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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TAC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.240986 (20 seq.)
>W1711120837
LUHG01000039
Bacteroidota
Hydrotalea flava [LUHG]
39130
39207
+
Val
TAC
[ENA]
¡û
>W1711385738
MEEN01000028
Bacteroidota
Niastella sp. SCN 39-18 [MEEN]
81013
80938
-
Val
TAC
[ENA]
¡û
>W1711503759
MKTX01000003
Bacteroidota
Sphingobacteriales bacterium 39-19 [MKTX]
107519
107444
-
Val
TAC
[ENA]
¡û
>WENV180100580
OAOO01011558
[OAOO] marine metagenome; ENVO:00002010
104
29
-
Val
TAC
[ENA]
¢þ
>WENV180284181
OBID01019956
[OBID] metagenome; sludge
994
1069
+
Val
TAC
[ENA]
¢þ
>WENV181169705
OEIV010007801
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2339
2414
+
Val
TAC
[ENA]
¢þ
>WENV183092319
OLKZ01000109
[OLKZ] soil metagenome; soil
129273
129198
-
Val
TAC
[ENA]
¢þ
>WENV170009354
APMI01000104
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1028224
1028301
+
Val
TAC
[ENA]
¢þ
>WENV170010507
APMI01018975
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
13555
13480
-
Val
TAC
[ENA]
¢þ
>WENV170551456
CXWJ01008304
[CXWJ] wastewater metagenome; activated sludge
1334
1257
-
Val
TAC
[ENA]
¢þ
>WENV170558992
CXWL01104592
[CXWL] groundwater metagenome; biofilm material
1436
1359
-
Val
TAC
[ENA]
¢þ
>WENV170650849
JRYE01030660
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
2714
2789
+
Val
TAC
[ENA]
¢þ
>SRA1047757
SRR035094.36008
454 Sequencing (SRP001815)
236
313
+
Val
TAC
[SRA]
>ENV09000395
ABSN01063164
Freshwater sediment metagenome lwFormaldehyde_C1
276
201
-
Val
TAC
[ENA]
¡û
>C161092535
CP015971
Bacteroidota
Arachidicoccus sp. BS20 [CP015971]
3351929
3352004
+
Val
TAC
[Ensembl]
¡û
>W1610503558
FLNP01000044
Bacteroidota
Hydrotalea flava [FLNP]
4218
4295
+
Val
TAC
[ENA]
¡û
>W1610503569
FLNQ01000020
Bacteroidota
Hydrotalea flava [FLNQ]
9823
9746
-
Val
TAC
[ENA]
¡û
>W1610503600
FLNR01000076
Bacteroidota
Hydrotalea flava [FLNR]
4858
4781
-
Val
TAC
[ENA]
¡û
>W1610503631
FLNT01000060
Bacteroidota
Hydrotalea flava [FLNT]
10357
10280
-
Val
TAC
[ENA]
¡û
>W1610932034
LUHG01000039
Bacteroidota
Hydrotalea flava [LUHG]
39130
39207
+
Val
TAC
[ENA]
¡û
Identical group No.249662 (13 seq.)
>WENV180078344
MPMB02099948
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
1720
1643
-
Val
TAC
[ENA]
¢þ
>WENV183805418
PVBE011018182
[PVBE] marine metagenome; water
3998
4075
+
Val
TAC
[ENA]
¢þ
>WENV170210484
CEPV01209320
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
304
227
-
Val
TAC
[ENA]
¢þ
>WENV170396110
CEUC01182270
[CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
108
31
-
Val
TAC
[ENA]
¢þ
>WENV170399071
CEUD01336996
[CEUD] marine metagenome genome assembly TARA_137_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
203
280
+
Val
TAC
[ENA]
¢þ
>WENV170536023
CEWP01139573
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1890
1813
-
Val
TAC
[ENA]
¢þ
>WENV170571820
FLOH01000324
[FLOH] marine metagenome; water
116617
116694
+
Val
TAC
[ENA]
¢þ
>WENV170619782
FUWD013021169
[FUWD] metagenome; unknown
5275
5198
-
Val
TAC
[ENA]
¢þ
>WENV170627901
FUWD013239410
[FUWD] metagenome; unknown
5275
5198
-
Val
TAC
[ENA]
¢þ
>SRA1032887
SRR035088.121941
454 Sequencing (SRP001809)
415
338
-
Val
TAC
[SRA]
>SRA1033839
SRR035088.371768
454 Sequencing (SRP001809)
324
247
-
Val
TAC
[SRA]
>SRA1033917
SRR035088.406686
454 Sequencing (SRP001809)
92
15
-
Val
TAC
[SRA]
>SRA1048932
SRR035094.290430
454 Sequencing (SRP001815)
232
155
-
Val
TAC
[SRA]
Identical group No.263997 (1 seq.)
>SRA1048084
SRR035094.106061
454 Sequencing (SRP001815)
44
119
+
Val
TAC
[SRA]
Identical group No.272516 (13 seq.)
>WENV170620588
FUWD013034587
[FUWD] metagenome; unknown
1000
924
-
Val
TAC
[ENA]
¢þ
>WENV170626722
FUWD013229103
[FUWD] metagenome; unknown
2197
2121
-
Val
TAC
[ENA]
¢þ
>WENV170628728
FUWD013251961
[FUWD] metagenome; unknown
1000
924
-
Val
TAC
[ENA]
¢þ
>WENV170629212
FUWD013264420
[FUWD] metagenome; unknown
6159
6083
-
Val
TAC
[ENA]
¢þ
>SRA1017262
SRR035082.107261
454 Sequencing (SRP001803)
206
130
-
Val
TAC
[SRA]
>SRA1018773
SRR035082.345574
454 Sequencing (SRP001803)
128
204
+
Val
TAC
[SRA]
>SRA1030071
SRR035087.224304
454 Sequencing (SRP001808)
418
342
-
Val
TAC
[SRA]
>SRA1034243
SRR035089.33842
454 Sequencing (SRP001810)
110
34
-
Val
TAC
[SRA]
>SRA1040002
SRR035091.14592
454 Sequencing (SRP001812)
48
124
+
Val
TAC
[SRA]
>SRA1041571
SRR035091.262568
454 Sequencing (SRP001812)
45
121
+
Val
TAC
[SRA]
>SRA1043861
SRR035092.186949
454 Sequencing (SRP001813)
260
336
+
Val
TAC
[SRA]
>SRA1044122
SRR035092.227343
454 Sequencing (SRP001813)
163
239
+
Val
TAC
[SRA]
>SRA1047750
SRR035094.34837
454 Sequencing (SRP001815)
132
208
+
Val
TAC
[SRA]
Identical group No.358765 (6 seq.)
>WENV170622499
FUWD013107285
[FUWD] metagenome; unknown
1202
1276
+
Val
TAC
[ENA]
¢þ
>WENV170630723
FUWD013321613
[FUWD] metagenome; unknown
1202
1276
+
Val
TAC
[ENA]
¢þ
>SRA1041492
SRR035091.249690
454 Sequencing (SRP001812)
72
146
+
Val
TAC
[SRA]
>SRA1043560
SRR035092.138253
454 Sequencing (SRP001813)
397
471
+
Val
TAC
[SRA]
>SRA1047635
SRR035094.473
454 Sequencing (SRP001815)
41
115
+
Val
TAC
[SRA]
>SRA1047640
SRR035094.3810
454 Sequencing (SRP001815)
42
116
+
Val
TAC
[SRA]
Identical group No.415544 (2 seq.)
>SRA1048108
SRR035094.110722
454 Sequencing (SRP001815)
160
84
-
Val
TAC
[SRA]
>SRA1048213
SRR035094.129582
454 Sequencing (SRP001815)
160
84
-
Val
TAC
[SRA]
Identical group No.415556 (1 seq.)
>SRA1048304
SRR035094.144299
454 Sequencing (SRP001815)
102
29
-
Val
TAC
[SRA]
Identical group No.415569 (1 seq.)
>SRA1048575
SRR035094.202170
454 Sequencing (SRP001815)
327
251
-
Val
TAC
[SRA]
Identical group No.453378 (30 seq.)
>W131157557
AQSK01000195
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
43905
43980
+
Val
TAC
[ENA]
¡û
>W131157602
AQSM01000006
Unclassified
Cloacimonetes bacterium SCGC AAA252-N14 KSB1 bacterium SCGC AAA252-N14 [AQSM]
1587
1662
+
Val
TAC
[ENA]
¡û
>W131157675
AQSO01000151
Unclassified
Cloacimonetes bacterium SCGC AAA252-D03 KSB1 bacterium SCGC AAA252-D03 [AQSO]
21101
21176
+
Val
TAC
[ENA]
¡û
>W131192116
ASKN01000008
Unclassified
Cloacimonetes bacterium SCGC AAA252-F02 KSB1 bacterium SCGC AAA252-F02 [ASKN]
18275
18350
+
Val
TAC
[ENA]
¡û
>W131192156
ASKP01000044
Unclassified
Cloacimonetes bacterium SCGC AAA252-L05 KSB1 bacterium SCGC AAA252-L05 [ASKP]
7837
7762
-
Val
TAC
[ENA]
¡û
>W131192169
ASKQ01000018
Unclassified
Cloacimonetes bacterium SCGC AAA252-O17 KSB1 bacterium SCGC AAA252-O17 [ASKQ]
7893
7818
-
Val
TAC
[ENA]
¡û
>W131192958
ASNH01000106
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
1475
1550
+
Val
TAC
[ENA]
¡û
>W131192998
ASNI01000079
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
1590
1665
+
Val
TAC
[ENA]
¡û
>W131193019
ASNK01000003
Unclassified
Cloacimonetes bacterium SCGC AAA252-E20 KSB1 bacterium SCGC AAA252-E20 [ASNK]
32366
32441
+
Val
TAC
[ENA]
¡û
>W131193091
ASNN01000068
Unclassified
Cloacimonetes bacterium SCGC AAA252-I11 KSB1 bacterium SCGC AAA252-I11 [ASNN]
1566
1641
+
Val
TAC
[ENA]
¡û
>W131193110
ASNO01000013
Unclassified
Cloacimonetes bacterium SCGC AAA252-I16 KSB1 bacterium SCGC AAA252-I16 [ASNO]
44498
44573
+
Val
TAC
[ENA]
¡û
>W131193165
ASNS01000004
Unclassified
Cloacimonetes bacterium SCGC AAA252-P02 KSB1 bacterium SCGC AAA252-P02 [ASNS]
23944
23869
-
Val
TAC
[ENA]
¡û
>W131193188
ASNT01000022
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
34212
34287
+
Val
TAC
[ENA]
¡û
>W141139677
AWNX01000009
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
7914
7839
-
Val
TAC
[ENA]
¡û
>W141139722
AWNY01000029
Unclassified
Cloacimonetes bacterium JGI OTU-2 [AWNY]
21101
21176
+
Val
TAC
[ENA]
¡û
>WENV170624916
FUWD013188751
[FUWD] metagenome; unknown
1566
1491
-
Val
TAC
[ENA]
¢þ
>WENV170633175
FUWD013392462
[FUWD] metagenome; unknown
1566
1491
-
Val
TAC
[ENA]
¢þ
>SRA1026317
SRR035085.184943
454 Sequencing (SRP001806)
33
108
+
Val
TAC
[SRA]
>SRA1026457
SRR035085.210410
454 Sequencing (SRP001806)
164
89
-
Val
TAC
[SRA]
>SRA1026719
SRR035085.270427
454 Sequencing (SRP001806)
123
198
+
Val
TAC
[SRA]
>SRA1029050
SRR035087.65337
454 Sequencing (SRP001808)
129
54
-
Val
TAC
[SRA]
>SRA1029259
SRR035087.98902
454 Sequencing (SRP001808)
128
53
-
Val
TAC
[SRA]
>SRA1029402
SRR035087.121944
454 Sequencing (SRP001808)
130
55
-
Val
TAC
[SRA]
>SRA1031455
SRR035087.432889
454 Sequencing (SRP001808)
54
129
+
Val
TAC
[SRA]
>SRA1033443
SRR035088.258758
454 Sequencing (SRP001809)
296
371
+
Val
TAC
[SRA]
>SRA1034277
SRR035089.47020
454 Sequencing (SRP001810)
79
4
-
Val
TAC
[SRA]
>SRA1034848
SRR035089.185508
454 Sequencing (SRP001810)
428
353
-
Val
TAC
[SRA]
>SRA1036103
SRR035089.446336
454 Sequencing (SRP001810)
93
18
-
Val
TAC
[SRA]
>SRA1036293
SRR035089.489104
454 Sequencing (SRP001810)
94
19
-
Val
TAC
[SRA]
>SRA1048394
SRR035094.163878
454 Sequencing (SRP001815)
133
58
-
Val
TAC
[SRA]
Identical group No.453435 (4 seq.)
>WENV170598501
FUWD010037560
[FUWD] metagenome; unknown
321
246
-
Val
TAC
[ENA]
¢þ
>SRA1026711
SRR035085.267784
454 Sequencing (SRP001806)
338
263
-
Val
TAC
[SRA]
>SRA1034581
SRR035089.128932
454 Sequencing (SRP001810)
201
126
-
Val
TAC
[SRA]
>SRA1047858
SRR035094.56524
454 Sequencing (SRP001815)
90
165
+
Val
TAC
[SRA]
Identical group No.453574 (6 seq.)
>WENV170615641
FUWD012863458
[FUWD] metagenome; unknown
628
553
-
Val
TAC
[ENA]
¢þ
>WENV170615645
FUWD012863459
[FUWD] metagenome; unknown
185
110
-
Val
TAC
[ENA]
¢þ
>SRA1034711
SRR035089.157784
454 Sequencing (SRP001810)
178
253
+
Val
TAC
[SRA]
>SRA1035419
SRR035089.301449
454 Sequencing (SRP001810)
396
321
-
Val
TAC
[SRA]
>SRA1035900
SRR035089.399348
454 Sequencing (SRP001810)
88
163
+
Val
TAC
[SRA]
>SRA1048652
SRR035094.216719
454 Sequencing (SRP001815)
400
325
-
Val
TAC
[SRA]
Identical group No.453804 (8 seq.)
>WENV170608064
FUWD010888519
[FUWD] metagenome; unknown
88
161
+
Val
TAC
[ENA]
¢þ
>SRA1029255
SRR035087.98626
454 Sequencing (SRP001808)
294
366
+
Val
TAC
[SRA]
>SRA1032457
SRR035088.16341
454 Sequencing (SRP001809)
221
146
-
Val
TAC
[SRA]
>SRA1032745
SRR035088.93182
454 Sequencing (SRP001809)
390
317
-
Val
TAC
[SRA]
>SRA1032981
SRR035088.143263
454 Sequencing (SRP001809)
68
143
+
Val
TAC
[SRA]
>SRA1036130
SRR035089.450854
454 Sequencing (SRP001810)
88
161
+
Val
TAC
[SRA]
>SRA1042946
SRR035091.471766
454 Sequencing (SRP001812)
401
326
-
Val
TAC
[SRA]
>SRA1048235
SRR035094.131924
454 Sequencing (SRP001815)
126
54
-
Val
TAC
[SRA]
Identical group No.612529 (1 seq.)
>SRA1047938
SRR035094.71094
454 Sequencing (SRP001815)
219
144
-
Val
TAC
[SRA]
Identical group No.612549 (1 seq.)
>SRA1048184
SRR035094.123924
454 Sequencing (SRP001815)
143
68
-
Val
TAC
[SRA]
Identical group No.612575 (1 seq.)
>SRA1048664
SRR035094.219985
454 Sequencing (SRP001815)
138
63
-
Val
TAC
[SRA]
Identical group No.612596 (1 seq.)
>SRA1048905
SRR035094.281332
454 Sequencing (SRP001815)
88
13
-
Val
TAC
[SRA]
Identical group No.654520 (3 seq.)
>SRA1035294
SRR035089.277527
454 Sequencing (SRP001810)
92
163
+
Val
TAC
[SRA]
>SRA1037568
SRR035090.156541
454 Sequencing (SRP001811)
368
297
-
Val
TAC
[SRA]
>SRA1048561
SRR035094.198590
454 Sequencing (SRP001815)
171
242
+
Val
TAC
[SRA]
Identical group No.710829 (3 seq.)
>WENV170608219
FUWD010903465
[FUWD] metagenome; unknown
279
205
-
Val
TAC
[ENA]
¢þ
>SRA1048798
SRR035094.250855
454 Sequencing (SRP001815)
291
217
-
Val
TAC
[SRA]
>SRA1048900
SRR035094.280192
454 Sequencing (SRP001815)
286
212
-
Val
TAC
[SRA]
Identical group No.788231 (12 seq.)
>WENV170617942
FUWD012944772
[FUWD] metagenome; unknown
531
461
-
Val
TAC
[ENA]
¢þ
>WENV170625608
FUWD013201698
[FUWD] metagenome; unknown
271
201
-
Val
TAC
[ENA]
¢þ
>SRA1017925
SRR035082.215257
454 Sequencing (SRP001803)
93
23
-
Val
TAC
[SRA]
>SRA1032256
SRR035087.588772
454 Sequencing (SRP001808)
274
204
-
Val
TAC
[SRA]
>SRA1043099
SRR035092.46693
454 Sequencing (SRP001813)
238
168
-
Val
TAC
[SRA]
>SRA1043448
SRR035092.116719
454 Sequencing (SRP001813)
219
289
+
Val
TAC
[SRA]
>SRA1043667
SRR035092.156930
454 Sequencing (SRP001813)
137
67
-
Val
TAC
[SRA]
>SRA1043925
SRR035092.195280
454 Sequencing (SRP001813)
373
443
+
Val
TAC
[SRA]
>SRA1047941
SRR035094.72011
454 Sequencing (SRP001815)
154
224
+
Val
TAC
[SRA]
>SRA1048812
SRR035094.254991
454 Sequencing (SRP001815)
62
132
+
Val
TAC
[SRA]
>SRA1048987
SRR035094.304239
454 Sequencing (SRP001815)
140
210
+
Val
TAC
[SRA]
>SRA1049024
SRR035094.317896
454 Sequencing (SRP001815)
140
210
+
Val
TAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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