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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.134 (1 seq.)
>SRA1047748
SRR035094.34270
454 Sequencing (SRP001815)
295
196
-
SeC
TCA
[SRA]
Identical group No.597 (7 seq.)
>WENV170616113
FUWD012877926
[FUWD] metagenome; unknown
88
185
+
SeC(p)
TCA
[ENA]
¢þ
>SRA1036283
SRR035089.487651
454 Sequencing (SRP001810)
84
181
+
SeC
TCA
[SRA]
>SRA1048139
SRR035094.114980
454 Sequencing (SRP001815)
97
194
+
SeC
TCA
[SRA]
>SRA1049344
SRR035095.60930
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1049614
SRR035095.104829
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1049765
SRR035095.136111
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
>SRA1050017
SRR035095.177400
454 Sequencing (SRP001816)
280
183
-
SeC
TCA
[SRA]
Identical group No.1463 (1 seq.)
>SRA1048361
SRR035094.157033
454 Sequencing (SRP001815)
39
136
+
SeC
TCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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