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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TAG
HIT:
30 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90548 (3 seq.)
>WENV170611994
FUWD012478378
[FUWD] metagenome; unknown
141
54
-
Leu
TAG
[ENA]
¢þ
>SRA1029710
SRR035087.168748
454 Sequencing (SRP001808)
376
289
-
Leu
TAG
[SRA]
>SRA1047962
SRR035094.76554
454 Sequencing (SRP001815)
222
135
-
Leu
TAG
[SRA]
Identical group No.107020 (1 seq.)
>SRA1048904
SRR035094.281332
454 Sequencing (SRP001815)
464
379
-
Leu
TAG
[SRA]
Identical group No.112540 (22 seq.)
>WENV170598627
FUWD010042447
[FUWD] metagenome; unknown
604
690
+
Leu
TAG
[ENA]
¢þ
>WENV170598636
FUWD010042696
[FUWD] metagenome; unknown
409
323
-
Leu
TAG
[ENA]
¢þ
>WENV170616313
FUWD012883945
[FUWD] metagenome; unknown
594
508
-
Leu
TAG
[ENA]
¢þ
>WENV170626763
FUWD013229345
[FUWD] metagenome; unknown
204
118
-
Leu
TAG
[ENA]
¢þ
>SRA1017308
SRR035082.116111
454 Sequencing (SRP001803)
138
52
-
Leu
TAG
[SRA]
>SRA1018229
SRR035082.258708
454 Sequencing (SRP001803)
329
417
+
Leu
TAG
[SRA]
>SRA1019537
SRR035082.473154
454 Sequencing (SRP001803)
192
106
-
Leu
TAG
[SRA]
>SRA1026274
SRR035085.177458
454 Sequencing (SRP001806)
151
65
-
Leu
TAG
[SRA]
>SRA1026304
SRR035085.182311
454 Sequencing (SRP001806)
153
67
-
Leu
TAG
[SRA]
>SRA1026341
SRR035085.189235
454 Sequencing (SRP001806)
153
67
-
Leu
TAG
[SRA]
>SRA1033395
SRR035088.244520
454 Sequencing (SRP001809)
151
65
-
Leu
TAG
[SRA]
>SRA1034206
SRR035089.23405
454 Sequencing (SRP001810)
415
329
-
Leu
TAG
[SRA]
>SRA1035340
SRR035089.286268
454 Sequencing (SRP001810)
47
133
+
Leu
TAG
[SRA]
>SRA1040824
SRR035091.154482
454 Sequencing (SRP001812)
277
191
-
Leu
TAG
[SRA]
>SRA1042207
SRR035091.356183
454 Sequencing (SRP001812)
73
159
+
Leu
TAG
[SRA]
>SRA1047925
SRR035094.69375
454 Sequencing (SRP001815)
348
262
-
Leu
TAG
[SRA]
>SRA1048986
SRR035094.303934
454 Sequencing (SRP001815)
38
124
+
Leu
TAG
[SRA]
>SRA1049193
SRR035095.35596
454 Sequencing (SRP001816)
371
285
-
Leu
TAG
[SRA]
>SRA1049567
SRR035095.96893
454 Sequencing (SRP001816)
189
103
-
Leu
TAG
[SRA]
>SRA1049674
SRR035095.116429
454 Sequencing (SRP001816)
444
358
-
Leu
TAG
[SRA]
>SRA1049719
SRR035095.125173
454 Sequencing (SRP001816)
267
353
+
Leu
TAG
[SRA]
>SRA1050661
SRR035095.316937
454 Sequencing (SRP001816)
214
128
-
Leu
TAG
[SRA]
Identical group No.112577 (7 seq.)
>WENV170626917
FUWD013230055
[FUWD] metagenome; unknown
13618
13534
-
Leu
TAG
[ENA]
¢þ
>SRA1032539
SRR035088.41411
454 Sequencing (SRP001809)
209
125
-
Leu
TAG
[SRA]
>SRA1034697
SRR035089.155391
454 Sequencing (SRP001810)
104
20
-
Leu
TAG
[SRA]
>SRA1034997
SRR035089.214276
454 Sequencing (SRP001810)
104
20
-
Leu
TAG
[SRA]
>SRA1035027
SRR035089.221431
454 Sequencing (SRP001810)
104
20
-
Leu
TAG
[SRA]
>SRA1042108
SRR035091.339703
454 Sequencing (SRP001812)
208
124
-
Leu
TAG
[SRA]
>SRA1048165
SRR035094.120972
454 Sequencing (SRP001815)
240
324
+
Leu
TAG
[SRA]
Identical group No.118294 (8 seq.)
>WENV170620079
FUWD013025456
[FUWD] metagenome; unknown
6600
6686
+
Leu
TAG
[ENA]
¢þ
>WENV170623296
FUWD013144954
[FUWD] metagenome; unknown
377
463
+
Leu
TAG
[ENA]
¢þ
>WENV170628204
FUWD013243358
[FUWD] metagenome; unknown
6600
6686
+
Leu
TAG
[ENA]
¢þ
>WENV170631557
FUWD013356943
[FUWD] metagenome; unknown
377
463
+
Leu
TAG
[ENA]
¢þ
>SRA1029215
SRR035087.93266
454 Sequencing (SRP001808)
184
98
-
Leu
TAG
[SRA]
>SRA1033426
SRR035088.253914
454 Sequencing (SRP001809)
174
260
+
Leu
TAG
[SRA]
>SRA1033693
SRR035088.326803
454 Sequencing (SRP001809)
166
80
-
Leu
TAG
[SRA]
>SRA1048916
SRR035094.285458
454 Sequencing (SRP001815)
389
303
-
Leu
TAG
[SRA]
Identical group No.118378 (6 seq.)
>WENV170608032
FUWD010884889
[FUWD] metagenome; unknown
1
87
+
Leu
TAG
[ENA]
¢þ
>WENV170699774
LGVF01656528
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
608
524
-
Leu
TAG
[ENA]
¢þ
>SRA1031920
SRR035087.512886
454 Sequencing (SRP001808)
251
167
-
Leu
TAG
[SRA]
>SRA1040942
SRR035091.171303
454 Sequencing (SRP001812)
443
357
-
Leu
TAG
[SRA]
>SRA1041085
SRR035091.194519
454 Sequencing (SRP001812)
120
206
+
Leu
TAG
[SRA]
>SRA1048868
SRR035094.267432
454 Sequencing (SRP001815)
295
381
+
Leu
TAG
[SRA]
Identical group No.131831 (6 seq.)
>WENV170624850
FUWD013187968
[FUWD] metagenome; unknown
1742
1828
+
Leu
TAG
[ENA]
¢þ
>WENV170633118
FUWD013391785
[FUWD] metagenome; unknown
1742
1828
+
Leu
TAG
[ENA]
¢þ
>SRA1048445
SRR035094.174652
454 Sequencing (SRP001815)
125
211
+
Leu
TAG
[SRA]
>SRA1049026
SRR035094.318296
454 Sequencing (SRP001815)
29
115
+
Leu
TAG
[SRA]
>SRA1049226
SRR035095.40571
454 Sequencing (SRP001816)
401
315
-
Leu
TAG
[SRA]
>SRA1049515
SRR035095.88765
454 Sequencing (SRP001816)
401
315
-
Leu
TAG
[SRA]
Identical group No.131847 (13 seq.)
>WENV170627201
FUWD013231996
[FUWD] metagenome; unknown
1789
1704
-
Leu
TAG
[ENA]
¢þ
>WENV170632588
FUWD013384757
[FUWD] metagenome; unknown
1789
1704
-
Leu
TAG
[ENA]
¢þ
>SRA1021330
SRR035083.243374
454 Sequencing (SRP001804)
232
317
+
Leu
TAG
[SRA]
>SRA1032525
SRR035088.38294
454 Sequencing (SRP001809)
29
114
+
Leu
TAG
[SRA]
>SRA1042745
SRR035091.439336
454 Sequencing (SRP001812)
106
191
+
Leu
TAG
[SRA]
>SRA1042801
SRR035091.449133
454 Sequencing (SRP001812)
49
134
+
Leu
TAG
[SRA]
>SRA1042911
SRR035091.466299
454 Sequencing (SRP001812)
69
154
+
Leu
TAG
[SRA]
>SRA1043905
SRR035092.192247
454 Sequencing (SRP001813)
40
125
+
Leu
TAG
[SRA]
>SRA1044807
SRR035092.348371
454 Sequencing (SRP001813)
327
242
-
Leu
TAG
[SRA]
>SRA1047830
SRR035094.49965
454 Sequencing (SRP001815)
169
254
+
Leu
TAG
[SRA]
>SRA1049553
SRR035095.95045
454 Sequencing (SRP001816)
489
404
-
Leu
TAG
[SRA]
>SRA1049617
SRR035095.105209
454 Sequencing (SRP001816)
135
50
-
Leu
TAG
[SRA]
>SRA1050424
SRR035095.259770
454 Sequencing (SRP001816)
313
228
-
Leu
TAG
[SRA]
Identical group No.145026 (1 seq.)
>SRA1047995
SRR035094.84760
454 Sequencing (SRP001815)
130
47
-
Leu
TAG
[SRA]
Identical group No.145033 (1 seq.)
>SRA1048370
SRR035094.158936
454 Sequencing (SRP001815)
267
181
-
Leu
TAG
[SRA]
Identical group No.153852 (2 seq.)
>SRA1025960
SRR035085.117372
454 Sequencing (SRP001806)
396
311
-
Leu
TAG
[SRA]
>SRA1048474
SRR035094.181841
454 Sequencing (SRP001815)
131
46
-
Leu
TAG
[SRA]
Identical group No.174303 (1 seq.)
>SRA1048309
SRR035094.145142
454 Sequencing (SRP001815)
83
168
+
Leu
TAG
[SRA]
Identical group No.174306 (1 seq.)
>SRA1048369
SRR035094.158852
454 Sequencing (SRP001815)
164
79
-
Leu
TAG
[SRA]
Identical group No.174309 (1 seq.)
>SRA1048588
SRR035094.204081
454 Sequencing (SRP001815)
169
254
+
Leu
TAG
[SRA]
Identical group No.180189 (3 seq.)
>WENV170612028
FUWD012485430
[FUWD] metagenome; unknown
88
172
+
Leu
TAG
[ENA]
¢þ
>SRA1025544
SRR035085.36311
454 Sequencing (SRP001806)
299
382
+
Leu
TAG
[SRA]
>SRA1047823
SRR035094.48562
454 Sequencing (SRP001815)
165
249
+
Leu
TAG
[SRA]
Identical group No.185347 (2 seq.)
>WENV170645307
JMSV01000044
[JMSV] bioreactor metagenome; Culture-2 Bioreactor Bmz derived from microbial biomass from the upper 2 cm of a marine
6995
6911
-
Leu
TAG
[ENA]
¢þ
>SRA1048028
SRR035094.94349
454 Sequencing (SRP001815)
219
303
+
Leu
TAG
[SRA]
Identical group No.186101 (5 seq.)
>WENV170603268
FUWD010297727
[FUWD] metagenome; unknown
803
719
-
Leu
TAG
[ENA]
¢þ
>SRA1017427
SRR035082.137609
454 Sequencing (SRP001803)
275
359
+
Leu
TAG
[SRA]
>SRA1018182
SRR035082.252336
454 Sequencing (SRP001803)
335
251
-
Leu
TAG
[SRA]
>SRA1031002
SRR035087.358736
454 Sequencing (SRP001808)
295
379
+
Leu
TAG
[SRA]
>SRA1048688
SRR035094.228158
454 Sequencing (SRP001815)
399
315
-
Leu
TAG
[SRA]
Identical group No.198067 (3 seq.)
>WENV170605133
FUWD010453213
[FUWD] metagenome; unknown
209
293
+
Leu
TAG
[ENA]
¢þ
>SRA1048679
SRR035094.225298
454 Sequencing (SRP001815)
168
252
+
Leu
TAG
[SRA]
>SRA1049083
SRR035095.16855
454 Sequencing (SRP001816)
98
14
-
Leu
TAG
[SRA]
Identical group No.198196 (9 seq.)
>WENV180582842
OCMR01096764
[OCMR] metagenome; diffuse fluid
6
90
+
Leu
TAG
[ENA]
¢þ
>WENV183704379
PDWI01000197
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
14199
14281
+
Leu
TAG
[ENA]
¢þ
>WENV183714520
PDWI01188619
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
279
361
+
Leu
TAG
[ENA]
¢þ
>WENV183718936
PDWJ01007915
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7944
7862
-
Leu
TAG
[ENA]
¢þ
>WENV183720265
PDWJ01030528
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2412
2330
-
Leu
TAG
[ENA]
¢þ
>WENV183721806
PDWJ01088332
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1363
1445
+
Leu
TAG
[ENA]
¢þ
>WENV170612753
FUWD012680053
[FUWD] metagenome; unknown
351
269
-
Leu
TAG
[ENA]
¢þ
>SRA1048261
SRR035094.136495
454 Sequencing (SRP001815)
280
362
+
Leu
TAG
[SRA]
>WENV078033
AAFY01010623
Fossil microbial community from Whale Fall (Santa Cruz Basin)
377
461
+
Leu
TAG
[ENA]
Identical group No.198256 (3 seq.)
>WENV170620579
FUWD013034495
[FUWD] metagenome; unknown
2922
2841
-
Leu
TAG
[ENA]
¢þ
>WENV170628720
FUWD013251881
[FUWD] metagenome; unknown
2922
2841
-
Leu
TAG
[ENA]
¢þ
>SRA1047786
SRR035094.41487
454 Sequencing (SRP001815)
153
234
+
Leu
TAG
[SRA]
Identical group No.198268 (5 seq.)
>WENV170621632
FUWD013066713
[FUWD] metagenome; unknown
3080
3164
+
Leu
TAG
[ENA]
¢þ
>WENV170629821
FUWD013282672
[FUWD] metagenome; unknown
3080
3164
+
Leu
TAG
[ENA]
¢þ
>SRA1043563
SRR035092.138505
454 Sequencing (SRP001813)
355
271
-
Leu
TAG
[SRA]
>SRA1043809
SRR035092.179091
454 Sequencing (SRP001813)
378
462
+
Leu
TAG
[SRA]
>SRA1048383
SRR035094.161915
454 Sequencing (SRP001815)
324
240
-
Leu
TAG
[SRA]
Identical group No.198290 (4 seq.)
>WENV170623120
FUWD013137084
[FUWD] metagenome; unknown
580
662
+
Leu
TAG
[ENA]
¢þ
>WENV170631359
FUWD013349898
[FUWD] metagenome; unknown
580
662
+
Leu
TAG
[ENA]
¢þ
>SRA1048591
SRR035094.204753
454 Sequencing (SRP001815)
179
261
+
Leu
TAG
[SRA]
>SRA1050086
SRR035095.189467
454 Sequencing (SRP001816)
13
95
+
Leu
TAG
[SRA]
Identical group No.198293 (4 seq.)
>WENV170623342
FUWD013146550
[FUWD] metagenome; unknown
956
1038
+
Leu
TAG
[ENA]
¢þ
>WENV170631570
FUWD013357418
[FUWD] metagenome; unknown
5529
5447
-
Leu
TAG
[ENA]
¢þ
>SRA1048401
SRR035094.165731
454 Sequencing (SRP001815)
145
227
+
Leu
TAG
[SRA]
>SRA1049680
SRR035095.118005
454 Sequencing (SRP001816)
327
245
-
Leu
TAG
[SRA]
Identical group No.210168 (1 seq.)
>SRA1047969
SRR035094.77848
454 Sequencing (SRP001815)
256
337
+
Leu
TAG
[SRA]
Identical group No.210170 (1 seq.)
>SRA1048050
SRR035094.98805
454 Sequencing (SRP001815)
331
413
+
Leu
TAG
[SRA]
Identical group No.210174 (1 seq.)
>SRA1048540
SRR035094.196555
454 Sequencing (SRP001815)
177
261
+
Leu
TAG
[SRA]
Identical group No.210177 (1 seq.)
>SRA1048612
SRR035094.209595
454 Sequencing (SRP001815)
361
280
-
Leu
TAG
[SRA]
Identical group No.210178 (2 seq.)
>SRA1048629
SRR035094.211957
454 Sequencing (SRP001815)
178
94
-
Leu
TAG
[SRA]
>W1710606609
FWXY01000002
Thermodesulfobacteriota
Desulfocicer vacuolatum DSM 3385 [FWXY]
238846
238762
-
Leu
TAG
[ENA]
¡û
Identical group No.226328 (1 seq.)
>SRA1047655
SRR035094.12642
454 Sequencing (SRP001815)
207
124
-
Leu
TAG
[SRA]
Identical group No.415521 (1 seq.)
>SRA1047779
SRR035094.40112
454 Sequencing (SRP001815)
224
148
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK