16872
-
His
GTG
[ENA]
¡û
>W141139701
AWNX01000080
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
7437
7511
+
His
GTG
[ENA]
¡û
>W141139724
AWNY01000030
Unclassified
Cloacimonetes bacterium JGI OTU-2 [AWNY]
19033
19107
+
His
GTG
[ENA]
¡û
>WENV170599415
FUWD010074019
[FUWD] metagenome; unknown
230
304
+
His
GTG
[ENA]
¢þ
>WENV170625403
FUWD013197292
[FUWD] metagenome; unknown
121
47
-
His
GTG
[ENA]
¢þ
>WENV170633643
FUWD013399870
[FUWD] metagenome; unknown
121
47
-
His
GTG
[ENA]
¢þ
>SRA1028857
SRR035087.24243
454 Sequencing (SRP001808)
402
476
+
His
GTG
[SRA]
>SRA1034556
SRR035089.120808
454 Sequencing (SRP001810)
167
241
+
His
GTG
[SRA]
>SRA1034578
SRR035089.127453
454 Sequencing (SRP001810)
121
47
-
His
GTG
[SRA]
>SRA1048069
SRR035094.102356
454 Sequencing (SRP001815)
89
15
-
His
GTG
[SRA]
>SRA1049201
SRR035095.37156
454 Sequencing (SRP001816)
312
238
-
His
GTG
[SRA]
Identical group No.672254 (4 seq.)
>WENV170611995
FUWD012478459
[FUWD] metagenome; unknown
87
161
+
His
GTG
[ENA]
¢þ
>SRA1028907
SRR035087.35830
454 Sequencing (SRP001808)
87
161
+
His
GTG
[SRA]
>SRA1029716
SRR035087.169505
454 Sequencing (SRP001808)
87
161
+
His
GTG
[SRA]
>SRA1048387
SRR035094.162251
454 Sequencing (SRP001815)
134
60
-
His
GTG
[SRA]
Identical group No.711568 (13 seq.)
>WENV170627258
FUWD013232427
[FUWD] metagenome; unknown
2766
2693
-
His
GTG
[ENA]
¢þ
>SRA1040742
SRR035091.141413
454 Sequencing (SRP001812)
114
41
-
His
GTG
[SRA]
>SRA1041130
SRR035091.201342
454 Sequencing (SRP001812)
254
181
-
His
GTG
[SRA]
>SRA1041384
SRR035091.235059
454 Sequencing (SRP001812)
254
181
-
His
GTG
[SRA]
>SRA1041412
SRR035091.238582
454 Sequencing (SRP001812)
376
449
+
His
GTG
[SRA]
>SRA1042104
SRR035091.338878
454 Sequencing (SRP001812)
103
30
-
His
GTG
[SRA]
>SRA1042419
SRR035091.384868
454 Sequencing (SRP001812)
89
162
+
His
GTG
[SRA]
>SRA1043647
SRR035092.154996
454 Sequencing (SRP001813)
205
278
+
His
GTG
[SRA]
>SRA1047913
SRR035094.66417
454 Sequencing (SRP001815)
188
261
+
His
GTG
[SRA]
>SRA1048605
SRR035094.208545
454 Sequencing (SRP001815)
234
161
-
His
GTG
[SRA]
>SRA1049068
SRR035095.14065
454 Sequencing (SRP001816)
128
201
+
His
GTG
[SRA]
>SRA1049778
SRR035095.137511
454 Sequencing (SRP001816)
331
404
+
His
GTG
[SRA]
>SRA1049802
SRR035095.140363
454 Sequencing (SRP001816)
306
379
+
His
GTG
[SRA]
Identical group No.720271 (2 seq.)
>SRA1043910
SRR035092.192774
454 Sequencing (SRP001813)
100
26
-
His
GTG
[SRA]
>SRA1048598
SRR035094.206395
454 Sequencing (SRP001815)
91
17
-
His
GTG
[SRA]
Identical group No.751684 (2 seq.)
>SRA1047846
SRR035094.52561
454 Sequencing (SRP001815)
191
262
+
His
GTG
[SRA]
>SRA1048056
SRR035094.99321
454 Sequencing (SRP001815)
191
262
+
His
GTG
[SRA]
Identical group No.751742 (1 seq.)
>SRA1048867
SRR035094.266865
454 Sequencing (SRP001815)
373
446
+
His
GTG
[SRA]
Identical group No.788076 (8 seq.)
>WENV170611592
FUWD012355058
[FUWD] metagenome; unknown
133
61
-
His
GTG
[ENA]
¢þ
>WENV170612773
FUWD012685172
[FUWD] metagenome; unknown
171
243
+
His
GTG
[ENA]
¢þ
>SRA1017708
SRR035082.183683
454 Sequencing (SRP001803)
150
78
-
His
GTG
[SRA]
>SRA1017957
SRR035082.220697
454 Sequencing (SRP001803)
430
358
-
His
GTG
[SRA]
>SRA1018280
SRR035082.268308
454 Sequencing (SRP001803)
260
188
-
His
GTG
[SRA]
>SRA1029833
SRR035087.189669
454 Sequencing (SRP001808)
197
269
+
His
GTG
[SRA]
>SRA1048844
SRR035094.261720
454 Sequencing (SRP001815)
181
253
+
His
GTG
[SRA]
>SRA1049021
SRR035094.316101
454 Sequencing (SRP001815)
182
254
+
His
GTG
[SRA]
Identical group No.804990 (6 seq.)
>WENV170603385
FUWD010307196
[FUWD] metagenome; unknown
103
176
+
His
GTG
[ENA]
¢þ
>WENV170613221
FUWD012790575
[FUWD] metagenome; unknown
464
391
-
His
GTG
[ENA]
¢þ
>SRA1047695
SRR035094.23009
454 Sequencing (SRP001815)
379
306
-
His
GTG
[SRA]
>SRA1049023
SRR035094.317672
454 Sequencing (SRP001815)
107
34
-
His
GTG
[SRA]
>SRA1050090
SRR035095.190597
454 Sequencing (SRP001816)
168
95
-
His
GTG
[SRA]
>SRA1050448
SRR035095.265620
454 Sequencing (SRP001816)
93
166
+
His
GTG
[SRA]
Identical group No.805295 (3 seq.)
>WENV170612768
FUWD012684475
[FUWD] metagenome; unknown
131
58
-
His
GTG
[ENA]
¢þ
>SRA1048957
SRR035094.296704
454 Sequencing (SRP001815)
141
68
-
His
GTG
[SRA]
>SRA1050023
SRR035095.178304
454 Sequencing (SRP001816)
18
91
+
His
GTG
[SRA]
Identical group No.824084 (2 seq.)
>SRA1047994
SRR035094.84731
454 Sequencing (SRP001815)
266
339
+
His
GTG
[SRA]
>SRA1048390
SRR035094.162432
454 Sequencing (SRP001815)
268
341
+
His
GTG
[SRA]
Identical group No.824098 (1 seq.)
>SRA1048536
SRR035094.195946
454 Sequencing (SRP001815)
170
243
+
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK