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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TAT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244422 (9 seq.)
>WENV170626922
FUWD013230100
[FUWD] metagenome; unknown
9971
9894
-
Ile
TAT
[ENA]
¢þ
>WENV170630701
FUWD013321255
[FUWD] metagenome; unknown
8263
8340
+
Ile
TAT
[ENA]
¢þ
>SRA1028797
SRR035087.9030
454 Sequencing (SRP001808)
95
18
-
Ile
TAT
[SRA]
>SRA1040154
SRR035091.49270
454 Sequencing (SRP001812)
449
524
+
Ile
TAT
[SRA]
>SRA1043532
SRR035092.134015
454 Sequencing (SRP001813)
180
103
-
Ile
TAT
[SRA]
>SRA1044327
SRR035092.260768
454 Sequencing (SRP001813)
356
279
-
Ile
TAT
[SRA]
>SRA1048085
SRR035094.106120
454 Sequencing (SRP001815)
95
172
+
Ile
TAT
[SRA]
>SRA1048333
SRR035094.149434
454 Sequencing (SRP001815)
185
108
-
Ile
TAT
[SRA]
>SRA1048490
SRR035094.185453
454 Sequencing (SRP001815)
130
55
-
Ile
TAT
[SRA]
Identical group No.300831 (6 seq.)
>WENV170627411
FUWD013232747
[FUWD] metagenome; unknown
32880
32955
+
Ile
TAT
[ENA]
¢þ
>WENV170627412
FUWD013232747
[FUWD] metagenome; unknown
33045
33118
+
Ile
TAT
[ENA]
¢þ
>SRA1019114
SRR035082.404344
454 Sequencing (SRP001803)
333
260
-
Ile
TAT
[SRA]
>SRA1045205
SRR035093.28379
454 Sequencing (SRP001814)
122
49
-
Ile
TAT
[SRA]
>SRA1047577
SRR035093.586436
454 Sequencing (SRP001814)
136
63
-
Ile
TAT
[SRA]
>SRA1049018
SRR035094.315409
454 Sequencing (SRP001815)
104
177
+
Ile
TAT
[SRA]
Identical group No.357715 (8 seq.)
>WENV170603435
FUWD010309025
[FUWD] metagenome; unknown
318
394
+
Ile
TAT
[ENA]
¢þ
>WENV170623231
FUWD013142461
[FUWD] metagenome; unknown
827
903
+
Ile
TAT
[ENA]
¢þ
>WENV170631487
FUWD013354677
[FUWD] metagenome; unknown
827
903
+
Ile
TAT
[ENA]
¢þ
>SRA1017061
SRR035082.73932
454 Sequencing (SRP001803)
191
115
-
Ile
TAT
[SRA]
>SRA1019464
SRR035082.461338
454 Sequencing (SRP001803)
255
179
-
Ile
TAT
[SRA]
>SRA1042580
SRR035091.411238
454 Sequencing (SRP001812)
163
87
-
Ile
TAT
[SRA]
>SRA1047876
SRR035094.59806
454 Sequencing (SRP001815)
336
260
-
Ile
TAT
[SRA]
>SRA1048946
SRR035094.294201
454 Sequencing (SRP001815)
362
286
-
Ile
TAT
[SRA]
Identical group No.358845 (4 seq.)
>WENV170623597
FUWD013159760
[FUWD] metagenome; unknown
753
829
+
Ile
TAT
[ENA]
¢þ
>WENV170631874
FUWD013369256
[FUWD] metagenome; unknown
753
829
+
Ile
TAT
[ENA]
¢þ
>SRA1040122
SRR035091.42537
454 Sequencing (SRP001812)
119
195
+
Ile
TAT
[SRA]
>SRA1048602
SRR035094.207542
454 Sequencing (SRP001815)
40
116
+
Ile
TAT
[SRA]
Identical group No.415550 (1 seq.)
>SRA1048208
SRR035094.128941
454 Sequencing (SRP001815)
299
223
-
Ile
TAT
[SRA]
Identical group No.547799 (2 seq.)
>WENV170605058
FUWD010445103
[FUWD] metagenome; unknown
154
229
+
Ile
TAT
[ENA]
¢þ
>SRA1048614
SRR035094.210271
454 Sequencing (SRP001815)
164
241
+
Ile
TAT
[SRA]
Identical group No.612520 (1 seq.)
>SRA1047797
SRR035094.43172
454 Sequencing (SRP001815)
129
201
+
Ile
TAT
[SRA]
Identical group No.612552 (1 seq.)
>SRA1048274
SRR035094.138123
454 Sequencing (SRP001815)
21
95
+
Ile
TAT
[SRA]
Identical group No.612573 (2 seq.)
>SRA1048642
SRR035094.215335
454 Sequencing (SRP001815)
37
110
+
Ile
TAT
[SRA]
>SRA1048649
SRR035094.216300
454 Sequencing (SRP001815)
37
110
+
Ile
TAT
[SRA]
Identical group No.654654 (7 seq.)
>WENV170621494
FUWD013061124
[FUWD] metagenome; unknown
1221
1292
+
Ile
TAT
[ENA]
¢þ
>WENV170629677
FUWD013277329
[FUWD] metagenome; unknown
1497
1426
-
Ile
TAT
[ENA]
¢þ
>SRA1027885
SRR035086.212222
454 Sequencing (SRP001807)
159
88
-
Ile
TAT
[SRA]
>SRA1036727
SRR035089.596089
454 Sequencing (SRP001810)
60
131
+
Ile
TAT
[SRA]
>SRA1040891
SRR035091.164604
454 Sequencing (SRP001812)
123
194
+
Ile
TAT
[SRA]
>SRA1048587
SRR035094.204025
454 Sequencing (SRP001815)
256
185
-
Ile
TAT
[SRA]
>SRA1053282
SRR035098.374223
454 Sequencing (SRP001819)
496
425
-
Ile
TAT
[SRA]
Identical group No.751696 (1 seq.)
>SRA1047965
SRR035094.77552
454 Sequencing (SRP001815)
195
121
-
Ile
TAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK